EWM23240.1, cds7433 (CDS) Nannochloropsis gaditana

Overview
NameEWM23240.1
Unique Namecds7433
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:622502..622635 +
Alignment locationCM002471.1:622808..623018 +
Alignment locationCM002471.1:623237..623347 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23240.1
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100966g2.5254.mrna
GeneSDR
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:622502..622635 +
CM002471.1supercontigCM002471.1:622808..623018 +
CM002471.1supercontigCM002471.1:623237..623347 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|585104193|gb|EWM23240.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 300.056 bits (767), Expect = 6.225e-103
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPFVPDIKLPLSMMGARPSE 151
            MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPFVPDIKLPLSMMGARPSE
Sbjct:    1 MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPFVPDIKLPLSMMGARPSE 151          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|553193064|ref|XP_005855702.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422293354|gb|EKU20654.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 230.72 bits (587), Expect = 7.170e-76
Identity = 126/151 (83.44%), Postives = 126/151 (83.44%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPFVPDIKLPLSMMGARPSE 151
            MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSP SSSSPSSSSLMDRSGTIQIVAE                        LPNYVLKDLFASAPYLQPFVPDIKLPLSMMGARPSE
Sbjct:    1 MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSP-SSSSPSSSSLMDRSGTIQIVAE------------------------LPNYVLKDLFASAPYLQPFVPDIKLPLSMMGARPSE 126          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|299470910|emb|CBN79894.1| (Short-chain dehydrogenase/reductase [Ectocarpus siliculosus])

HSP 1 Score: 103.219 bits (256), Expect = 3.442e-23
Identity = 56/147 (38.10%), Postives = 88/147 (59.86%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWEREMSVGEGY-VESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQP-FVPDIKLPLSMM 145
            MA+EL++E VA  S++PG+V TE+M  +   +P ++E    +     +E+P F GRA+AAL + P              ++ ++G +QIVAE+A+++G TDV G+ PPSIRSL+FLLP Y+   +      +    VPD  LP+ +M
Sbjct:  272 MAIELEEEKVAVVSVYPGIVKTEKMKSLMTKNPAEFEANTGIALSSPMETPFFTGRAVAALAADPE-------------ILKKTGKVQIVAELAKQYGFTDVGGDTPPSIRSLRFLLPTYLFPKILPEGTKIDTSSVPDWLLPMFIM 405          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|551597753|ref|XP_005780959.1| (short-chain dehydrogenase/reductase [Emiliania huxleyi CCMP1516] >gi|485633659|gb|EOD28530.1| short-chain dehydrogenase/reductase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 100.908 bits (250), Expect = 1.686e-22
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAEI-RKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAP----YLQPFVPDIKLPLSMMGARPSE 151
            MA +LK  GVAS SL+PGVV TE   E+ R+ +  +    + +  G  ESP F GRA+AAL           +   S +++ RSG +++VAE+ARE G +D+DG++PPSIRSL +L PN+V   + A       +++  VPDI LP S+  + P E
Sbjct:  203 MAFQLKPHGVASISLYPGVVKTEGNLEMERRGEWAEASGGLDLEAG--ESPAFSGRAVAAL-----------ARLDSEAMLARSGRVEVVAELARELGFSDIDGSRPPSIRSLAYLCPNFVFPSIEAGGGTVPRWVRDNVPDINLPWSIFASPPPE 345          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|676383491|ref|XP_009035024.1| (hypothetical protein AURANDRAFT_23211 [Aureococcus anophagefferens] >gi|323454332|gb|EGB10202.1| hypothetical protein AURANDRAFT_23211 [Aureococcus anophagefferens])

HSP 1 Score: 99.3673 bits (246), Expect = 3.734e-22
Identity = 62/159 (38.99%), Postives = 92/159 (57.86%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAEIRKNDPEKWER-----EMSVGEGYVESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASA-----PYLQPFVPDIKLPLSMMGARP 149
            MA++LKK GVA+ +L+PG+V TE  A +   D   W+      +++VGE    +P F GR L ALL  P +            L+ RSG ++++AE+A E+G  DVDG +P SIRSL++LLPN+V   +   A      +++  VPD+ LP S+  A P
Sbjct:  185 MALQLKKHGVATTALYPGLVRTE--ANLEMVDMGTWDEASGGLDLAVGE----TPAFSGRGLVALLGLPQAD-----------LLARSGNVEVIAELADEFGFDDVDGARPCSIRSLRYLLPNFVFPQVEKEAGKPVPAWIRDNVPDVLLPWSVFSAGP 326          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|738025943|ref|WP_035984861.1| (short-chain dehydrogenase [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 97.4413 bits (241), Expect = 1.909e-21
Identity = 64/149 (42.95%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERM----AEIRKNDPEKWEREMSVGEGYV-ESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPF---VPDIKLP 141
            MAVELKK  V S S+WPG+V TE M    AE+            S+   Y  E+P   GRA+AAL + P              ++ RSG +QIVAE+ARE+GV D DG +P S+RSL+F+LP        A+ P LQP+   VPD++LP
Sbjct:  188 MAVELKKHRVTSLSIWPGIVGTELMTQFAAEMGLGGTAGGSAADSIQAQYNWETPLLTGRAIAALAADPE-------------VLRRSGQVQIVAELAREYGVVDADGQRPASLRSLRFVLP--------AAVPGLQPYADWVPDLELP 315          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|219118606|ref|XP_002180072.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408329|gb|EEC48263.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 97.0561 bits (240), Expect = 2.966e-21
Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAE-IRKNDPEKWEREMSVGEGYVESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVL----KDLFASAPYLQPFVPDIKLPLSMM 145
            MAVEL  E +   S WPGVV TER  E ++K D   WE+ + +     E+P F G+A+ A  + PS+             M ++GT Q+VAE++ E+   DV+GN+PPSIRSL+FLLP+Y      +D+          +PD KLP  +M
Sbjct:  199 MAVELTPEDICVVSFWPGVVDTERTQESVKKGD---WEKYVGLPLDNAETPGFTGKAIIATATDPSN-------------MRKTGTYQVVAELSEEYNFFDVNGNRPPSIRSLRFLLPSYAFDQATRDMVPGW-----MIPDWKLPFWVM 327          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|518321219|ref|WP_019491426.1| (short-chain dehydrogenase [Calothrix sp. PCC 7103])

