rna7448, rna7448 (mRNA) Nannochloropsis gaditana

Overview
Namerna7448
Unique Namerna7448
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length893
Alignment locationCM002471.1:615433..616109 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101425g1.9071.mrna
Orig protein idgnl|cribi|Naga_101425g1.9071
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:615433..616109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101425g1gene7206Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7448rna7448-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23243.1cds7430Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7448 ID=rna7448|Name=rna7448|organism=Nannochloropsis gaditana|type=mRNA|length=893bp
GGAGAGAGGAGGGGCGCAAACTCAAAATGCCGTCCACAGTATGTCCTTAG
ACGGAAGAAATGCGTCATCGTTGGCTTCTCTGTCTGGCTTTCCAACACCA
GGGCAGTGGAACCCGCATGCGGGGGACAAGGGCGTCCTTTGGGTGATTTG
GACCTGTGTTTTGCGACAGATCACATGCGGCAGGCAGCTCACGCAAGTTT
CGTTTCCGGCACCTCCCTTACGTGCACTCTGACCACCTTTCAGACCATTG
TTCCAGCTCATGGATATACCAGCAGCACCGGCGCCACAACCACCACCCAT
GCACGTGGTGGAGGAGCACGGCGGGGGAATGGAAGGGGGGCGAGCAGGGG
GGAACACAACGGCTGCCAAGCTCTTGTACAAAGCCATACAGGAAAACGAC
CTGGAGACGATCAAGCGGCTAGTGGAGGGCAAGGTATGTGACAGTTATAA
AGAAGAGAGCGCAAAATATTGGGCGGGCAAGCGGATTGTTGGAAGGGTGC
GGAAATGCCCAGAGGAAAGAGAGGAAAATGATAGCATGTGGGCGCCTCTT
TGGACATTGTCGTCTTCCTCCCTCTCGTTCTCTCTCTTTCTTGCCCCGTC
TTCTTTTCTCTTGCTTCCCCCTTCCTTCCTGGTTTCTTTCTTCTTTCTCT
TTCTTTCTTCCCCCCTCTTTTCTCTTCTCCCCTTCTTTTGCCCACGGCAT
GACTTAACCCCCGATGGATTAAACATCGACCTACTGTGGCATCTCCCTCA
CCTTCGCCTCAATTATTTGCCTCTTCCCCCTGCCACGTCACCGCCTGTGA
CCATAGGACGTGCAGCATTTGCGGTGGATGATGCTGCAGCGGAATTACGA
CATGGACGAGGTAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGG
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protein sequence of rna7448

>rna7448-protein ID=rna7448-protein|Name=rna7448|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MGSRGVMDSASRNDGLNGAPPSQRGGIWKGEVVETPLLYACDVLMAIWKK
NALYCWEGGREGGRMPEVENQKYCLKSSQSTIRMSFSLCPPSLPPPSLLC
GQEGGREGGREGGWKRRGGRRKEGQSVIRAQCVCVV
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mRNA from alignment at CM002471.1:615433..616109+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7448 ID=rna7448|Name=rna7448|organism=Nannochloropsis gaditana|type=mRNA|length=677bp|location=Sequence derived from alignment at CM002471.1:615433..616109+ (Nannochloropsis gaditana)
ATGGGATCCAGAGGAGTGATGGACTCGGCGtcagtcctccctccctccct
ccctccctccctccctccctccctccctcccttcccggtcCCATGGGATT
CAGAGGAATGATGGACTCAacggcgcccctccctcccagaggGTCCATTC
CCAggcggagggacggagggagggagggagggagggagggagggagggag
gggaggacgacaggaTGTACAAAATGACACTATTAGGGGGGGATATGGAA
GGGTGAGGTTGTAGAGACGCCTCTGTTGTATGCGTGCGATGTTTTAATGG
CTATTTGGAAGAAAAATGCACTGTATTGCGTTCGAGAAAGTGAAGAGAAA
TTAAAATTTTGCGATCCTgcagtgggagggagggagggagggaggaagga
tgccTGAGGTGGAGAACCAAAAGTACTGCTTAAAATCCAGCCAATCGACC
ATTCGCATGAGTTtctccctttgtcctccctcccttcctcccccctccct
cctgtgtgggcaagagggagggagggagggagggagggaggggggatggt
aCATGTAGACGAGCATGCGTGTGACCGCACCGGCTAAACTTCAACgtaag
ggaaaaggaaaaggagggggggaagacgcaAGGAGGGACAAAGTGTAATT
AGGGCCCAATGTGTGTGTGTTGTCTGA
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Coding sequence (CDS) from alignment at CM002471.1:615433..616109+

>rna7448 ID=rna7448|Name=rna7448|organism=Nannochloropsis gaditana|type=CDS|length=2055bp|location=Sequence derived from alignment at CM002471.1:615433..616109+ (Nannochloropsis gaditana)
ATGGGATCCAGAGGAGTGATGGACTCGGCGtcaAGGAATGATGGACTCAa
cggcgcccctccctcccagaggGGGGGGATATGGAAGGGTGAGGTTGTAG
AGACGCCTCTGTTGTATGCGTGCGATGTTTTAATGGCTATTTGGAAGAAA
AATGCACTGTATTGCtgggagggagggagggagggaggaaggatgccTGA
GGTGGAGAACCAAAAGTACTGCTTAAAATCCAGCCAATCGACCATTCGCA
TGAGTTtctccctttgtcctccctcccttcctcccccctccctcctgtgt
gggcaagagggagggagggagggagggagggaggggggatggaaaaggag
ggggggaagacgcaAGGAGGGACAAAGTGTAATTAGGGCCCAATGTGTGT
GTGTTGTCTGAATGGGATCCAGAGGAGTGATGGACTCGGCGtcaAGGAAT
GATGGACTCAacggcgcccctccctcccagaggGGGGGGATATGGAAGGG
TGAGGTTGTAGAGACGCCTCTGTTGTATGCGTGCGATGTTTTAATGGCTA
TTTGGAAGAAAAATGCACTGTATTGCtgggagggagggagggagggagga
aggatgccTGAGGTGGAGAACCAAAAGTACTGCTTAAAATCCAGCCAATC
GACCATTCGCATGAGTTtctccctttgtcctccctcccttcctcccccct
ccctcctgtgtgggcaagagggagggagggagggagggagggagggggga
tggaaaaggagggggggaagacgcaAGGAGGGACAAAGTGTAATTAGGGC
CCAATGTGTGTGTGTTGTCTGAATGGGATCCAGAGGAGTGATGGACTCGG
CGtcaAGGAATGATGGACTCAacggcgcccctccctcccagaggGGGGGG
ATATGGAAGGGTGAGGTTGTAGAGACGCCTCTGTTGTATGCGTGCGATGT
TTTAATGGCTATTTGGAAGAAAAATGCACTGTATTGCtgggagggaggga
gggagggaggaaggatgccTGAGGTGGAGAACCAAAAGTACTGCTTAAAA
TCCAGCCAATCGACCATTCGCATGAGTTtctccctttgtcctccctccct
tcctcccccctccctcctgtgtgggcaagagggagggagggagggaggga
gggaggggggatggaaaaggagggggggaagacgcaAGGAGGGACAAAGT
GTAATTAGGGCCCAATGTGTGTGTGTTGTCTGAATGGGATCCAGAGGAGT
GATGGACTCGGCGtcaAGGAATGATGGACTCAacggcgcccctccctccc
agaggGGGGGGATATGGAAGGGTGAGGTTGTAGAGACGCCTCTGTTGTAT
GCGTGCGATGTTTTAATGGCTATTTGGAAGAAAAATGCACTGTATTGCtg
ggagggagggagggagggaggaaggatgccTGAGGTGGAGAACCAAAAGT
ACTGCTTAAAATCCAGCCAATCGACCATTCGCATGAGTTtctccctttgt
cctccctcccttcctcccccctccctcctgtgtgggcaagagggagggag
ggagggagggagggaggggggatggaaaaggagggggggaagacgcaAGG
AGGGACAAAGTGTAATTAGGGCCCAATGTGTGTGTGTTGTCTGAATGGGA
TCCAGAGGAGTGATGGACTCGGCGtcaAGGAATGATGGACTCAacggcgc
ccctccctcccagaggGGGGGGATATGGAAGGGTGAGGTTGTAGAGACGC
CTCTGTTGTATGCGTGCGATGTTTTAATGGCTATTTGGAAGAAAAATGCA
CTGTATTGCtgggagggagggagggagggaggaaggatgccTGAGGTGGA
GAACCAAAAGTACTGCTTAAAATCCAGCCAATCGACCATTCGCATGAGTT
tctccctttgtcctccctcccttcctcccccctccctcctgtgtgggcaa
gagggagggagggagggagggagggaggggggatggaaaaggaggggggg
aagacgcaAGGAGGGACAAAGTGTAATTAGGGCCCAATGTGTGTGTGTTG
TCTGA
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Synonyms
Publications