rna7457, rna7457 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7457
Unique Name	rna7457
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	772
Alignment location	CM002471.1:644382..646956 +

Link to JBrowse

Properties


Property Name	Value
Product	beta-ig-h3 fasciclin
Orig transcript id	gnl\|cribi\|Naga_100967g1.2220.mrna
Orig protein id	gnl\|cribi\|Naga_100967g1.2220
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:644382..646956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100967g1	gene7215	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7457	rna7457-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23234.1	cds7439	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:644382..646956+
coding sequence from alignment at CM002471.1:644382..646956+

mRNA sequence

>rna7457 ID=rna7457|Name=rna7457|organism=Nannochloropsis gaditana|type=mRNA|length=772bp
CATGTTGTGCGTGAAGGAAATTAATCCGTCTTTCCCCAGAGGTTATCAGC
CCTGCAGTATCCCTTCGCTGCCAGGCGTTGAATTTCTCGTTGGCAATTTC
CAACGTACGGTGAATAATTGGGTGCAAGTGAGTACGGCAATTGCAAATTA
TGTGGCTATTTTGTCTTTGTTGTGCAGTGAATCGACCAGGACGGTTATGA
GAGCCACCCTCTTAAGAAGGGCTTTCGACCCCCAACGGAGACCTTGCGTA
CTGGACTCCGCACCGCAACAGTCTTCCCTTGTACTCGTCTCATTCACGAA
CCGATTGCTTCATGATACCCCTATCTTTTCGGATGCAGAGAGCCCAGCTA
TGCCTCTAGGGCGCACCCACGCCCGTCACTCGGTTCCTTCCCTCCTCCTC
CTCCTCCTTCCAGCCCTCGCCCTCGCCTTCAGGCTCCGCCCTTCCCACCC
AAAAGCCCGAGGACTTTCTCTTTGTTTAAAAGCCGCCCACCCGGCCCCTC
TTCACACGCGGCATGCATTCCTGTCCACAACCTCCTCCGCTCTCGTCCCC
GTTCTTCTTCTCCCCTCCTTTCCCTCCCCCTCCCTGGCCTTGGTCAAAGG
AAATGCCCCCCCAAAGGACATGCGGAAAAAGACGGGCGGAAAGTCCACGG
CCGCGAACATGGACGAGGCGATCGAGGCGGGAAGGAAAAGGGTACGTGGG
AGGGAGAGAGGGAGGGAGGGATAGAAGGAGGGAGGTAGGTAGGTGTTGAA
TAGCACGGTATTGAGGAGAACG

protein sequence of rna7457

>rna7457-protein ID=rna7457-protein|Name=rna7457|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MRVLVSLLACAATASAFLLPTPTTRPASALFASTVGAKDIVDTAVDAGSF
KTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKL
TSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVA
TDVEASNGIIHIIDSVLIPGAVAAPAAASKEVGKSLDR

