rna7450, rna7450 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7450
Unique Name	rna7450
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1787
Alignment location	CM002471.1:620520..621550 +

Link to JBrowse

Properties


Property Name	Value
Product	short-chain dehydrogenase reductase sdr
Orig transcript id	gnl\|cribi\|Naga_101243g1.8588.mrna
Orig protein id	gnl\|cribi\|Naga_101243g1.8588
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:620520..621550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101243g1	gene7208	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7450	rna7450-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23241.1	cds7432	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:620520..621550+
coding sequence from alignment at CM002471.1:620520..621550+

mRNA sequence

>rna7450 ID=rna7450|Name=rna7450|organism=Nannochloropsis gaditana|type=mRNA|length=1787bp
ATGCTTACTTCCTGGCCCCTCCTTCCTCTACCGTCCTTCGCCCTCCTCTT
ATCCCCCCCGCCCCCCTTCTTTCCCTCGCGCAGGCCCTCCTCCCCCTCCT
CCTCCTCCCCCTCCTCCTCCACCTCTGGCCTCTCCGAGACCACACTCGCT
GCCCCTCAGACCCACAGGGGAAGGAGAAGAAGCGGCGACGGAGGCAGGGG
GAGGAGGAGGAGGGAAGGAAAGAGGAACGGAAGGTGGAAACCGTCCTCCC
TTCCCCTCCTCGCCCGAGCCTTCCTGGGCGCTGCAAGTAAGCCCTCCTTC
CCTCCCTCCCTCTCTCACTCCCTCTCTTCCGCCCTCCCTCCCTCCATTCC
TTCCACCCGCTCTCCCTACCCATCCCTCCTTTTCCTTCCCCCCCTCCCCA
TAGTCATTCTCACATCCGCCATCTCTCACCGACCTCGTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTTCTCCC
TCCCCCTCTCCCTCCCTCGACAGGCATCCTCTTCTTTCCCCTCCTTGCCT
TCCTTGCCACCATATTTGTGGTTTCGCGCCAATTTCTCAACCGAGAAAAA
GATGACCTCTCCCTTTACGAGGACACCACCTCCGCGCTCTTCCCTCCCTC
CCTCCCCCCTTCCCGCCCTCCTTCCCTCCCTCCTTCCACCCCGTGCTCCT
ACCGGTCCATCACCTCCACCTACCGACATCCCTGTGCCCCGTCCTCCTTC
GCATCCTCCCTCCCGCCCTACCCTCCTTCCTCCTTTTGTTCCCCCCGTTC
CTCGCGGTGCGTCTCTCCCATGCCCCAAAGCCCTCCTTCCGCTGCCGGAG
GGCGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGACGGCCTCGAAGA
ATCAACGGGAGAAAAGTGATATGGAAAGAGCCGTCTCCAGCCAAAGCTCT
GGTCATGGAGAGGGATTGAAAGAGAGGGGAGGGAGGAGGAGGGGAAGGAG
GGCTGTACAGAGATAGGGCGGGGGGTGGATGGTGATGTGTGGTTGATGTG
ACGGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACATTTCTTT
GTGTGTATGTGTGCGCCGTGCCAGACAATGTGAGAGGAAAAGAGATGGAG
GGAAAGAGGGCGGGAGGGAGATAGAAAGTGAGGAGGGAGGGAGAGAGGGG
GACGGAGAGAAAGCGTATGTGTGCCTACCACCTGTAAAAATTGACCGGGA
AAGGCAATTTAAGGGGAAAAAAGGCATAAACAGACCCCAAACCCTCTCGG
ATTGGTTGGGAAGGGCGAGCAGGGGAGGGAAGGAAAGGGGAAGGAGGAGG
ACGGGCGCGAGGAAGGAAAAAGAGGGCAAGAAAGACAAACCCGCGAACAA
AGTTAAGGTACCTAAAGAGGGCAAGAGAGAGAGGCCCCGTGCCCTCTGGC
CTGTCCGACCCCACCTACGGATCCTCCGGATGTGATGGATCTGGAAGGAG
GGTGGAGAGGCCGCGAACAAAGTTAAGGTACCTCCTCTGGCAGACAGCCA
CCCCCAAAAAATGACAGGCATGTGAACGAATCGCCTTGGTGATGTTGCCA
CCACCCATTTCGAGAGGCCCATGAAGGGGGGGAAAATAAAAGCCCGAGCT
TGAATGAAACGGCTCCGACGCGCCCCTTTCAACGCGTGCATGTCTCTCTT
ATGAAGCGTATATTTCCGGGCGGGGAATTCATTGTCCTCGTCCCTGTCAG
ACAACACACACACATTGGGCCCTAATTACACTTTGTC

protein sequence of rna7450

>rna7450-protein ID=rna7450-protein|Name=rna7450|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MHEDTKKAWRALNIGQGGATDAPTMLRRISFFSPSPYCYTLFLLSFFSHA
LAFSFLHMSSSPLQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATAR
SYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAV
DPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEVRG
RE

mRNA from alignment at CM002471.1:620520..621550+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7450 ID=rna7450|Name=rna7450|organism=Nannochloropsis gaditana|type=mRNA|length=1031bp|location=Sequence derived from alignment at CM002471.1:620520..621550+ (Nannochloropsis gaditana)
CAATACAGAGTAGCATTGATGAATGCATGAGGATACTAAAAAAGCCTGGA
GAGCGTTAAACATTGGACAAGGAGGCGCGACTGACGCACCAACGATGCTT
CGTCGgatctccttcttttctccctccccctatTGCTACACGTTATTCct
cttgtcttttttttcgcaCGCTTTGGCgttctcctttcttcatATGTCAT
CATCTCCTCTTCAGCCGCTACAAGGAAAAGTTGCCCTCGTCACTGGGGCC
TCGCGTGGAATAGGAAGAGGCATCGCGTTTGAACTCGCCGTGGCAGGCGC
GTAATACTTCCATTTCAGGACTTTTTTTctgctcttctttctctgtcATT
CCCATGCACCGGGTCCTACTAAAATATCAAACATTTCACTTGTACGTACA
GGCGCGACAGTCTACGCAACGGCCCGGTCGTATGGAGAAAAGGAATGCAC
GGAAGGTATTTTGCGAAGGGCCTGAGACGGAGGCCGCATTCGGGGCCGGG
GCCTTGGACTGCCTGATATTCCTGTTGCAATGATTCCTTCTTATGgcatc
ttttctttccacGCACTTCGTCTTCCTTGATCGTTGAAAACATCACCCTc
tggacccccccccttctcctgtcCTGTCCCGTCCCCGACtctcctctctg
tctccACTGACTCCGTTTCCTTACGTCATGCGCCTTCTCGAAAGAGAAAT
TACATCCACGCTGCCTATCGCCCGActctctctcccgtcccTGTTGACCC
AGCCACACTAGGCGGCACACTGACGACCCTGGCAGAGGACGTCATGGAGG
CCCTCATCGACAtccctgggggagggaaggcggcgaaTGGGCGGGTGATT
CCCCTCCGCTGCGACCACGCCGTCGACCCTCAGATCTACAGCGTCCTTGA
CACGGTTCGCCGGGACGAAGGCCGCCTGGATTTTTTGGTGAACAATGCGT
TtgccattcctccttcgggGGTGGCCGGCATGGTGGGGAAACCCTTCTGG
GAACAAGGGGCGGaggtgcgagggagggagg

