rna7471, rna7471 (mRNA) Nannochloropsis gaditana

Overview
Namerna7471
Unique Namerna7471
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length321
Alignment locationCM002472.1:33236..33756 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103244g1.7674.mrna
Orig protein idgnl|cribi|Naga_103244g1.7674
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:33236..33756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103244g1gene7231Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7471rna7471-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23220.1cds7453Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7471 ID=rna7471|Name=rna7471|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
CAGGTTCAGCACCAGGGTATCGAGGCCCTCATGAACAACGATATGCAAGC
AGCCGTTAAAATTTTCCGTTTCGTCGCCCGTTTGAATTCAGATTTTGAAC
TGCTCTTGCACATTATGAAATCCTGGGCGGAGGAGATTGAGAAGGAGCTG
GACTTCCGCGTGGAGGCCTCAAATTTGGAGCGAGTGAGGGAGAATGTGGT
GGTCCGAGGTGGTTTAGATGTGGTCGTGCCGCAGCCGGTGGAAGGTAGGG
AGGGAGGAAGGGAGGGAGGGAGGGAAGGACAGCAAGTTGGAGGATCGCTT
GCTCGTCCTCAAGAGTGCTAG
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protein sequence of rna7471

>rna7471-protein ID=rna7471-protein|Name=rna7471|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MGGDKGRFGKRIGGCVCTHAIFSDFPPPALSSETLMSTLVVPTFFLPSLS
PSLPSSFSPSVAQGLRSARPLPAGSKSTRNSWLPLRGGRGGEGGGRAGGR
GGRKPSSSQKRHPKASLSRGMPGRTTLTGMTARSATGYPPP
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mRNA from alignment at CM002472.1:33236..33756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7471 ID=rna7471|Name=rna7471|organism=Nannochloropsis gaditana|type=mRNA|length=521bp|location=Sequence derived from alignment at CM002472.1:33236..33756- (Nannochloropsis gaditana)
GGGTGCGGGTGAATGGGTGGAGACAAGGGTAGATTTGGAAAGCGAATAGG
GGGATGCGTGTGTACGCATGCGATTTTCTCGGACTTCCCTCCACCCGCCC
TATCTTCGGAAACTCTTATGTCCACCCTCGTAGTCCCAACTTTTTTCCTT
CCCTCCCTCTCTCCTTCCCTCCCTTCCTCCTTCTCTCCCTCTGTTGCTCA
GGGCCTTCGCTCCGCGCGGCCACTGCCCGCTGGTTCGAAGAGCACCCGAA
ACTCATGGCTACCATTAAGAGGAGGGAGGGGGGGAGAAGGGGGAGGGAGG
GCGGGAGGAAGGGGAGGAAGGAAGCCCTCCTCCTCTCAGAAGGTAGGTGG
AAGACTGTTGAAAATCCGTCGGTACTGGCTGCTCACCTCTTCCTCCTCCC
CGCCCTCCCACGCTTCCTCTCTTGACAGCGACATCCAAAGGCCTCTTTAT
CAAGAGGGATGCCTGGGCGGACGACCTTGACCGGGATGACTGCACGCTCT
GCAACAGGGTACCCTCCTCCT
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Coding sequence (CDS) from alignment at CM002472.1:33236..33756-

>rna7471 ID=rna7471|Name=rna7471|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at CM002472.1:33236..33756- (Nannochloropsis gaditana)
CGACATCCAAAGGCCTCTTTATCAAGAGGGATGCCTGGGCGGACGACCTT
GACCGGGATGACTGCACGCTCTGCAACAGGGTACCCTCCTCCTATGGGTG
GAGACAAGGGTAGATTTGGAAAGCGAATAGGGGGATGCGTGTGTACGCAT
GCGATTTTCTCGGACTTCCCTCCACCCGCCCTATCTTCGGAAACTCTTAT
GTCCACCCTCGTAGTCCCAACTTTTTTCCTTCCCTCCCTCTCTCCTTCCC
TCCCTTCCTCCTTCTCTCCCTCTGTTGCTCAGGGCCTTCGCTCCGCGCGG
CCACTGCCCGCTGGTTCGAAGAGCACCCGAAACTCATGGCTACCATTAAG
AGGAGGGAGGGGGGGAGAAGGGGGAGGGAGGGCGGGAGGAAGGGGAGGAA
GGAAGCCCTCCTCCTCTCAGAAGCGACATCCAAAGGCCTCTTTATCAAGA
GGGATGCCTGGGCGGACGACCTTGACCGGGATGACTGCACGCTCTGCAAC
AGGGTACCCTCCTCCTATGGGTGGAGACAAGGGTAGATTTGGAAAGCGAA
TAGGGGGATGCGTGTGTACGCATGCGATTTTCTCGGACTTCCCTCCACCC
GCCCTATCTTCGGAAACTCTTATGTCCACCCTCGTAGTCCCAACTTTTTT
CCTTCCCTCCCTCTCTCCTTCCCTCCCTTCCTCCTTCTCTCCCTCTGTTG
CTCAGGGCCTTCGCTCCGCGCGGCCACTGCCCGCTGGTTCGAAGAGCACC
CGAAACTCATGGCTACCATTAAGAGGAGGGAGGGGGGGAGAAGGGGGAGG
GAGGGCGGGAGGAAGGGGAGGAAGGAAGCCCTCCTCCTCTCAGAAG
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Synonyms
Publications