EWM23234.1, cds7439 (CDS) Nannochloropsis gaditana

Overview
NameEWM23234.1
Unique Namecds7439
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:645669..645850 +
Alignment locationCM002471.1:645962..645998 +
Alignment locationCM002471.1:646114..646225 +
Alignment locationCM002471.1:646414..646508 +
Alignment locationCM002471.1:646691..646831 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23234.1
Productbeta-ig-h3 fasciclin
Orig transcript idgnl|cribi|Naga_100967g1.2220.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:645669..645850 +
CM002471.1supercontigCM002471.1:645962..645998 +
CM002471.1supercontigCM002471.1:646114..646225 +
CM002471.1supercontigCM002471.1:646414..646508 +
CM002471.1supercontigCM002471.1:646691..646831 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000782FAS1_domain
Homology
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|585104182|gb|EWM23234.1| (beta-ig-h3 fasciclin [Nannochloropsis gaditana])

HSP 1 Score: 362.844 bits (930), Expect = 1.461e-126
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MRVLVSLLACAATASAFLLPTPTTRPASALFASTVGAKDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIPGAVAAPAAASKEVGKSLDR 188
            MRVLVSLLACAATASAFLLPTPTTRPASALFASTVGAKDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIPGAVAAPAAASKEVGKSLDR
Sbjct:    1 MRVLVSLLACAATASAFLLPTPTTRPASALFASTVGAKDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIPGAVAAPAAASKEVGKSLDR 188          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|917616216|ref|WP_052185282.1| (hypothetical protein [Pseudomonas pelagia])

HSP 1 Score: 188.348 bits (477), Expect = 3.552e-58
Identity = 95/134 (70.90%), Postives = 114/134 (85.07%), Query Frame = 0
Query:   37 AKDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIPG 170
            A DIVDTAV AGSF+TL TA+ AAGLVETLKG GPFTVFAPTDEAF K+  A L ALLAD+EKLT +LTYHVVSG+V AADV+ +TSA+TVQGG + +  +S GVKVN+ANV ATD++ SNG+IH+ID+VL+PG
Sbjct:   18 AADIVDTAVAAGSFETLVTAVQAAGLVETLKGEGPFTVFAPTDEAFAKIPQADLEALLADREKLTQVLTYHVVSGKVMAADVISMTSAETVQGGTLTID-ASDGVKVNDANVTATDIKVSNGVIHVIDTVLMPG 150          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|502677515|ref|WP_012913228.1| (beta-Ig-H3/fasciclin [Pirellula staleyi] >gi|283440527|gb|ADB18969.1| beta-Ig-H3/fasciclin [Pirellula staleyi DSM 6068])

HSP 1 Score: 186.808 bits (473), Expect = 2.515e-57
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 0
Query:   39 DIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIP 169
            DIVDTAV AGSFKTL  A+ AAGLVETLKG GPFTVFAPTDEAF KL A T+ ALL DKEKLT+ILTYHVV G+V AADV+KL SAKTV G +V + VS   VKVN+ANVV TD+E +NG+IH+ID+V++P
Sbjct:   36 DIVDTAVGAGSFKTLVAAVKAAGLVETLKGEGPFTVFAPTDEAFAKLPAGTVEALLKDKEKLTAILTYHVVPGKVMAADVVKLKSAKTVNGKEVTITVSEGSVKVNDANVVKTDIETTNGVIHVIDTVILP 166          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|1027800307|ref|WP_063719059.1| (hypothetical protein [Leptolyngbya valderiana] >gi|1025907623|gb|OAB56475.1| hypothetical protein AY599_22195 [Leptolyngbya valderiana BDU 20041])

HSP 1 Score: 182.57 bits (462), Expect = 1.056e-55
Identity = 89/132 (67.42%), Postives = 113/132 (85.61%), Query Frame = 0
Query:   38 KDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIP 169
            K+IV+TAV+AG+F TLATALT AGL+ETL G GPFTVFAPTDEAF K+ AA L A+LADKE LTSILTYHVV+G+V ++DV+ L+SA TVQG D+ + V+  GV+V++ANVVA D+EASNG+IH+ID+V+ P
Sbjct:   33 KNIVETAVEAGNFTTLATALTEAGLIETLSGEGPFTVFAPTDEAFAKIPAADLEAILADKELLTSILTYHVVAGKVMSSDVVNLSSATTVQGSDIDITVTEGGVQVDDANVVAVDIEASNGVIHVIDTVITP 164          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|1097984977|emb|SFN10012.1| (Uncaracterized surface protein containing fasciclin (FAS1) repeats [Dokdonella immobilis])

HSP 1 Score: 179.489 bits (454), Expect = 1.516e-54
Identity = 95/132 (71.97%), Postives = 106/132 (80.30%), Query Frame = 0
Query:   38 KDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIP 169
            KDIVDTAV AGSFKTLATAL AAGLV+TLKGPGPFTVFAPTD AF KL A T+  LL DK KLT+ILTYHVV+G V AADV+KL SAKTV G  VA+ V    V V+NA V   DVEASNG+IH+ID+VL+P
Sbjct:   31 KDIVDTAVAAGSFKTLATALEAAGLVDTLKGPGPFTVFAPTDAAFAKLPAGTVEGLLKDKPKLTAILTYHVVAGNVKAADVVKLDSAKTVNGQSVAIKVVDGKVMVDNATVTTADVEASNGVIHVIDTVLLP 162          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|938892362|ref|WP_054676964.1| (fasciclin [Photobacterium sp. JCM 19050])

HSP 1 Score: 178.718 bits (452), Expect = 3.050e-54
Identity = 96/135 (71.11%), Postives = 109/135 (80.74%), Query Frame = 0
Query:   38 KDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALL--ADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIPG 170
            KDIVDTAV  GSF TL TA+ AAGLV+TLKG GPFTVFAPTDEAF KL   T+  LL   +KE LTSILTYHVVSG+V AADV+ LTSAKTVQG  V + V S  VKV+NANVV TDV+ASNG+IH+ID+VL+PG
Sbjct:   29 KDIVDTAVANGSFTTLVTAVKAAGLVDTLKGDGPFTVFAPTDEAFAKLPEGTVQKLLLPENKELLTSILTYHVVSGKVMAADVVNLTSAKTVQGESVEINVDSGKVKVDNANVVLTDVKASNGVIHVIDAVLMPG 163          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|1210104371|dbj|BAY23501.1| (beta-Ig-H3/fasciclin [Calothrix sp. NIES-2100])

HSP 1 Score: 177.563 bits (449), Expect = 3.610e-54
Identity = 90/132 (68.18%), Postives = 108/132 (81.82%), Query Frame = 0
Query:   39 DIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIPG 170
            DIVDTAV+AGSF TL  A+ AAGLV+TLKG GPFTVFAPTDEAF+KL A T+++LL D  +LT ILTYHVVSG+V AADV+ L SA TV+G  V +  S+ GVK+N+ANVV  DVEA NG+IH+ID+VLIPG
Sbjct:    3 DIVDTAVNAGSFNTLVAAVQAAGLVDTLKGQGPFTVFAPTDEAFSKLPAGTVDSLLQDIPQLTKILTYHVVSGKVLAADVVNLDSAPTVEGSSVQIDASNGGVKINDANVVTPDVEADNGVIHVIDTVLIPG 134          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|930051788|ref|WP_054155058.1| (hypothetical protein [beta proteobacterium AAP51] >gi|929662892|gb|KPF45925.1| hypothetical protein D621_17340 [beta proteobacterium AAP51])

HSP 1 Score: 176.022 bits (445), Expect = 2.746e-53
Identity = 94/135 (69.63%), Postives = 109/135 (80.74%), Query Frame = 0
Query:   35 VGAKDIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIP 169
            V AKDIVDTAV AGSFKTLATAL AAGLVETLKG GPFTVFAPTDEAF K+  A L+ALL DK KLT++LTYHVV G+V A DV K    KTVQGG + +  ++ GV VNNA VV TD+EASNG+IH+ID+V++P
Sbjct:   17 VQAKDIVDTAVAAGSFKTLATALQAAGLVETLKGKGPFTVFAPTDEAFAKIPKADLDALLKDKAKLTAVLTYHVVPGKVMAKDV-KAGMVKTVQGGSLTIG-TTGGVTVNNAKVVKTDIEASNGVIHVIDTVVMP 149          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|1056325985|ref|WP_067776547.1| (fasciclin [Nostoc sp. NIES-3756] >gi|953513970|dbj|BAT56657.1| Beta-Ig-H3/fasciclin (plasmid) [Nostoc sp. NIES-3756] >gi|1210122551|dbj|BAY41673.1| beta-Ig-H3/fasciclin (plasmid) [Nostoc sp. NIES-2111])

HSP 1 Score: 175.252 bits (443), Expect = 3.506e-53
Identity = 90/131 (68.70%), Postives = 106/131 (80.92%), Query Frame = 0
Query:   39 DIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIP 169
            DIVDTAV AGSF TL  A+ AAGLV+TLKGPGPFTVFAPTDEAF+KL A T++ALL D  KLT ILTYHVVSG+V AADV+ L SA TV+G +V +  S+ GVK+N+A V   DVEA NG+IH+ID+VLIP
Sbjct:    3 DIVDTAVGAGSFNTLVAAVQAAGLVDTLKGPGPFTVFAPTDEAFSKLPAGTVDALLKDIPKLTKILTYHVVSGKVLAADVVNLDSAPTVEGSNVRIDASNGGVKINDATVTTPDVEADNGVIHVIDTVLIP 133          
BLAST of EWM23234.1 vs. NCBI_GenBank
Match: gi|1096253401|ref|WP_071191397.1| (fasciclin [Trichormus sp. NMC-1])

HSP 1 Score: 174.481 bits (441), Expect = 5.258e-53
Identity = 92/131 (70.23%), Postives = 104/131 (79.39%), Query Frame = 0
Query:   39 DIVDTAVDAGSFKTLATALTAAGLVETLKGPGPFTVFAPTDEAFNKLEAATLNALLADKEKLTSILTYHVVSGRVPAADVLKLTSAKTVQGGDVAVAVSSTGVKVNNANVVATDVEASNGIIHIIDSVLIP 169
            DIVDTA +AGSF TL  A+ AAGLV+TLKGPGPFTVFAPTDEAF KL   T++ALL D  KL  ILTYHVVSG+V AADV+KL SA TVQG DV +  +S GVK+NNANV   DV A NG+IHIID+VLIP
Sbjct:    3 DIVDTAANAGSFNTLVAAVQAAGLVDTLKGPGPFTVFAPTDEAFAKLPPGTVDALLKDIPKLKKILTYHVVSGKVLAADVVKLKSATTVQGSDVKID-ASNGVKINNANVATPDVAADNGVIHIIDTVLIP 132          
The following BLAST results are available for this feature:
BLAST of EWM23234.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104182|gb|EWM23234.1|1.461e-126100.00beta-ig-h3 fasciclin [Nannochloropsis gaditana][more]
gi|917616216|ref|WP_052185282.1|3.552e-5870.90hypothetical protein [Pseudomonas pelagia][more]
gi|502677515|ref|WP_012913228.1|2.515e-5771.76beta-Ig-H3/fasciclin [Pirellula staleyi] >gi|28344... [more]
gi|1027800307|ref|WP_063719059.1|1.056e-5567.42hypothetical protein [Leptolyngbya valderiana] >gi... [more]
gi|1097984977|emb|SFN10012.1|1.516e-5471.97Uncaracterized surface protein containing fascicli... [more]
gi|938892362|ref|WP_054676964.1|3.050e-5471.11fasciclin [Photobacterium sp. JCM 19050][more]
gi|1210104371|dbj|BAY23501.1|3.610e-5468.18beta-Ig-H3/fasciclin [Calothrix sp. NIES-2100][more]
gi|930051788|ref|WP_054155058.1|2.746e-5369.63hypothetical protein [beta proteobacterium AAP51] ... [more]
gi|1056325985|ref|WP_067776547.1|3.506e-5368.70fasciclin [Nostoc sp. NIES-3756] >gi|953513970|dbj... [more]
gi|1096253401|ref|WP_071191397.1|5.258e-5370.23fasciclin [Trichormus sp. NMC-1][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7457rna7457Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications