EWM23253.1, cds7420 (CDS) Nannochloropsis gaditana

Overview
NameEWM23253.1
Unique Namecds7420
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:586527..586719 +
Alignment locationCM002471.1:586947..587104 +
Alignment locationCM002471.1:587283..587409 +

Link to JBrowse

Properties
Property NameValue
End range.
End range587409
Protein idEWM23253.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100460g3.10045.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:586527..586719 +
CM002471.1supercontigCM002471.1:586947..587104 +
CM002471.1supercontigCM002471.1:587283..587409 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23253.1 vs. NCBI_GenBank
Match: gi|585104231|gb|EWM23253.1| (hypothetical protein Naga_100460g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 314.694 bits (805), Expect = 1.948e-108
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 
Query:    1 MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAGFLLPSLPSSPAIRQGALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG 159
            MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAGFLLPSLPSSPAIRQGALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG
Sbjct:    1 MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAGFLLPSLPSSPAIRQGALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG 159
[Close]
BLAST of EWM23253.1 vs. NCBI_GenBank
Match: gi|585104232|gb|EWM23254.1| (hypothetical protein Naga_100460g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 301.982 bits (772), Expect = 4.995e-103
Identity = 159/185 (85.95%), Postives = 159/185 (85.95%), Query Frame = 0 
Query:    1 MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAGFLLPSLPSSPAIRQG--------------------------ALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG 159
            MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAGFLLPSLPSSPAIRQG                          ALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG
Sbjct:    1 MSDNPLTLFFPFLEKLMAHHRILSRKPSPCPLLLATTLLVSLALLPLAAGFLLPSLPSSPAIRQGKVTTYTLLVIWTHASGTCGYSLRIAGALTDTGKSRTGERSLAPLGRPRYLGVRVKGGTEDDDRELAAEFSRRLEDEEESLPRVPIRKSSSPSPGGGVPQKVAQRSFATMPKTQSYNKEDG 185
The following BLAST results are available for this feature:
BLAST of EWM23253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104231|gb|EWM23253.1|1.948e-108100.00hypothetical protein Naga_100460g3, partial [Nanno... [more]
gi|585104232|gb|EWM23254.1|4.995e-10385.95hypothetical protein Naga_100460g3, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7438rna7438Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications