rna7425, rna7425 (mRNA) Nannochloropsis gaditana

Overview
Namerna7425
Unique Namerna7425
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length384
Alignment locationCM002471.1:557746..558549 -

Link to JBrowse

Properties
Property NameValue
Productatp-binding sub-family g member 2c
Orig transcript idgnl|cribi|Naga_101647g1.7424.mrna
Orig protein idgnl|cribi|Naga_101647g1.7424
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:557746..558549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101647g1gene7184Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7425rna7425-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23265.1cds7407Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7425 ID=rna7425|Name=rna7425|organism=Nannochloropsis gaditana|type=mRNA|length=384bp
ATGACATGTTTACGTCTTATTGGTACCAAAGAATCCGCGTTGCTGGTAGT
GGAAGACAATCAGGAGGAGGTTTGCACTACCTGGCCTTTGCCCTCAAAGT
ATATAAGCCTTTTTATTTCTAAAACGTCGCTGTTGAGGGAGGCGAAGGGA
ACGGCAAGAGGTGACAAAGCTAGTGTTGTGTGTATTGTAAGTAGGGTAGT
GTTCACAGGGTCGCGTGGAATGAAAACGCTGGACATAAAGGACCCCTTCT
CACACGCGTCCAAAGTGTCCATGGCACGGTCGGGGTTGATGAAGACTCTC
TCTCTCCTGACAGCGCACCTGGCTCGCGGAGTAGAACGGGCAAAGGATCG
CTCGTTGATGGGCCGGGGCCCCGCTTGGTTGTGA
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protein sequence of rna7425

>rna7425-protein ID=rna7425-protein|Name=rna7425|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MSLKEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTSSVAPAATI
SFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILE
ILGARNSPTEGGGE
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mRNA from alignment at CM002471.1:557746..558549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7425 ID=rna7425|Name=rna7425|organism=Nannochloropsis gaditana|type=mRNA|length=804bp|location=Sequence derived from alignment at CM002471.1:557746..558549- (Nannochloropsis gaditana)
ATGTCACTGAAAGAGCCATTGCTGGGCGGCGCGTCGCGTGAGTTTTTGGT
GGAGAGAATAGGAAGGGAAATGGTAGCGGGGCATACGGGATGGGAGAGGT
ATGTCCGGATCGATGCTTCTTCATCTCCTTCCCGTGCATACAGACGCGAA
CGACGACGACGTGGAAGCACCGTCTGGCGTTGGGGAAAGCGGTGGATTAG
AAGACGGAGACGGCCTCGGGGCAGGAACGAGTAGTGTTGCTCCTGCCGCT
ACTATTAGCTTTTGGCACATTACGTGAGTGGCGGATCAAGGGTAGAAAGC
AATGTTTATATTCTTGCCTACTCAGCTTGATGTGGCAAACACCTATCGGG
TGAAAAAGACAATGAAGGGTAGGATTTTCCCCCGATATTATTCTTCTGAT
GTTCCGACTTTCGTCCCCTCTGCAACGCCGCGCCTGCCTTCGCCGTGTCT
TCCCCCCCCTTAGATACCGTGTGAACGACCGCCTGAGAAAAGGACGAAAG
AAAGTTCTCCTCGATGACATCTCAGGCATCGTCCGTCCGGGACAGGTAGA
GGAGGATGTTAGAGAGTGGAAACTGTGTGCGAGATGATGCACAGCGGGGG
GAGGGTTAGGAAGAGGAGGGGAGAAAAGAGCCTTCTCCGTCTCTTTCGCA
ATTCCTCCGTCGTCCATTTTCAATATTATTGATAAAAATACATACAACTC
TACTTTCAAAGGTATTGGCTATCATGGGTCCGTCTGGGTGTGGGAAGACT
TCGATATTGGAGATATTGGGCGCCCGCAATTCACCCACGGAGGGAGGTGG
GGAG
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Coding sequence (CDS) from alignment at CM002471.1:557746..558549-

>rna7425 ID=rna7425|Name=rna7425|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at CM002471.1:557746..558549- (Nannochloropsis gaditana)
GTATTGGCTATCATGGGTCCGTCTGGGTGTGGGAAGACTTCGATATTGGA
GATATTGGGCGCCCGCAATTCACCCACGGAGGGAGGTGGGGAGATACCGT
GTGAACGACCGCCTGAGAAAAGGACGAAAGAAAGTTCTCCTCGATGACAT
CTCAGGCATCGTCCGTCCGGGACAGACGCGAACGACGACGACGTGGAAGC
ACCGTCTGGCGTTGGGGAAAGCGGTGGATTAGAAGACGGAGACGGCCTCG
GGGCAGGAACGAGTAGTGTTGCTCCTGCCGCTACTATTAGCTTTTGGCAC
ATTACATGTCACTGAAAGAGCCATTGCTGGGCGGCGCGTCGCGTATTGGC
TATCATGGGTCCGTCTGGGTGTGGGAAGACTTCGATATTGGAGATATTGG
GCGCCCGCAATTCACCCACGGAGGGAGGTGGGGAGATACCGTGTGAACGA
CCGCCTGAGAAAAGGACGAAAGAAAGTTCTCCTCGATGACATCTCAGGCA
TCGTCCGTCCGGGACAGACGCGAACGACGACGACGTGGAAGCACCGTCTG
GCGTTGGGGAAAGCGGTGGATTAGAAGACGGAGACGGCCTCGGGGCAGGA
ACGAGTAGTGTTGCTCCTGCCGCTACTATTAGCTTTTGGCACATTACATG
TCACTGAAAGAGCCATTGCTGGGCGGCGCGTCGCGTATTGGCTATCATGG
GTCCGTCTGGGTGTGGGAAGACTTCGATATTGGAGATATTGGGCGCCCGC
AATTCACCCACGGAGGGAGGTGGGGAGATACCGTGTGAACGACCGCCTGA
GAAAAGGACGAAAGAAAGTTCTCCTCGATGACATCTCAGGCATCGTCCGT
CCGGGACAGACGCGAACGACGACGACGTGGAAGCACCGTCTGGCGTTGGG
GAAAGCGGTGGATTAGAAGACGGAGACGGCCTCGGGGCAGGAACGAGTAG
TGTTGCTCCTGCCGCTACTATTAGCTTTTGGCACATTACATGTCACTGAA
AGAGCCATTGCTGGGCGGCGCGTCGCGTATTGGCTATCATGGGTCCGTCT
GGGTGTGGGAAGACTTCGATATTGGAGATATTGGGCGCCCGCAATTCACC
CACGGAGGGAGGTGGGGAGATACCGTGTGAACGACCGCCTGAGAAAAGGA
CGAAAGAAAGTTCTCCTCGATGACATCTCAGGCATCGTCCGTCCGGGACA
GACGCGAACGACGACGACGTGGAAGCACCGTCTGGCGTTGGGGAAAGCGG
TGGATTAGAAGACGGAGACGGCCTCGGGGCAGGAACGAGTAGTGTTGCTC
CTGCCGCTACTATTAGCTTTTGGCACATTACATGTCACTGAAAGAGCCAT
TGCTGGGCGGCGCGTCGC
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Synonyms
Publications