rna7451, rna7451 (mRNA) Nannochloropsis gaditana

Overview
Namerna7451
Unique Namerna7451
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length629
Alignment locationCM002471.1:622393..623712 +

Link to JBrowse

Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100966g2.5254.mrna
Orig protein idgnl|cribi|Naga_100966g2.5254
GeneSDR
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:622393..623712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDRgene7209Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7451rna7451-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23240.1cds7433Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7451 ID=rna7451|Name=rna7451|organism=Nannochloropsis gaditana|type=mRNA|length=629bp
CAATACAGAGTAGCATTGATGAATGCATGAGGATACTAAAAAAGCCTGGA
GAGCGTTAAACATTGGACAAGGAGGCGCGACTGACGCACCAACGATGCTT
CGTCGGATCTCCTTCTTTTCTCCCTCCCCCTATTGCTACACGTTATTCCT
CTTGTCTTTTTTTTCGCACGCTTTGGCGTTCTCCTTTCTTCATATGTCAT
CATCTCCTCTTCAGCCGCTACAAGGAAAAGTTGCCCTCGTCACTGGGGCC
TCGCGTGGAATAGGAAGAGGCATCGCGTTTGAACTCGCCGTGGCAGGCGC
GACAGTCTACGCAACGGCCCGGTCGTATGGAGAAAAGGAATGCACGGAAG
CCACACTAGGCGGCACACTGACGACCCTGGCAGAGGACGTCATGGAGGCC
CTCATCGACATCCCTGGGGGAGGGAAGGCGGCGAATGGGCGGGTGATTCC
CCTCCGCTGCGACCACGCCGTCGACCCTCAGATCTACAGCGTCCTTGACA
CGGTTCGCCGGGACGAAGGCCGCCTGGATTTTTTGGTGAACAATGCGTTT
GCCATTCCTCCTTCGGGGGTGGCCGGCATGGTGGGGAAACCCTTCTGGGA
ACAAGGGGCGGAGGTGCGAGGGAGGGAGG
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protein sequence of rna7451

>rna7451-protein ID=rna7451-protein|Name=rna7451|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGYVESP
RFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTD
VDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPFVPDIKLPLSMMGARPS
E
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mRNA from alignment at CM002471.1:622393..623712+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7451 ID=rna7451|Name=rna7451|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp|location=Sequence derived from alignment at CM002471.1:622393..623712+ (Nannochloropsis gaditana)
tctttctgccCGCCGTCTCTTATCGCGCCCCCTGGCTCccatccacccct
ccctccctccctccctccctccctccctgtccacaGGCCTGGACCGCCTT
TCTAGGGACATGGCGGTGGAgctgaaaaaggaaggggttgcgtccttctc
cctctggcCAGGCGTGGTAATGACCGAACGGATGGCGGAGATCCGAAAAA
ACGACCCGGAgaagtgggagagggagatgagcgTCGGAGAAGGgtgaggg
caggagggagggaaggagggcggaaggggttGCACGGTGAAGAGACCTTA
ACATGAATCCGTTGGAGTAGACTCTTCCCTCCGGTTGTTGACCCGGTCTC
TCTCATCTGTTCCCTCCGATTCAATGTCTCTCTCGtccatcctcatcatc
cccccgcccggcaAGCTACGTGGAGTCCCCCCGCTTTGTGGGCCGTGctc
ttgctgccctcctttcctctccttcctcctctccctcctcctcctcctcc
ccctcctcctcctccctcatggaCCGCAGCGGTACCATCCAAAtcgtggc
ggaggtggcACGAGAATGGGGGGTGACGGATGTAGACGGGAATCAACCGC
CTTCCATCCGTTCCTTGCAATTTCTGGtgggcctctccctcccttgcttt
ttgATCGAACCTGTCCACGCCATCCGTATCCATCACCTTTGAATTGTTTC
CCGTTCTTGGTCGGcattttctccctttccccccccccttttttctaaTA
TCTGGGGACTTAGACCAAATTCTGTCGATCTCAGCATCACTTGAACACCA
CCCCCTTGTCTCTCTTCATTTCTTACTCCCCTATCCTTTCACAGCTGCCC
AATTATGTGTTGAAAGATCTCTTTGCCTCAGCGCCCTACCTACAGCCTTT
CGTGCCGGACATCAAACTTCCTTTGTCCATGATGGGTGCACGGCCCTCGG
AATAAGGCTTGACTTATAGAGCGTCACTTAGACTATGGCGTGTCTAAGGA
AGGGAATGCTGGTGGGTGAAGGTTAACGATGTGTATCGGGGTGCCTCAGG
CTGCATAGACCACCATAAACGAATATCTTTCGCTTTTTAAAAGAAGATCG
GTGCAAAGGTCTACTTATGGGGTCCatgcttttccttttccacgaAATAT
AGCAAAGAGAAATTATTGTAATTGCCCAAGGCAGGCAAGCAACTTTCCGA
GAAAGATCCTTAAGTTGCACATGAGGTGCATACAGGCTACATTCTTATAC
AGAGAGAAGCGTCTTTACGCATAATCCATTGAGTGCACATCGAAGAATGC
CGCTCGAGAGCTTTCCAACA
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Coding sequence (CDS) from alignment at CM002471.1:622393..623712+

>rna7451 ID=rna7451|Name=rna7451|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at CM002471.1:622393..623712+ (Nannochloropsis gaditana)
ATGGCGGTGGAgctgaaaaaggaaggggttgcgtccttctccctctggcC
AGGCGTGGTAATGACCGAACGGATGGCGGAGATCCGAAAAAACGACCCGG
AgaagtgggagagggagatgagcgTCGGAGAAGGCTACGTGGAGTCCCCC
CGCTTTGTGGGCCGTGctcttgctgccctcctttcctctccttcctcctc
tccctcctcctcctcctccccctcctcctcctccctcatggaCCGCAGCG
GTACCATCCAAAtcgtggcggaggtggcACGAGAATGGGGGGTGACGGAT
GTAGACGGGAATCAACCGCCTTCCATCCGTTCCTTGCAATTTCTGCTGCC
CAATTATGTGTTGAAAGATCTCTTTGCCTCAGCGCCCTACCTACAGCCTT
TCGTGCCGGACATCAAACTTCCTTTGTCCATGATGGGTGCACGGCCCTCG
GAATAAATGGCGGTGGAgctgaaaaaggaaggggttgcgtccttctccct
ctggcCAGGCGTGGTAATGACCGAACGGATGGCGGAGATCCGAAAAAACG
ACCCGGAgaagtgggagagggagatgagcgTCGGAGAAGGCTACGTGGAG
TCCCCCCGCTTTGTGGGCCGTGctcttgctgccctcctttcctctccttc
ctcctctccctcctcctcctcctccccctcctcctcctccctcatggaCC
GCAGCGGTACCATCCAAAtcgtggcggaggtggcACGAGAATGGGGGGTG
ACGGATGTAGACGGGAATCAACCGCCTTCCATCCGTTCCTTGCAATTTCT
GCTGCCCAATTATGTGTTGAAAGATCTCTTTGCCTCAGCGCCCTACCTAC
AGCCTTTCGTGCCGGACATCAAACTTCCTTTGTCCATGATGGGTGCACGG
CCCTCGGAATAAATGGCGGTGGAgctgaaaaaggaaggggttgcgtcctt
ctccctctggcCAGGCGTGGTAATGACCGAACGGATGGCGGAGATCCGAA
AAAACGACCCGGAgaagtgggagagggagatgagcgTCGGAGAAGGCTAC
GTGGAGTCCCCCCGCTTTGTGGGCCGTGctcttgctgccctcctttcctc
tccttcctcctctccctcctcctcctcctccccctcctcctcctccctca
tggaCCGCAGCGGTACCATCCAAAtcgtggcggaggtggcACGAGAATGG
GGGGTGACGGATGTAGACGGGAATCAACCGCCTTCCATCCGTTCCTTGCA
ATTTCTGCTGCCCAATTATGTGTTGAAAGATCTCTTTGCCTCAGCGCCCT
ACCTACAGCCTTTCGTGCCGGACATCAAACTTCCTTTGTCCATGATGGGT
GCACGGCCCTCGGAATAA
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Synonyms
Publications