rna7447, rna7447 (mRNA) Nannochloropsis gaditana

Overview
Namerna7447
Unique Namerna7447
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1288
Alignment locationCM002471.1:614388..615280 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101374g1.802.mrna
Orig protein idgnl|cribi|Naga_101374g1.802
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:614388..615280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101374g1gene7205Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7447rna7447-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23244.1cds7429Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7447 ID=rna7447|Name=rna7447|organism=Nannochloropsis gaditana|type=mRNA|length=1288bp
ATGGGTAGAGAAGGAGAGGTCTTTCCCACCGCACCGCACCCTCTCATAAG
CATGAAAGAAGCTGATAAGATCAAAACGATCGTAGTACAAGGCGTCATCG
TGGTGCTTGCGGCCTTATGTCTTTTCTGGACGGTGAATTACGCGTCCGCG
CAGGTTTCCCTGGAAGAAAAAGGTAATTCCCAATTACGGACGAGCGACAT
CAGTCCCTTCAAGATGGCCATGGAGGGTAGTGAAGGATTCTTCGACGATA
TTCGAGATGCAGGATGGAAACGGCTCATGGAACGAATTCAGACCACTCCT
TCATGTGCAGCATCTTGCGCGGCCGAGCCGGCAGCACGCTGGTATCAAAA
CAACTGGGAGCCGAATTTCACGTGTCTTGACGAGCGCCGCATCGGCCGTT
GGGGGGATGGTGGTAAGTGGGTATGCGATCCACGTCGCATCGTTGCGAAG
GCGGAGGCTGGGCATGGTTGCCTTGTGTACAGTGTGGGCTCCAACAACGA
CTTCAGCTTCGAGGAGAGTATCTTGCGCGATATCTCCCCTGCGTGTGAAA
TTCATACTTTCGACCCGACCATCGGGGACCGTCCCGCCAAGCCGCTGACG
GATGAACAGATCACCTTTCACCCCTGGGGTCTCTCCAACAAAAACGACGG
GAAGTACAAGACTCTGCAGACCATCATGCAGGACCTGGACCATGGGAACA
GAGAGATCGACATCCTCAAGATCGATTGCGAGGGCTGCGAATGGTCCAGC
TACGAGAGCTGGCTCGACAAAGGGATTCGCATTCGCCAGATATTGATTGA
GTTGCATCAGGGTACTGAGGGGGCGACTCCGGTCCCAGCCATGAAATTCA
TGGAATCTCTGTCGCAGCGAGGGTTTGTGATCTTCCACAAAGAGCCCAAT
ACTCTAGGGTGCGGAGGAAGATGTATAGAATACGCGTTTGTGAAACTTGC
GAGTCCCGAGGTACGCCTTGCAGGAATTGTGAACAACACCAGGAGTAGGA
CTTAACTCAGTGAATGATAATCGTAGAATGCGGCAGTCATTTTTCATCGC
CCTGATCCATTGCGTCCCAAGGGCAGGAAGGGGGCAAGGCGGGAAAGTGA
AAGAGATGAAGGGAGAGAGGCAGAGGAGGGGAAGTTTACAATGCTGTCAA
AGACTGTCAATATGGGGAAATCGCGGCCAAGGAACTTGGCACGTGGGAGG
AACCAAGAAAGGGAAGGAAGGAAGGTAGGAAGGAGGGAAGGAGGAAGGGA
GGGAGGGGTGGTGGAAATGGGGGCAGAAAAATGACAGG
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protein sequence of rna7447

