rna7446, rna7446 (mRNA) Nannochloropsis gaditana

Overview
Namerna7446
Unique Namerna7446
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length954
Alignment locationCM002471.1:607212..608499 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101786g1.7669.mrna
Orig protein idgnl|cribi|Naga_101786g1.7669
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:607212..608499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101786g1gene7204Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7446rna7446-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23245.1cds7428Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7446 ID=rna7446|Name=rna7446|organism=Nannochloropsis gaditana|type=mRNA|length=954bp
ATGAAAGAAGCTGGTAAGATCAAAACGATCGTAGTACAAGGCGTCATCGT
GGTGCTTGCGGCCTTATGTCTTTTCTGGACGATGAATTACGCGTCCGCGC
AGGTTTCCCTGGAAAAAAAAGGTAATTCCCAATTACGGACGAGCGACATC
AGTCCCTTCAAGATGGCCATGGAGGGTAGTGAAGGATTCTTCGACGATAT
CCGAGATGCAGGATGGAAACGGCTCATGGAACGAATTCAGACCACTCCTT
CGTGTGCAGCATCTTGCGCGGCCGAGCCGGCAGCACACTGGTATCAAAAC
AACTGGGAGCCGAATTTCACGTGTCTTGACGAGCGCCGCATCGGCCGTTG
GGGGGATGGTGGTAAGTGGGTATGCGATCCACGTCGCATCGTTGCGAAGG
CGGAGGCTGGGCATGGCTGCCTTGTGTACAGTGTGGGCTCCAACAACGAC
TTCAGCTTCGAGGAGAGTATCTTGCGCGATATCTCCCCTGCGTGTGAAAT
TCATACTTTCGACCCGACCATCGGGGACCGTCCCGCCAAGCCGCTGACGG
ATGAACAGATCACCTTTCACCCCTGGGGTCTCTCCAACAAAAACGACGGG
AAGTACAAGACTCTGCAGACCATCATGCAGGACCTGGACCATGGGAACAG
AGAGATCGACATCCTCAAGATCGATTGCGAGGGCTGCGAATGGTCCAGCT
ACGAGAGCTGGCTCGACAAAGGGATTCGCATTCGCCAGATATTGATTGAA
TTGCATCAGGGTACTGAGGGGGCGACTCCGGTCCCAGCCATGAAATTCAT
GGAATCTCTGTCGCAGCGAGGGTTTGTGATCTTCCACAAAGAGCCCAATA
TTCAATGGGCCGGAGGCGCATGTATAGAATACGCGTTTGTGAGGCTTGCG
AGTCCCGAGGCACGCCTTGCAGGAATTGTGAACAACACCAGGAGTAGGAC
TTAA
back to top

protein sequence of rna7446

>rna7446-protein ID=rna7446-protein|Name=rna7446|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MGREGEVFPTAPHPLISMKEADKIKTIVVQGVIVVLAALCLFWTVNYASA
QVSLEEKGNSQLRTSDISPFKMAMEGSEGFFDDIRDAGWKRLMERIQTTP
SCAASCAAEPAARWYQNNWEPNFTCLDERRIGRWGDGGKWVCDPRRIVAK
AEAGHGCLVYSVGSNNDFSFEESILRDISPACEIHTFDPTIGDRPAKPLT
DEQITFHPWGLSNKNDGKYKTLQTIMQDLDHGNREIDILKIDCEGCEWSS
YESWLDKGIRIRQILIELHQGTEGATPVPAMKFMESLSQRGFVIFHKEPN
TLGCGGRCIEYAFVKLASPEVRLAGIVNNTRSRT
back to top

mRNA from alignment at CM002471.1:607212..608499+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7446 ID=rna7446|Name=rna7446|organism=Nannochloropsis gaditana|type=mRNA|length=1288bp|location=Sequence derived from alignment at CM002471.1:607212..608499+ (Nannochloropsis gaditana)
ATGGGTAGAGAAGGAGAGGTCTTTCCCACCGCACCGCACCCTCTCATAAG
CATGAAAGAAGCTGATAAGATCAAAACGATCGTAGTACAAGGCGTCATCG
TGGTGCTTGCGGCCTTATGTCTTTTCTGGACGGTGAATTACGCGTCCGCG
CAGGTTTCCCTGGAAGAAAAAGGTAATTCCCAATTACGGACGAGCGACAT
CAGTCCCTTCAAGATGGCCATGGAGGGTAGTGAAGGATTCTTCGACGATA
TTCGAGATGCAGGATGGAAACGGCTCATGGAACGAATTCAGACCACTCCT
TCATGTGCAGCATCTTGCGCGGCCGAGCCGGCAGCACGCTGGTATCAAAA
CAACTGGGAGCCGAATTTCACGTGTCTTGACGAGCGCCGCATCGGCCGTT
GGGGGGATGGTGGTAAGTGGGTATGCGATCCACGTCGCATCGTTGCGAAG
GCGGAGGCTGGGCATGGTTGCCTTGTGTACAGTGTGGGCTCCAACAACGA
CTTCAGCTTCGAGGAGAGTATCTTGCGCGATATCTCCCCTGCGTGTGAAA
TTCATACTTTCGACCCGACCATCGGGGACCGTCCCGCCAAGCCGCTGACG
GATGAACAGATCACCTTTCACCCCTGGGGTCTCTCCAACAAAAACGACGG
GAAGTACAAGACTCTGCAGACCATCATGCAGGACCTGGACCATGGGAACA
GAGAGATCGACATCCTCAAGATCGATTGCGAGGGCTGCGAATGGTCCAGC
TACGAGAGCTGGCTCGACAAAGGGATTCGCATTCGCCAGATATTGATTGA
GTTGCATCAGGGTACTGAGGGGGCGACTCCGGTCCCAGCCATGAAATTCA
TGGAATCTCTGTCGCAGCGAGGGTTTGTGATCTTCCACAAAGAGCCCAAT
ACTCTAGGgtgcggaggaagatgtATAGAATACGCGTTTGTGAAACTTGC
GAGTCCCGAGGTACGCCTTGCAGGAATTGTGAACAACACCAGGAGTAGGA
CTTAACTCAGTGAATGATAATCGTAGAATGCGGCAGTCATTTTTCATCGC
CCTGATCCATTGCGTCccaagggcaggaagggggcaaggcgggaaagtga
aagagatgaagggagagaggcagaggaggggaagttTACAATGCTGTCAA
AGACTGTCAATATGGGGAAATCGCGGCCAAGGAACTTGGCACGTGGGAGG
Aaccaagaaagggaaggaaggaaggtaggaaggagggaaggaggaaggga
gggaggggtggtggaaaTGGGGGCAGAAAAatgacagg
back to top

Coding sequence (CDS) from alignment at CM002471.1:607212..608499+

>rna7446 ID=rna7446|Name=rna7446|organism=Nannochloropsis gaditana|type=CDS|length=1005bp|location=Sequence derived from alignment at CM002471.1:607212..608499+ (Nannochloropsis gaditana)
ATGGGTAGAGAAGGAGAGGTCTTTCCCACCGCACCGCACCCTCTCATAAG
CATGAAAGAAGCTGATAAGATCAAAACGATCGTAGTACAAGGCGTCATCG
TGGTGCTTGCGGCCTTATGTCTTTTCTGGACGGTGAATTACGCGTCCGCG
CAGGTTTCCCTGGAAGAAAAAGGTAATTCCCAATTACGGACGAGCGACAT
CAGTCCCTTCAAGATGGCCATGGAGGGTAGTGAAGGATTCTTCGACGATA
TTCGAGATGCAGGATGGAAACGGCTCATGGAACGAATTCAGACCACTCCT
TCATGTGCAGCATCTTGCGCGGCCGAGCCGGCAGCACGCTGGTATCAAAA
CAACTGGGAGCCGAATTTCACGTGTCTTGACGAGCGCCGCATCGGCCGTT
GGGGGGATGGTGGTAAGTGGGTATGCGATCCACGTCGCATCGTTGCGAAG
GCGGAGGCTGGGCATGGTTGCCTTGTGTACAGTGTGGGCTCCAACAACGA
CTTCAGCTTCGAGGAGAGTATCTTGCGCGATATCTCCCCTGCGTGTGAAA
TTCATACTTTCGACCCGACCATCGGGGACCGTCCCGCCAAGCCGCTGACG
GATGAACAGATCACCTTTCACCCCTGGGGTCTCTCCAACAAAAACGACGG
GAAGTACAAGACTCTGCAGACCATCATGCAGGACCTGGACCATGGGAACA
GAGAGATCGACATCCTCAAGATCGATTGCGAGGGCTGCGAATGGTCCAGC
TACGAGAGCTGGCTCGACAAAGGGATTCGCATTCGCCAGATATTGATTGA
GTTGCATCAGGGTACTGAGGGGGCGACTCCGGTCCCAGCCATGAAATTCA
TGGAATCTCTGTCGCAGCGAGGGTTTGTGATCTTCCACAAAGAGCCCAAT
ACTCTAGGgtgcggaggaagatgtATAGAATACGCGTTTGTGAAACTTGC
GAGTCCCGAGGTACGCCTTGCAGGAATTGTGAACAACACCAGGAGTAGGA
CTTAA
back to top
Synonyms
Publications