mRNA from alignment at CM002471.1:644382..646956+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7457 ID=rna7457|Name=rna7457|organism=Nannochloropsis gaditana|type=mRNA|length=2575bp|location=Sequence derived from alignment at CM002471.1:644382..646956+ (Nannochloropsis gaditana)
GCAGTACGCAGGGTCAAACCGCTCAAGGACAGAGCTGATATCCAGAGAGT
AGTAGACATGCACTTTGAACTCTCTTTGTGGACATTGAGGGATAAAATCG
ATCGTGTTGTACGAATCGATGGGAACACGGCTCGTTGCTAGATCCGACGG
TGCGAGCTCTCGAAAAGTAATAAAGAAAtaatttcttcttttttagTTAG
GGAGCGATCTCTTGCGTGCAACGATCTATGCGTCTGAAAACATGTACGGG
TATTTCACCAGAACCCTCCGCATGCTCATGAACCAACAAATGTGTGAGTT
CCATAAGATTCCTGCGAGGCATGCACGCGTCAAATGTCTCCGTGTTTGTT
TCGCCTGCCCCTCTGGTTTATTTCTCGCTGATGTTGCCACAGCGTGTTCT
TATTGTCCTAGCGGGAAGTCTCCGCCGGGACGACCAAAACCCTTGCCGAC
TTGGGGCACAACACTCAAACACACGCCCACAATGTGACGAAGAGCACGTT
caaaaagatggaggagcgTGGAATCCAGCTATTCCGGGAGAGATCGTCGG
ATTTTATGAAAAATACCGTACAGGGAGGACTGCCACCTCAGTGTGGTGCG
TCAGGAAGTGCGTGTGGTGTGTTCTGCTTCGTCGTGAATAATTTTGTACC
GCCAGTCGCACACATGCTTGCGCCGAAAGACGTGTCTGAGACGAGCAATG
CGACATGGTGGACACGCCACGGTTTTGACCCGGCGGTCCAATATATTTTG
GTGGTTTGTGGAGGCTGGGTTCAGGCGCGTGGCCGGGCGTGTGCAAAGAC
GTGCGTGGTAACCTCCtgtctctcttccttccgcgTGGTCAGATTCAGGA
CGACGGTGCGCCACGAGGCAAGACTTGCGTTGTTTGGGAGACTTGGACTG
TGTCGTTCAAGGTTTCCTTACCGTGATGATTTGTGACGTGATCACTGTAT
GTGCCACGCGACTGAAAATATGTTCTGTGTCGGAGCCTCCGGGGACCGGT
CCACACCAATCGTCCGTACTTGCAAGCACAGAGATCTGTTTTCGAATATG
TCTCGACCACATCACTCTGTACCTATACTTACACAAGGGAACTGGTTCTC
CATGCGTAGTCAGATGGTCATGAAAAGAGGCAACGGCACGTGTAGTAGCC
CTTCCTCGTGGTTCGACATGGTCAGATCGATACCACGTACTCATCCATTT
TCAGATCTCCCATCTTCGCGCTGAATAAGTCGGGTCCTTATTTTTCTCCA
CAACCTTCAGATAAACTTGTCTATACTCTCTAGTACAATGCGTGTCCTAG
TTTCTCTCTTGGCGTGcgcggccacggcctctgctttccttctccccact
CCTACCACGCGTCCTGCCTCGGCGCTCTTTGCGTCCACTGTGGGCGCCAA
GGACATCGTCGACACGGCCGTCGACGCAGGGTCCTTCAAGACGCTTGCCA
CCGCACTCACGGCCGCCGGGTACGtgagcagaaggaggaaaacgacgGTG
TCAGTGTAGAGTGCCGCCAAAGGTGTCTCATTGTTGCGTCACTCCTCACC
TTCGTACGCATCATCTTTCTTTCACCACAGCCTCGTGGAGACGCTGAAGG
GACCCGGCCCTTTCACGGTAAGAGTCTTTATTCTGTGGGATGATCAGTAT
GCCGTGCCCTGTCACCCGCTTGTTTCctcactccccctccctcccttcct
ccctccctccctccctcccgtcgctcATCCAGGTGTTCGCACCCACCGAC
GAGGCCTTCAACAAACTCGAGGCAGCGACCCTGAACGCTCTTCTGGCCGA
CAAGGAAAAACTTACCTCCATTCTTACTTACCACGTCGTGTCAGGTGAGA
GGGAGTCCTGAGTTTCCCTCCTGAGGCACCCCAACCTCCACATGCGCTTG
CAAAAAGGAATATGGACGAGGGAGATAGGAACATAAAAGCAGTACaaaca
aaaaaagaaaagacaaggaagaagtgaAGAAAGCTTGTCCTATCTATCCT
CatcttcgccctccctcccgacccgcCCTCAGGCCGCGTGCCCGCTGCCG
ACGTGCTGAAGCTGACCAGCGCCAAGACTGTGCAAGGCGGAGACGTTGCT
GTTGCCGTCTCCAGCACCGGCGTCAAGGTAGGACGGGCACATAGGCATAC
ATaatcccctctttctcctctgttttcttcttccctctccctctcctcgt
ctctcGTGTCGCGGTGTGCCCGactggcctccctccctcctccctccgtc
tgccTGACGGGAACTTCGCGTTCTGaccactgcctcccctccccctccca
cctccttaGGTCAACAACGCGAACGTGGTGGcgacggacgtggaggcctc
AAACGGCATCATCCACATCATCGAttccgtcctcatccccgGTGCGGTCG
CCGCCCCCGCGGCTGCGTCTaaggaggtagggaaatCACTGGATAGatag
aaaggagaggaaagcgggctTACAtgtcccttcttttttctACTTATGGA
TGAAAAGCCGCCCAGAACCTGGACACTCATAGCATTCTCCTGGTCTCtca
ccccctctcctcgccctccctcact

Coding sequence (CDS) from alignment at CM002471.1:644382..646956+

>rna7457 ID=rna7457|Name=rna7457|organism=Nannochloropsis gaditana|type=CDS|length=2835bp|location=Sequence derived from alignment at CM002471.1:644382..646956+ (Nannochloropsis gaditana)
ATGCGTGTCCTAGTTTCTCTCTTGGCGTGcgcggccacggcctctgcttt
ccttctccccactCCTACCACGCGTCCTGCCTCGGCGCTCTTTGCGTCCA
CTGTGGGCGCCAAGGACATCGTCGACACGGCCGTCGACGCAGGGTCCTTC
AAGACGCTTGCCACCGCACTCACGGCCGCCGGCCTCGTGGAGACGCTGAA
GGGACCCGGCCCTTTCACGGTGTTCGCACCCACCGACGAGGCCTTCAACA
AACTCGAGGCAGCGACCCTGAACGCTCTTCTGGCCGACAAGGAAAAACTT
ACCTCCATTCTTACTTACCACGTCGTGTCAGGCCGCGTGCCCGCTGCCGA
CGTGCTGAAGCTGACCAGCGCCAAGACTGTGCAAGGCGGAGACGTTGCTG
TTGCCGTCTCCAGCACCGGCGTCAAGGTCAACAACGCGAACGTGGTGGcg
acggacgtggaggcctcAAACGGCATCATCCACATCATCGAttccgtcct
catccccgGTGCGGTCGCCGCCCCCGCGGCTGCGTCTaaggaggtaggga
aatCACTGGATAGatagATGCGTGTCCTAGTTTCTCTCTTGGCGTGcgcg
gccacggcctctgctttccttctccccactCCTACCACGCGTCCTGCCTC
GGCGCTCTTTGCGTCCACTGTGGGCGCCAAGGACATCGTCGACACGGCCG
TCGACGCAGGGTCCTTCAAGACGCTTGCCACCGCACTCACGGCCGCCGGC
CTCGTGGAGACGCTGAAGGGACCCGGCCCTTTCACGGTGTTCGCACCCAC
CGACGAGGCCTTCAACAAACTCGAGGCAGCGACCCTGAACGCTCTTCTGG
CCGACAAGGAAAAACTTACCTCCATTCTTACTTACCACGTCGTGTCAGGC
CGCGTGCCCGCTGCCGACGTGCTGAAGCTGACCAGCGCCAAGACTGTGCA
AGGCGGAGACGTTGCTGTTGCCGTCTCCAGCACCGGCGTCAAGGTCAACA
ACGCGAACGTGGTGGcgacggacgtggaggcctcAAACGGCATCATCCAC
ATCATCGAttccgtcctcatccccgGTGCGGTCGCCGCCCCCGCGGCTGC
GTCTaaggaggtagggaaatCACTGGATAGatagATGCGTGTCCTAGTTT
CTCTCTTGGCGTGcgcggccacggcctctgctttccttctccccactCCT
ACCACGCGTCCTGCCTCGGCGCTCTTTGCGTCCACTGTGGGCGCCAAGGA
CATCGTCGACACGGCCGTCGACGCAGGGTCCTTCAAGACGCTTGCCACCG
CACTCACGGCCGCCGGCCTCGTGGAGACGCTGAAGGGACCCGGCCCTTTC
ACGGTGTTCGCACCCACCGACGAGGCCTTCAACAAACTCGAGGCAGCGAC
CCTGAACGCTCTTCTGGCCGACAAGGAAAAACTTACCTCCATTCTTACTT
ACCACGTCGTGTCAGGCCGCGTGCCCGCTGCCGACGTGCTGAAGCTGACC
AGCGCCAAGACTGTGCAAGGCGGAGACGTTGCTGTTGCCGTCTCCAGCAC
CGGCGTCAAGGTCAACAACGCGAACGTGGTGGcgacggacgtggaggcct
cAAACGGCATCATCCACATCATCGAttccgtcctcatccccgGTGCGGTC
GCCGCCCCCGCGGCTGCGTCTaaggaggtagggaaatCACTGGATAGata
gATGCGTGTCCTAGTTTCTCTCTTGGCGTGcgcggccacggcctctgctt
tccttctccccactCCTACCACGCGTCCTGCCTCGGCGCTCTTTGCGTCC
ACTGTGGGCGCCAAGGACATCGTCGACACGGCCGTCGACGCAGGGTCCTT
CAAGACGCTTGCCACCGCACTCACGGCCGCCGGCCTCGTGGAGACGCTGA
AGGGACCCGGCCCTTTCACGGTGTTCGCACCCACCGACGAGGCCTTCAAC
AAACTCGAGGCAGCGACCCTGAACGCTCTTCTGGCCGACAAGGAAAAACT
TACCTCCATTCTTACTTACCACGTCGTGTCAGGCCGCGTGCCCGCTGCCG
ACGTGCTGAAGCTGACCAGCGCCAAGACTGTGCAAGGCGGAGACGTTGCT
GTTGCCGTCTCCAGCACCGGCGTCAAGGTCAACAACGCGAACGTGGTGGc
gacggacgtggaggcctcAAACGGCATCATCCACATCATCGAttccgtcc
tcatccccgGTGCGGTCGCCGCCCCCGCGGCTGCGTCTaaggaggtaggg
aaatCACTGGATAGatagATGCGTGTCCTAGTTTCTCTCTTGGCGTGcgc
ggccacggcctctgctttccttctccccactCCTACCACGCGTCCTGCCT
CGGCGCTCTTTGCGTCCACTGTGGGCGCCAAGGACATCGTCGACACGGCC
GTCGACGCAGGGTCCTTCAAGACGCTTGCCACCGCACTCACGGCCGCCGG
CCTCGTGGAGACGCTGAAGGGACCCGGCCCTTTCACGGTGTTCGCACCCA
CCGACGAGGCCTTCAACAAACTCGAGGCAGCGACCCTGAACGCTCTTCTG
GCCGACAAGGAAAAACTTACCTCCATTCTTACTTACCACGTCGTGTCAGG
CCGCGTGCCCGCTGCCGACGTGCTGAAGCTGACCAGCGCCAAGACTGTGC
AAGGCGGAGACGTTGCTGTTGCCGTCTCCAGCACCGGCGTCAAGGTCAAC
AACGCGAACGTGGTGGcgacggacgtggaggcctcAAACGGCATCATCCA
CATCATCGAttccgtcctcatccccgGTGCGGTCGCCGCCCCCGCGGCTG
CGTCTaaggaggtagggaaatCACTGGATAGatag

Synonyms

Publications