EWM23241.1, cds7432 (CDS) Nannochloropsis gaditana

Overview
NameEWM23241.1
Unique Namecds7432
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:620542..620815 +
Alignment locationCM002471.1:620921..620974 +
Alignment locationCM002471.1:621272..621550 +

Link to JBrowse

Properties
Property NameValue
End range.
End range621550
Protein idEWM23241.1
Productshort-chain dehydrogenase reductase sdr
Partialtrue
Orig transcript idgnl|cribi|Naga_101243g1.8588.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:620542..620815 +
CM002471.1supercontigCM002471.1:620921..620974 +
CM002471.1supercontigCM002471.1:621272..621550 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002198DH_sc/Rdtase_SDR
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|585104196|gb|EWM23241.1| (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana])

HSP 1 Score: 416.001 bits (1068), Expect = 4.252e-147
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MHEDTKKAWRALNIGQGGATDAPTMLRRISFFSPSPYCYTLFLLSFFSHALAFSFLHMSSSPLQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEVRGRE 202
            MHEDTKKAWRALNIGQGGATDAPTMLRRISFFSPSPYCYTLFLLSFFSHALAFSFLHMSSSPLQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEVRGRE
Sbjct:    1 MHEDTKKAWRALNIGQGGATDAPTMLRRISFFSPSPYCYTLFLLSFFSHALAFSFLHMSSSPLQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEVRGRE 202          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|1127359712|gb|APR81115.1| (3-oxoacyl-[acyl-carrier protein] reductase [Minicystis rosea])

HSP 1 Score: 107.842 bits (268), Expect = 6.960e-25
Identity = 63/136 (46.32%), Postives = 80/136 (58.82%), Query Frame = 0
Query:   63 LQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGG-KAANGRVIPLRCDHAVDPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAE 197
            +Q LQG++A+VTGASRG GRG+A EL  AGATVY T RS   +    A   G L   +   M   ID       AA GR IP+RCDHA   Q+ +++D V R++GRLD LVNNA+    +     +  PFWEQ  E
Sbjct:    1 MQTLQGRIAIVTGASRGAGRGVAVELGAAGATVYVTGRS--TRGAPAAGYAGFLEQASLSAMPGSIDDTADEVTAAGGRGIPVRCDHADPAQVRALVDRVEREQGRLDLLVNNAWGGHETFSLASLNAPFWEQPLE 134          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|1204968893|ref|WP_087711357.1| (short-chain dehydrogenase [Phormidium sp. HE10JO])

HSP 1 Score: 106.686 bits (265), Expect = 3.032e-24
Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 0
Query:   63 LQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRD-EGRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEV 198
            +Q LQGKVALVTGA+RG+G+GIA  L  AGATVY T RSY      +  +GGT           L+D     + A G  +P++ DH+ D Q+ S+ D +  + EG+LD LVNN FA     +A   G PFW+QG ++
Sbjct:    1 MQHLQGKVALVTGATRGLGKGIAVGLGEAGATVYITGRSYDRSNLEDREIGGT-----------LLDTQAAVEEAGGVCVPVQVDHSDDEQVRSLFDRIDNEQEGQLDLLVNNVFA-GVQAIADAYGDPFWKQGPQL 125          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|926435327|ref|WP_053762091.1| (short-chain dehydrogenase [Streptomyces sp. AS58] >gi|925525590|gb|KOV53499.1| short-chain dehydrogenase [Streptomyces sp. AS58])

HSP 1 Score: 105.916 bits (263), Expect = 3.329e-24
Identity = 62/130 (47.69%), Postives = 75/130 (57.69%), Query Frame = 0
Query:   64 QPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWE 193
            +PL GK+A+VTGASRG+G+GIA EL  AGATVY T RS         +L GT++  A+ V            A  G  I L CDH  D Q+  V + VR D GRLD LVNN F+ P  G    +GKPFWE
Sbjct:    3 RPLFGKIAVVTGASRGVGKGIALELGAAGATVYVTGRS-----VAAGSLPGTVSETADQV-----------TALGGTGIALVCDHHSDEQVAHVFERVRHDTGRLDLLVNNVFSSPDLGA--WLGKPFWE 114          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|919089596|ref|XP_013381822.1| (PREDICTED: dehydrogenase/reductase SDR family member 1-like [Lingula anatina])

HSP 1 Score: 105.916 bits (263), Expect = 5.176e-24
Identity = 60/137 (43.80%), Postives = 87/137 (63.50%), Query Frame = 0
Query:   63 LQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDE-GRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEV 198
            L PL G+VA+VTGA+RGIGRGIA +L  AGATVY T R+   K  ++ +L GT    AE++           ++  G+ IP++CDH+ D +I ++ D V+ ++ GRLD LVNNA++     V G + +PFWEQ  E+
Sbjct:    4 LTPLAGQVAVVTGATRGIGRGIALQLGEAGATVYITGRTLKSKGNSKLSLEGT----AEEI-----------ESRGGKGIPVQCDHSKDEEIKALFDRVKAEQHGRLDILVNNAYSAVER-VLGNINQPFWEQEPEI 124          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|1101394325|dbj|GAU88819.1| (hypothetical protein RvY_01448 [Ramazzottius varieornatus])

HSP 1 Score: 105.531 bits (262), Expect = 5.678e-24
Identity = 58/134 (43.28%), Postives = 78/134 (58.21%), Query Frame = 0
Query:   60 SSPLQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWE 193
            +SP +PL  KV LVTGASRG+G+GIA +L  AG TVY T R+    +       G+L   AE++            A  G+ +P++CDH+ D  I  V + +  DEGRLD LVNNA++   + V G  GKPFWE
Sbjct:    2 TSPTRPLSNKVVLVTGASRGLGKGIALQLGEAGCTVYITGRTLDPTDAPRRP--GSLRATAEEI-----------NARGGKAVPVQCDHSKDEDIARVFEMIASDEGRLDLLVNNAYSAVNALVTGF-GKPFWE 121          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|919084108|ref|XP_013379355.1| (PREDICTED: dehydrogenase/reductase SDR family member 1-like [Lingula anatina])

HSP 1 Score: 105.916 bits (263), Expect = 6.179e-24
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   63 LQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDE-GRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEV 198
            L PL G+VA+VTGA+RGIGRGIA +L  AGATVY T R+      ++ +L GT    AE++           ++  G+ IP++CDH+ D +I ++ D VR ++ GRLD LVNNA++     V G + +PFWEQ  E+
Sbjct:    4 LTPLAGQVAIVTGATRGIGRGIALQLGEAGATVYITGRTLKSNGNSKLSLEGT----AEEI-----------ESRGGKGIPVQCDHSKDEEIKALFDRVRAEQHGRLDILVNNAYS-AVERVLGNINQPFWEQEPEI 124          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|1057444744|ref|WP_068790470.1| (short-chain dehydrogenase [Phormidium willei] >gi|1025907162|gb|OAB56051.1| short-chain dehydrogenase [Phormidium willei BDU 130791])

HSP 1 Score: 105.531 bits (262), Expect = 1.035e-23
Identity = 60/137 (43.80%), Postives = 80/137 (58.39%), Query Frame = 0
Query:   63 LQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRD-EGRLDFLVNNAFAIPPSGVAGMVGKPFWEQGAEV 198
            +Q LQGKVALVTGA+RG+G+GIA  L  AGATVY T RSY      +  +GGT           L+D     + A G  +P++ DH  D Q+ S+ D +  + EG+LD LVNN FA     +A   G PFW+QG ++
Sbjct:    1 MQHLQGKVALVTGATRGLGKGIAVGLGEAGATVYITGRSYDRSNLEDREIGGT-----------LLDTQAAVEEAGGVCVPVQVDHNDDEQVRSLFDRIDNEQEGQLDLLVNNVFA-GVQAIAEAYGDPFWKQGPQL 125          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|1205886984|gb|OWF37972.1| (Dehydrogenase/reductase SDR family member 1 [Mizuhopecten yessoensis])

HSP 1 Score: 103.605 bits (257), Expect = 1.252e-23
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 0
Query:   44 LSFFSHALAFSFLHMSSSPLQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTEATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRD-EGRLDFLVNNAFAIPPSGVAGMVGKPFWEQ 194
            L+ F H      L M+SS  + L GKV +VTGA+RGIG+GIA +L  AGATVY T R+    +  ++ +GG+LT  A ++ E             G+ IP++CDH  D +I  + D V+R+ EG+LD LVNNAF      +   +  PFWEQ
Sbjct:    5 LAHFPH-----ILEMASSG-RKLAGKVCIVTGATRGIGKGIALQLGEAGATVYITGRTLVAAK--DSKVGGSLTDTAREIEE-----------RGGKCIPVQCDHTKDEEIQQLFDKVKREQEGQLDILVNNAFN-AAKAIFDQMKVPFWEQ 136          
BLAST of EWM23241.1 vs. NCBI_GenBank
Match: gi|1054210124|ref|WP_066188164.1| (oxidoreductase [Gracilibacillus timonensis])

HSP 1 Score: 103.219 bits (256), Expect = 2.623e-23
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 0
Query:   63 LQPLQGKVALVTGASRGIGRGIAFELAVAGATVYATARSYGEKECTE--ATLGGTLTTLAEDVMEALIDIPGGGKAANGRVIPLRCDHAVDPQIYSVLDTVRRDEGRLDFLVNNAFAIPPSGVAGMVGKPFWE 193
            ++PL+GK+ALVTGASRG GRGIA ELA AGATVY T RS   K       T+  T + +  D          GG A     I +RCDH  D +  +V+D +R+++G+LD LVNN +     GV     KPFW+
Sbjct:    1 MKPLEGKIALVTGASRGAGRGIAIELAQAGATVYLTGRSTKHKSINNWPGTIDDTASKITSD----------GGNA-----IAVRCDHTKDVETEAVIDKIRQEQGKLDILVNNVWGAHDLGVE---AKPFWQ 115          
The following BLAST results are available for this feature:
BLAST of EWM23241.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104196|gb|EWM23241.1|4.252e-147100.00short-chain dehydrogenase reductase sdr, partial [... [more]
gi|1127359712|gb|APR81115.1|6.960e-2546.323-oxoacyl-[acyl-carrier protein] reductase [Minicy... [more]
gi|1204968893|ref|WP_087711357.1|3.032e-2443.80short-chain dehydrogenase [Phormidium sp. HE10JO][more]
gi|926435327|ref|WP_053762091.1|3.329e-2447.69short-chain dehydrogenase [Streptomyces sp. AS58] ... [more]
gi|919089596|ref|XP_013381822.1|5.176e-2443.80PREDICTED: dehydrogenase/reductase SDR family memb... [more]
gi|1101394325|dbj|GAU88819.1|5.678e-2443.28hypothetical protein RvY_01448 [Ramazzottius varie... [more]
gi|919084108|ref|XP_013379355.1|6.179e-2443.80PREDICTED: dehydrogenase/reductase SDR family memb... [more]
gi|1057444744|ref|WP_068790470.1|1.035e-2343.80short-chain dehydrogenase [Phormidium willei] >gi|... [more]
gi|1205886984|gb|OWF37972.1|1.252e-2341.45Dehydrogenase/reductase SDR family member 1 [Mizuh... [more]
gi|1054210124|ref|WP_066188164.1|2.623e-2344.36oxidoreductase [Gracilibacillus timonensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7450rna7450Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications