EWM23248.1, cds7425 (CDS) Nannochloropsis gaditana

Overview
NameEWM23248.1
Unique Namecds7425
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:597414..597673 +
Alignment locationCM002471.1:598030..598117 +
Alignment locationCM002471.1:598275..598415 +

Link to JBrowse

Properties
Property NameValue
End range.
End range598415
Protein idEWM23248.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101341g2.9405.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:597414..597673 +
CM002471.1supercontigCM002471.1:598030..598117 +
CM002471.1supercontigCM002471.1:598275..598415 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0043550regulation of lipid kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
GO:0005768endosome
GO:0070772PAS complex
Vocabulary: INTERPRO
TermDefinition
IPR026825Vac14
Homology
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|585104218|gb|EWM23248.1| (hypothetical protein Naga_101341g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 336.265 bits (861), Expect = 5.704e-117
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MRWRLIFVLSSHFIVRFLLFPFLPLPFQGSCAQHERSQRNMVNESTSSTPSSASASAAAPFLSPHQKVTASPHAQGEPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGSIEVLLYP 163
            MRWRLIFVLSSHFIVRFLLFPFLPLPFQGSCAQHERSQRNMVNESTSSTPSSASASAAAPFLSPHQKVTASPHAQGEPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGSIEVLLYP
Sbjct:    1 MRWRLIFVLSSHFIVRFLLFPFLPLPFQGSCAQHERSQRNMVNESTSSTPSSASASAAAPFLSPHQKVTASPHAQGEPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGSIEVLLYP 163          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|676394005|ref|XP_009040280.1| (hypothetical protein AURANDRAFT_38752, partial [Aureococcus anophagefferens] >gi|323449034|gb|EGB04925.1| hypothetical protein AURANDRAFT_38752, partial [Aureococcus anophagefferens])

HSP 1 Score: 115.931 bits (289), Expect = 4.959e-27
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 0
Query:   63 SPHQKVTASPHAQGEPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGSIEVLL 161
            +P  +V ++P    E P+PP I+R LGDRSY+KRKNAAL++E  +K L E ND  R+ + + +LGQ+F TSTN+NHRKGGLI LAA AIGLM  I + L
Sbjct:    3 TPSVEVVSAP---SESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLMQDIRLYL 98          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|299470767|emb|CBN79813.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.842 bits (268), Expect = 3.821e-24
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 0
Query:   76 GEPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGSIEVLL 161
             E P+ P I+RGLGDRSY+KRKNAAL++E  +K L + N+  R+ + + LLGQ+F TSTN NHRKGGLI LAA AIGLM + ++ L
Sbjct:   11 AESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNPNHRKGGLIGLAATAIGLMSATKLYL 96          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|676392601|ref|XP_009039578.1| (hypothetical protein AURANDRAFT_66238 [Aureococcus anophagefferens] >gi|323449854|gb|EGB05739.1| hypothetical protein AURANDRAFT_66238 [Aureococcus anophagefferens])

HSP 1 Score: 102.064 bits (253), Expect = 2.075e-23
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 0
Query:   84 IIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGSIEVLL 161
            I+R LGDRSY+KRKNAAL++E  +K L E ND  R+ + + +LGQ+F TSTN+NHRKGGLI LAA AIGLM  I + L
Sbjct:   21 ILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLMHDIRLYL 98          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|397643930|gb|EJK76164.1| (hypothetical protein THAOC_02086 [Thalassiosira oceanica])

HSP 1 Score: 104.375 bits (259), Expect = 5.180e-23
Identity = 49/91 (53.85%), Postives = 69/91 (75.82%), Query Frame = 0
Query:   77 EPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGS----IEVLLYP 163
            E P+PP + R LGDRSY+KRKNAAL++EQ VK L E ++   +Q+ + +L ++FCTS N+N+RKGGLI +AA +IGLMG+    +E LL+P
Sbjct:  151 ESPLPPLVQRSLGDRSYDKRKNAALEIEQLVKSLNEAHNVPMIQSIISILAKDFCTSMNANYRKGGLIGIAATSIGLMGNTRSHLEGLLFP 241          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|223994285|ref|XP_002286826.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220978141|gb|EED96467.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 103.605 bits (257), Expect = 1.179e-22
Identity = 49/89 (55.06%), Postives = 69/89 (77.53%), Query Frame = 0
Query:   79 PIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGS----IEVLLYP 163
            P+PP + R LGDRSY+KRKNAAL++EQ VK L+E ++   +Q+ + +L ++FCTS N+N+RKGGLI +AA AIGLMG+    +E LL+P
Sbjct:    2 PLPPLVQRSLGDRSYDKRKNAALEIEQLVKSLSEAHNVPMIQSIIAVLAKDFCTSMNANYRKGGLIGIAATAIGLMGNTRQFLEGLLFP 90          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|1072227847|gb|OEU12585.1| (ARM repeat-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 101.679 bits (252), Expect = 5.630e-22
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0
Query:   79 PIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMG 155
            P+PP I+R LGDRS EKRKNAAL++E  VK L E N+   +Q  + +L ++FCTS NSN+RKGGL+ LAA  IGLMG
Sbjct:    5 PLPPMILRSLGDRSNEKRKNAALEIEALVKNLQEANNLLMIQNVIEILSKDFCTSMNSNYRKGGLVGLAATGIGLMG 81          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|219128000|ref|XP_002184212.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404443|gb|EEC44390.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 95.1301 bits (235), Expect = 8.478e-20
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 0
Query:   77 EPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGL 153
            E P+PP + RGLGDRS +KRKNAAL++E  +K L E N+   +++ + +L  +FCTS NSN+RKGGLI LAA AIGL
Sbjct:    2 ESPLPPVVQRGLGDRSNDKRKNAALEIEALIKSLQEANNIGMIRSVITVLSNDFCTSMNSNYRKGGLIGLAATAIGL 78          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|1210515182|dbj|GAX25894.1| (vacuole morphology and inheritance protein 14 [Fistulifera solaris])

HSP 1 Score: 92.8189 bits (229), Expect = 6.058e-19
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 0
Query:   43 NESTSSTPSSASASAAAPFLSPHQKVTASPHAQGEPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLM 154
            NES    P  A+A      +   Q   A      E P+PP + RGLGDRS EKRKNAA++LE  ++ L E +  T +   L +L ++FCTS NSN+RKGGL+ LAA AIGL+
Sbjct:   36 NESRLHQPHGAAAFVTNQMIPSQQPQQALLQLSLESPLPPLLQRGLGDRSNEKRKNAAMELEALIQTLPEHS--TLIDTILQILAKDFCTSMNSNYRKGGLMGLAATAIGLL 145          
BLAST of EWM23248.1 vs. NCBI_GenBank
Match: gi|1210512817|dbj|GAX28115.1| (vacuole morphology and inheritance protein 14 [Fistulifera solaris])

HSP 1 Score: 92.8189 bits (229), Expect = 6.886e-19
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 0
Query:   77 EPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLM 154
            E P+PP + RGLGDRS EKRKNAA++LE  +K L E  + T + + + +L ++FCTS NSN+RKGGL+ LAA AIGL+
Sbjct:   25 ESPLPPLLQRGLGDRSNEKRKNAAMELEALIKTLPE--NTTLIDSIIQILAKDFCTSMNSNYRKGGLMGLAATAIGLL 100          
The following BLAST results are available for this feature:
BLAST of EWM23248.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104218|gb|EWM23248.1|5.704e-117100.00hypothetical protein Naga_101341g2, partial [Nanno... [more]
gi|676394005|ref|XP_009040280.1|4.959e-2755.56hypothetical protein AURANDRAFT_38752, partial [Au... [more]
gi|299470767|emb|CBN79813.1|3.821e-2458.14conserved unknown protein [Ectocarpus siliculosus][more]
gi|676392601|ref|XP_009039578.1|2.075e-2361.54hypothetical protein AURANDRAFT_66238 [Aureococcus... [more]
gi|397643930|gb|EJK76164.1|5.180e-2353.85hypothetical protein THAOC_02086 [Thalassiosira oc... [more]
gi|223994285|ref|XP_002286826.1|1.179e-2255.06predicted protein, partial [Thalassiosira pseudona... [more]
gi|1072227847|gb|OEU12585.1|5.630e-2259.74ARM repeat-containing protein [Fragilariopsis cyli... [more]
gi|219128000|ref|XP_002184212.1|8.478e-2057.14predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210515182|dbj|GAX25894.1|6.058e-1946.43vacuole morphology and inheritance protein 14 [Fis... [more]
gi|1210512817|dbj|GAX28115.1|6.886e-1956.41vacuole morphology and inheritance protein 14 [Fis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7443rna7443Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications