EWM23220.1, cds7453 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23220.1
Unique Name	cds7453
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002472.1:33415..33744 -
Alignment location	CM002472.1:33236..33328 -

Link to JBrowse

Properties


Property Name	Value
Start range	33236
Start range	.
Protein id	EWM23220.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_103244g1.7674.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:33415..33744 -
CM002472.1	supercontig	CM002472.1:33236..33328 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM23220.1 vs. NCBI_GenBank
Match: gi|585104150|gb|EWM23220.1| (hypothetical protein Naga_103244g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 271.166 bits (692), Expect = 7.387e-92
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query:    1 MGGDKGRFGKRIGGCVCTHAIFSDFPPPALSSETLMSTLVVPTFFLPSLSPSLPSSFSPSVAQGLRSARPLPAGSKSTRNSWLPLRGGRGGEGGGRAGGRGGRKPSSSQKRHPKASLSRGMPGRTTLTGMTARSATGYPPP 141
            MGGDKGRFGKRIGGCVCTHAIFSDFPPPALSSETLMSTLVVPTFFLPSLSPSLPSSFSPSVAQGLRSARPLPAGSKSTRNSWLPLRGGRGGEGGGRAGGRGGRKPSSSQKRHPKASLSRGMPGRTTLTGMTARSATGYPPP
Sbjct:    1 MGGDKGRFGKRIGGCVCTHAIFSDFPPPALSSETLMSTLVVPTFFLPSLSPSLPSSFSPSVAQGLRSARPLPAGSKSTRNSWLPLRGGRGGEGGGRAGGRGGRKPSSSQKRHPKASLSRGMPGRTTLTGMTARSATGYPPP 141

The following BLAST results are available for this feature:

BLAST of EWM23220.1 vs. NCBI_GenBank

BLAST of EWM23220.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104150\|gb\|EWM23220.1\|	7.387e-92	100.00	hypothetical protein Naga_103244g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7471	rna7471	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications