rna7443, rna7443 (mRNA) Nannochloropsis gaditana

Overview
Namerna7443
Unique Namerna7443
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length579
Alignment locationCM002471.1:597295..598415 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101341g2.9405.mrna
Orig protein idgnl|cribi|Naga_101341g2.9405
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:597295..598415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101341g2gene7201Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7443rna7443-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23248.1cds7425Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7443 ID=rna7443|Name=rna7443|organism=Nannochloropsis gaditana|type=mRNA|length=579bp
ATGCAGTTTGAAAAAAGACCCGACTTTCTGGGGGATGACAGCACTGCCAG
GAGCACCGTAGTTTGCCTTGGTCCTCCACAGCACTTTCTCCGTGAGGCTT
TGAATGCTACAGTGCTTCCTTCGCCCGCTGTACTGGCTAAAATGGGGCAT
AATGCGCCAAAAATCCCCAATCTCAGGCATGAGCCTGGTCGAGTTCAGCG
CGTTCCAGAGTGCTTGACCTCCCTGGTACTGGATTTGCACAATACATCGC
CACCCCCAGGATGCCCCACCCCAAGACCCTGCAATGCATTTCGTCCGGTT
CCTCTTTCTTGGTGCGCCCGGTGTGGGCAAAGGGACGTACGCGAACATCA
TTGGCCCCAAATTGGGCCTGGAGGTAATAACGGCCGGCGATCTGCTCAGG
CACCAAGCCCGGCTACATCCGGGTATCGCCTCGCAGTTAAAGCAGGGCGC
CCTGGTCTCCGACGAGGTGGTCCTCCCCCTCGTTCTTCAACGGATCCAGC
AATGCCAGGAAGGAGGGGGAGGAGGTTACATCTTGGACGGCTTCCCCCGC
CGACTCTCCCAGGCTCGGAGCTTGGATGA
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protein sequence of rna7443

>rna7443-protein ID=rna7443-protein|Name=rna7443|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MRWRLIFVLSSHFIVRFLLFPFLPLPFQGSCAQHERSQRNMVNESTSSTP
SSASASAAAPFLSPHQKVTASPHAQGEPPIPPHIIRGLGDRSYEKRKNAA
LDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAA
IGLMGSIEVLLYP
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mRNA from alignment at CM002471.1:597295..598415+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7443 ID=rna7443|Name=rna7443|organism=Nannochloropsis gaditana|type=mRNA|length=1121bp|location=Sequence derived from alignment at CM002471.1:597295..598415+ (Nannochloropsis gaditana)
GTCCTCAGTCTCCCTAGCCTGAAACATGCTTTTGCTTCTGCGAGCAAAGG
TGATGCCCTCGTGAGAATCGCATTGTCAAGGGGACCAGGACAATATCGAT
CGTCCctaccctcttctccatgcGGTGGCGCCTCATATTCGTCCTTTCAT
CGCATTTCATCgtccgctttctcctcttccctttcctccctttgcctttT
CAAGGGTCCTGTGCGCAGCACGAGCGGTCTCAACGCAACATGGTGAACGA
ATCGACCTCCTCAACaccatcctccgcctccgcctccgcggctgcgccct
tcctctccccccatcAGAAAGTCACCGCCTCGCCACATGCACAAGGAGAA
CCCCCCATACCACCCCACATTATCCGAGGGTGAGTCAATCCACACGActg
gggaaagaaaggggaaacaACCACGTCGCGTGGGCACGGCAAGGGACGCC
TCTAGTGTCGCACGGGCGTGGCTTTTGTGCGGGTGCTCGTGCCATGTTGT
GGCGGGGTGGCGTGGTGGTAACCGAGGCTCTATAGCCTGACCGCAGTGAC
GCGAACGCGAacgctttcctccaagaGCGATGAAGCACCGTCCTCATTTT
ggctgccttcctcccttggtcCATGctgtccttttctttccctgccgCCG
CATCTTCCGTCctcaccatcctccctccctccctccctccctccctccct
ccctcccttcctccctttcatcctGGGACGTCCAGGCTCGGTGACCGCTC
GTACGAGAAGCGCAAGAACGCCGCACTCGATCTGGAGCAGCACGTGAAAT
ACCTGACGGAGAGGAACGACAAAGtggggagagagcgagggagggaggga
gggaggggctcggAAAGTGAAAAGGTGGCTCGTTGTCCCTGGGCGATAGT
CCAACGTGCATAGATCCTAGTCAACGTTGCCGCTgacaccccctccctcc
ctccctccctccctccctccctctctccagaCCCGCCTCCAAGCCACCCT
CCATCTGCTGGGGCAAGAGTTCTGCACGTCGACGAATAGCAACCACAGGA
AAGGCGGGCTTATCGCCCTGGCAGCCGCTGCCATTGGCTTGATGGGCAGC
ATCGAGGTGCTCCTTTACCCC
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Coding sequence (CDS) from alignment at CM002471.1:597295..598415+

>rna7443 ID=rna7443|Name=rna7443|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002471.1:597295..598415+ (Nannochloropsis gaditana)
atgcGGTGGCGCCTCATATTCGTCCTTTCATCGCATTTCATCgtccgctt
tctcctcttccctttcctccctttgcctttTCAAGGGTCCTGTGCGCAGC
ACGAGCGGTCTCAACGCAACATGGTGAACGAATCGACCTCCTCAACacca
tcctccgcctccgcctccgcggctgcgcccttcctctccccccatcAGAA
AGTCACCGCCTCGCCACATGCACAAGGAGAACCCCCCATACCACCCCACA
TTATCCGAGGGCTCGGTGACCGCTCGTACGAGAAGCGCAAGAACGCCGCA
CTCGATCTGGAGCAGCACGTGAAATACCTGACGGAGAGGAACGACAAAaC
CCGCCTCCAAGCCACCCTCCATCTGCTGGGGCAAGAGTTCTGCACGTCGA
CGAATAGCAACCACAGGAAAGGCGGGCTTATCGCCCTGGCAGCCGCTGCC
ATTGGCTTGATGGGCAGCATCGAGGTGCTCCTTTACCCCatgcGGTGGCG
CCTCATATTCGTCCTTTCATCGCATTTCATCgtccgctttctcctcttcc
ctttcctccctttgcctttTCAAGGGTCCTGTGCGCAGCACGAGCGGTCT
CAACGCAACATGGTGAACGAATCGACCTCCTCAACaccatcctccgcctc
cgcctccgcggctgcgcccttcctctccccccatcAGAAAGTCACCGCCT
CGCCACATGCACAAGGAGAACCCCCCATACCACCCCACATTATCCGAGGG
CTCGGTGACCGCTCGTACGAGAAGCGCAAGAACGCCGCACTCGATCTGGA
GCAGCACGTGAAATACCTGACGGAGAGGAACGACAAAaCCCGCCTCCAAG
CCACCCTCCATCTGCTGGGGCAAGAGTTCTGCACGTCGACGAATAGCAAC
CACAGGAAAGGCGGGCTTATCGCCCTGGCAGCCGCTGCCATTGGCTTGAT
GGGCAGCATCGAGGTGCTCCTTTACCCCatgcGGTGGCGCCTCATATTCG
TCCTTTCATCGCATTTCATCgtccgctttctcctcttccctttcctccct
ttgcctttTCAAGGGTCCTGTGCGCAGCACGAGCGGTCTCAACGCAACAT
GGTGAACGAATCGACCTCCTCAACaccatcctccgcctccgcctccgcgg
ctgcgcccttcctctccccccatcAGAAAGTCACCGCCTCGCCACATGCA
CAAGGAGAACCCCCCATACCACCCCACATTATCCGAGGGCTCGGTGACCG
CTCGTACGAGAAGCGCAAGAACGCCGCACTCGATCTGGAGCAGCACGTGA
AATACCTGACGGAGAGGAACGACAAAaCCCGCCTCCAAGCCACCCTCCAT
CTGCTGGGGCAAGAGTTCTGCACGTCGACGAATAGCAACCACAGGAAAGG
CGGGCTTATCGCCCTGGCAGCCGCTGCCATTGGCTTGATGGGCAGCATCG
AGGTGCTCCTTTACCCC
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Synonyms
Publications