>rna7447-protein ID=rna7447-protein|Name=rna7447|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MDIPAAPAPQPPPMHVVEEHGGGMEGGRAGGNTTAAKLLYKAIQENDLET
IKRLVEGKVCDSYKEESAKYWAGKRIVGRVRKCPEEREENDSMWAPLWTL
SSSSLSFSLFLAPSSFLLLPPSFLVSFFFLFLSSPLFSLLPFFCPRHDLT
PDGLNIDLLWHLPHLRLNYLPLPPATSPPVTIGRAAFAVDDAAAELRHGR
GREGGREEGRE
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mRNA from alignment at CM002471.1:614388..615280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7447 ID=rna7447|Name=rna7447|organism=Nannochloropsis gaditana|type=mRNA|length=893bp|location=Sequence derived from alignment at CM002471.1:614388..615280+ (Nannochloropsis gaditana)
ggagagaggaggggcgcaaACTCAAAATGCCGTCCACAGTATGTCCTTAG
ACGGAAGAAATGCGTCATCGTTGGCTTCTCTGTCTGGCTTTCCAACACCA
GGGCAGTGGAACCCGCATGCGGGGGACAAGGGCGTCCTTTGGGTGATTTG
GACCTGTGTTTTGCGACAGATCACATGCGGCAGGCAGCTCACGCAAGTTT
CGTTTCCGGCACCTCCCTTACGTGCACTCTGACCACCTTTCAGACCATTG
TTCCAGCTCATGGATATACCAGCAGCACCGGCGCCACAACCACCACCCAT
gcacgtggtggaggagcacggcgggggaatggaaggggggcgagCAGGGG
GGAACACAACGGCTGCCAAGCTCTTGTACAAAGCCATACAGGAAAACGAC
CTGGAGACGATCAAGCGGCTAGTGGAGGGCAAGGTATGTGACAGTTATAA
AGAAGAGAGCGCAAAATATTGGGCGGGCAAGCGGATTGTTGGAAGGGTGC
GGAAATGCccagaggaaagagaggaaaatgatAGCATGTGGGCGCCTCTT
TGGACAttgtcgtcttcctccctctcgttctctctctttcttgccccgtc
ttcttttctcttgcttcccccttccttcctggtttctttcttctttctct
ttctttcttcccccctcttttctcttctccccttcttttgccCACGGCAT
GACTTAACCCCCGATGGATTAAACATCGACCTACTGTGGCATCTCCCTCA
CCTTCGCCTCAATTatttgcctcttccccctgccaCGTCACCGCCTGTGA
CCATAGGACGTGCAGCATTTGCGGTGGATGATGCTGCAGCGGAATTACGA
CATGGacgaggtagggagggagggagggaggaagggagggagg
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Coding sequence (CDS) from alignment at CM002471.1:614388..615280+

>rna7447 ID=rna7447|Name=rna7447|organism=Nannochloropsis gaditana|type=CDS|length=634bp|location=Sequence derived from alignment at CM002471.1:614388..615280+ (Nannochloropsis gaditana)
ATGGATATACCAGCAGCACCGGCGCCACAACCACCACCCATgcacgtggt
ggaggagcacggcgggggaatggaaggggggcgagCAGGGGGGAACACAA
CGGCTGCCAAGCTCTTGTACAAAGCCATACAGGAAAACGACCTGGAGACG
ATCAAGCGGCTAGTGGAGGGCAAGGTATGTGACAGTTATAAAGAAGAGAG
CGCAAAATATTGGGCGGGCAAGCGGATTGTTGGAAGGGTGCGGAAATGCc
cagaggaaagagaggaaaatgatAGCATGTGGGCGCCTCTTTGGACAttg
tcgtcttcctccctctcgttctctctctttcttgccccgtcttcttttct
cttgcttcccccttccttcctggtttctttcttctttctctttctttctt
cccccctcttttctcttctccccttcttttgccCACGGCATGACTTAACC
CCCGATGGATTAAACATCGACCTACTGTGGCATCTCCCTCACCTTCGCCT
CAATTatttgcctcttccccctgccaCGTCACCGCCTGTGACCATAGGAC
GTGCAGCATTTGCGGTGGATGATGCTGCAGCGGAATTACGACATGGacga
ggtagggagggagggagggaggaagggagggagg
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Synonyms
Publications