rna7438, rna7438 (mRNA) Nannochloropsis gaditana

Overview
Namerna7438
Unique Namerna7438
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length651
Alignment locationCM002471.1:586432..587409 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100460g3.10045.mrna
Orig protein idgnl|cribi|Naga_100460g3.10045
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:586432..587409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100460g3gene7196Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7438rna7438-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23253.1cds7420Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7438 ID=rna7438|Name=rna7438|organism=Nannochloropsis gaditana|type=mRNA|length=651bp
AACTACTCGTACTTTTTTTCCTGTAGCAGAGGAAGAGGATTCTCGCCGTC
CCACACTTCTATCGATCTTGCTCGTTGTTCTCTCCCCTTGCTGACATGTC
AGATAACCCGCTTACCTTGTTTTTCCCTTTTCTAGAGAAACTCATGGCGC
ACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTCTCCTGCTCGCC
ACGACTTTGTTGGTCTCTCTTGCTCTTCTCCCTCTTGCCGCTGGTTTCCT
ACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGGTAAAGTAACCA
CGTATACCCTTTTGGTGATCTGGACACATGCGTCTGGGACCTGTGGCTAT
TCCCTCCGTATCGCAGGGGCGTTGACAGACACAGGCAAGAGCAGGACGGG
GGAAAGGTCGCTTGCCCCGTTGGGGCGGCCTCGGTATCTGGGAGTGCGGG
TCAAGGGAGGGACGGAGGATGACGACCGGGAGCTCGCCGCCGAATTTTCC
CGGAGGCTGGAGGATGAGGAGGAGTCCCTCCCCCGTGTTCCGATCCGCAA
ATCTTCCTCCCCTTCTCCCGGCGGGGGCGTCCCTCAGAAAGTTGCCCAGC
GCTCCTTTGCGACAATGCCCAAGACTCAAAGCTACAACAAGGAGGACGGT
A
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protein sequence of rna7438

>rna7438-protein ID=rna7438-protein|Name=rna7438|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAG
FLLPSLPSSPAIRQGALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDD
DRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPK
TQSYNKEDG
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mRNA from alignment at CM002471.1:586432..587409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7438 ID=rna7438|Name=rna7438|organism=Nannochloropsis gaditana|type=mRNA|length=978bp|location=Sequence derived from alignment at CM002471.1:586432..587409+ (Nannochloropsis gaditana)
AACTACTCGTACTTTTTTTCCTgtagcagaggaagaggattcTCGCCGTC
CCACACTTCTATCGATCTTGCTCGTTGTTCTCTCCCCTTGCTGACATGTC
AGATAACCCGCTTACCTtgtttttcccttttctagAGAAACTCATGGCGC
ACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTCTCCTGCTCGCC
ACGACTTTGTTGGtctctcttgctcttctccctcttgccgCTGGTTTCCT
ACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGGTAAAGTAACCA
CGTATACCCTTTTGGTGATCTGGACACATGCGTCTGGGACCTGTGGCTAT
TCCCTCCGTATCGCAGGTAcaggaatggaaagaaagcgtTGTGGCTTTCC
ATTTAAGTCGCCGTAAACCCCTACTCTCCGAGTCTGCACTGCATCCCGGC
GGGCATGTCCCTCCTGTGTTgtttccccatcccctcatCACGCTTCCTTC
CGCCGTGCATGGCAGGGGCGTTGACAGACACAGGCAAGAgcaggacgggg
gaaaggtcGCTTGCCCCGTTGGGGCGGCCTCGGTATCTGGGAGTGCGggt
caagggagggacggaggatgACGACCGGGAGCTCGCCGCCGAATTTTCCC
GGAggctggaggatgaggaggaggtgagggaggggttggaggggaacaag
ggagggagagagcgccgACGGGAGGAATGGCAGGCACCCTGGGCCTGCCG
GACGTGGAGAGGCCCGGTCgttgacctcctccccccctccctccctccct
ccctccctccctccctgcctccctcccttcctttcctctcccccccctca
gtccctcccccgtgtTCCGATCCGCaaatcttcctccccttctcccggcG
GGGGCGTCCCTCAGAAAGTTGCCCAGCGCTCCTTTGCGACAATGCCCAAG
ACTCAAAGCTACAACAAGGAGGACGGTA
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Coding sequence (CDS) from alignment at CM002471.1:586432..587409+

>rna7438 ID=rna7438|Name=rna7438|organism=Nannochloropsis gaditana|type=CDS|length=1434bp|location=Sequence derived from alignment at CM002471.1:586432..587409+ (Nannochloropsis gaditana)
ATGTCAGATAACCCGCTTACCTtgtttttcccttttctagAGAAACTCAT
GGCGCACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTCTCCTGC
TCGCCACGACTTTGTTGGtctctcttgctcttctccctcttgccgCTGGT
TTCCTACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGGGGCGTT
GACAGACACAGGCAAGAgcaggacgggggaaaggtcGCTTGCCCCGTTGG
GGCGGCCTCGGTATCTGGGAGTGCGggtcaagggagggacggaggatgAC
GACCGGGAGCTCGCCGCCGAATTTTCCCGGAggctggaggatgaggagga
gtccctcccccgtgtTCCGATCCGCaaatcttcctccccttctcccggcG
GGGGCGTCCCTCAGAAAGTTGCCCAGCGCTCCTTTGCGACAATGCCCAAG
ACTCAAAGCTACAACAAGGAGGACGGTAATGTCAGATAACCCGCTTACCT
tgtttttcccttttctagAGAAACTCATGGCGCACCATAGAATACTGTCA
CGAAAGCCTTCACCATGTCCTCTCCTGCTCGCCACGACTTTGTTGGtctc
tcttgctcttctccctcttgccgCTGGTTTCCTACTCCCATCCTTGCCGT
CCTCGCCTGCAATACGTCAGGGGGCGTTGACAGACACAGGCAAGAgcagg
acgggggaaaggtcGCTTGCCCCGTTGGGGCGGCCTCGGTATCTGGGAGT
GCGggtcaagggagggacggaggatgACGACCGGGAGCTCGCCGCCGAAT
TTTCCCGGAggctggaggatgaggaggagtccctcccccgtgtTCCGATC
CGCaaatcttcctccccttctcccggcGGGGGCGTCCCTCAGAAAGTTGC
CCAGCGCTCCTTTGCGACAATGCCCAAGACTCAAAGCTACAACAAGGAGG
ACGGTAATGTCAGATAACCCGCTTACCTtgtttttcccttttctagAGAA
ACTCATGGCGCACCATAGAATACTGTCACGAAAGCCTTCACCATGTCCTC
TCCTGCTCGCCACGACTTTGTTGGtctctcttgctcttctccctcttgcc
gCTGGTTTCCTACTCCCATCCTTGCCGTCCTCGCCTGCAATACGTCAGGG
GGCGTTGACAGACACAGGCAAGAgcaggacgggggaaaggtcGCTTGCCC
CGTTGGGGCGGCCTCGGTATCTGGGAGTGCGggtcaagggagggacggag
gatgACGACCGGGAGCTCGCCGCCGAATTTTCCCGGAggctggaggatga
ggaggagtccctcccccgtgtTCCGATCCGCaaatcttcctccccttctc
ccggcGGGGGCGTCCCTCAGAAAGTTGCCCAGCGCTCCTTTGCGACAATG
CCCAAGACTCAAAGCTACAACAAGGAGGACGGTA
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Synonyms
Publications