Coding sequence (CDS) from alignment at CM002471.1:620520..621550+

>rna7450 ID=rna7450|Name=rna7450|organism=Nannochloropsis gaditana|type=CDS|length=1821bp|location=Sequence derived from alignment at CM002471.1:620520..621550+ (Nannochloropsis gaditana)
ATGCATGAGGATACTAAAAAAGCCTGGAGAGCGTTAAACATTGGACAAGG
AGGCGCGACTGACGCACCAACGATGCTTCGTCGgatctccttcttttctc
cctccccctatTGCTACACGTTATTCctcttgtcttttttttcgcaCGCT
TTGGCgttctcctttcttcatATGTCATCATCTCCTCTTCAGCCGCTACA
AGGAAAAGTTGCCCTCGTCACTGGGGCCTCGCGTGGAATAGGAAGAGGCA
TCGCGTTTGAACTCGCCGTGGCAGGCGCGACAGTCTACGCAACGGCCCGG
TCGTATGGAGAAAAGGAATGCACGGAAGCCACACTAGGCGGCACACTGAC
GACCCTGGCAGAGGACGTCATGGAGGCCCTCATCGACAtccctgggggag
ggaaggcggcgaaTGGGCGGGTGATTCCCCTCCGCTGCGACCACGCCGTC
GACCCTCAGATCTACAGCGTCCTTGACACGGTTCGCCGGGACGAAGGCCG
CCTGGATTTTTTGGTGAACAATGCGTTtgccattcctccttcgggGGTGG
CCGGCATGGTGGGGAAACCCTTCTGGGAACAAGGGGCGGaggtgcgaggg
agggaggATGCATGAGGATACTAAAAAAGCCTGGAGAGCGTTAAACATTG
GACAAGGAGGCGCGACTGACGCACCAACGATGCTTCGTCGgatctccttc
ttttctccctccccctatTGCTACACGTTATTCctcttgtcttttttttc
gcaCGCTTTGGCgttctcctttcttcatATGTCATCATCTCCTCTTCAGC
CGCTACAAGGAAAAGTTGCCCTCGTCACTGGGGCCTCGCGTGGAATAGGA
AGAGGCATCGCGTTTGAACTCGCCGTGGCAGGCGCGACAGTCTACGCAAC
GGCCCGGTCGTATGGAGAAAAGGAATGCACGGAAGCCACACTAGGCGGCA
CACTGACGACCCTGGCAGAGGACGTCATGGAGGCCCTCATCGACAtccct
gggggagggaaggcggcgaaTGGGCGGGTGATTCCCCTCCGCTGCGACCA
CGCCGTCGACCCTCAGATCTACAGCGTCCTTGACACGGTTCGCCGGGACG
AAGGCCGCCTGGATTTTTTGGTGAACAATGCGTTtgccattcctccttcg
ggGGTGGCCGGCATGGTGGGGAAACCCTTCTGGGAACAAGGGGCGGaggt
gcgagggagggaggATGCATGAGGATACTAAAAAAGCCTGGAGAGCGTTA
AACATTGGACAAGGAGGCGCGACTGACGCACCAACGATGCTTCGTCGgat
ctccttcttttctccctccccctatTGCTACACGTTATTCctcttgtctt
ttttttcgcaCGCTTTGGCgttctcctttcttcatATGTCATCATCTCCT
CTTCAGCCGCTACAAGGAAAAGTTGCCCTCGTCACTGGGGCCTCGCGTGG
AATAGGAAGAGGCATCGCGTTTGAACTCGCCGTGGCAGGCGCGACAGTCT
ACGCAACGGCCCGGTCGTATGGAGAAAAGGAATGCACGGAAGCCACACTA
GGCGGCACACTGACGACCCTGGCAGAGGACGTCATGGAGGCCCTCATCGA
CAtccctgggggagggaaggcggcgaaTGGGCGGGTGATTCCCCTCCGCT
GCGACCACGCCGTCGACCCTCAGATCTACAGCGTCCTTGACACGGTTCGC
CGGGACGAAGGCCGCCTGGATTTTTTGGTGAACAATGCGTTtgccattcc
tccttcgggGGTGGCCGGCATGGTGGGGAAACCCTTCTGGGAACAAGGGG
CGGaggtgcgagggagggagg

Synonyms

Publications