HSP 1 Score: 93.9745 bits (232), Expect = 3.201e-20
Identity = 64/159 (40.25%), Postives = 93/159 (58.49%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAEI--RKNDPEKWEREMSV-GEGYV-ESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPF---VPDIKL--PLSMMGARPS 150
            MAVELK   VAS S+WPG+V TE  + +  + N+ +  +   S+  E Y  E+P   GR +A L           +  SSSS+M R+G +QIVAE+AR++G+ D DGN+P S+RSL+F+LP           P L+ +   +PDIK+  PL ++GA  S
Sbjct:  183 MAVELKPHNVASVSIWPGIVGTEHFSSLADQFNEQDTTDPMQSIFSERYNWETPLLTGRVIAHL-----------TGESSSSIMRRTGKVQIVAEIARQYGILDQDGNRPVSLRSLRFVLP--------FGLPALRKYSSLIPDIKVPWPLLLVGALSS 322          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|504963532|ref|WP_015150634.1| (dehydrogenase [Oscillatoria acuminata] >gi|428003170|gb|AFY84013.1| dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein [Oscillatoria acuminata PCC 6304])

HSP 1 Score: 93.2041 bits (230), Expect = 8.166e-20
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTERMAEIRKN--DPEKWEREMS-VGEGYV-ESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPF---VPDIKLPLSMM 145
            MAVELK   VAS S+WPG+V TE+M+ +       E  +R+ S   E Y  E+P   GRA+AAL + P+             +M  +G +QIVAEVA+ +G+ D DG  P S+RSL+FLLP       FA  P L+P+   +P++ LP S+M
Sbjct:  186 MAVELKPYNVASLSIWPGIVGTEQMSSMADQMAASETNDRQFSGFQERYNWETPLLTGRAIAALAADPT-------------VMQHTGRVQIVAEVAQRYGLVDEDGTSPGSLRSLRFLLP-------FA-VPQLRPYANLIPNLNLPWSLM 316          
BLAST of EWM23240.1 vs. NCBI_GenBank
Match: gi|504995138|ref|WP_015182240.1| (dehydrogenase [Microcoleus sp. PCC 7113] >gi|428252130|gb|AFZ18089.1| dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein [Microcoleus sp. PCC 7113])

HSP 1 Score: 92.8189 bits (229), Expect = 8.648e-20
Identity = 61/148 (41.22%), Postives = 84/148 (56.76%), Query Frame = 0
Query:    1 MAVELKKEGVASFSLWPGVVMTE---RMAEIRKNDPEKWEREMSVGEGYV-ESPRFVGRALAALLSSPSSSPSSSSSPSSSSLMDRSGTIQIVAEVAREWGVTDVDGNQPPSIRSLQFLLPNYVLKDLFASAPYLQPF---VPDIKLP 141
            MAVELK   VAS S+WPG+V TE   R A    +      +  ++ EGY  E+P   GRA+AAL              + S++M R+G +QIVAE+A+ +G+ D DGN+P S+RSL+FLLP           P L+ +   VPDIK+P
Sbjct:  185 MAVELKPHNVASLSIWPGIVGTEFITRFAAEMDDSSGADSQSSAIREGYNWETPLLTGRAIAAL-------------AADSTVMRRTGRVQIVAELAQHYGLVDKDGNRPVSLRSLRFLLP--------LGLPTLRQYPWLVPDIKVP 311          
The following BLAST results are available for this feature:
BLAST of EWM23240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104193|gb|EWM23240.1|6.225e-103100.00short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|553193064|ref|XP_005855702.1|7.170e-7683.44short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|299470910|emb|CBN79894.1|3.442e-2338.10Short-chain dehydrogenase/reductase [Ectocarpus si... [more]
gi|551597753|ref|XP_005780959.1|1.686e-2241.03short-chain dehydrogenase/reductase [Emiliania hux... [more]
gi|676383491|ref|XP_009035024.1|3.734e-2238.99hypothetical protein AURANDRAFT_23211 [Aureococcus... [more]
gi|738025943|ref|WP_035984861.1|1.909e-2142.95short-chain dehydrogenase [Leptolyngbya sp. KIOST-... [more]
gi|219118606|ref|XP_002180072.1|2.966e-2139.33predicted protein, partial [Phaeodactylum tricornu... [more]
gi|518321219|ref|WP_019491426.1|3.201e-2040.25short-chain dehydrogenase [Calothrix sp. PCC 7103][more]
gi|504963532|ref|WP_015150634.1|8.166e-2041.45dehydrogenase [Oscillatoria acuminata] >gi|4280031... [more]
gi|504995138|ref|WP_015182240.1|8.648e-2041.22dehydrogenase [Microcoleus sp. PCC 7113] >gi|42825... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7451rna7451Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications