EWM23265.1, cds7407 (CDS) Nannochloropsis gaditana

Overview
NameEWM23265.1
Unique Namecds7407
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:558513..558549 -
Alignment locationCM002471.1:558277..558406 -
Alignment locationCM002471.1:558005..558086 -
Alignment locationCM002471.1:557746..557838 -

Link to JBrowse

Properties
Property NameValue
Start range557746
Start range.
Protein idEWM23265.1
Productatp-binding sub-family g member 2c
Partialtrue
Orig transcript idgnl|cribi|Naga_101647g1.7424.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:558513..558549 -
CM002471.1supercontigCM002471.1:558277..558406 -
CM002471.1supercontigCM002471.1:558005..558086 -
CM002471.1supercontigCM002471.1:557746..557838 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR003439ABC_transporter-like
IPR027417P-loop_NTPase
Homology
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|585104260|gb|EWM23265.1| (atp-binding sub-family g member 2c, partial [Nannochloropsis gaditana])

HSP 1 Score: 226.483 bits (576), Expect = 5.645e-75
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MSLKEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE 114
            MSLKEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE
Sbjct:    1 MSLKEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE 114          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|1176299501|ref|XP_020652164.1| (LOW QUALITY PROTEIN: ATP-binding cassette sub-family G member 2-like [Pogona vitticeps])

HSP 1 Score: 68.5514 bits (166), Expect = 3.255e-11
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   41 TSSVAPAATISFWHITYRVNDRL-----RKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSP 108
            T S   A+T+SF +I YRV  +      RK  KK +L DI+GI+RPG + AI+GP+GCGK+S+L+IL AR  P
Sbjct:   26 TWSTTRASTVSFHNICYRVKTKTGFIGCRKIVKKNILTDINGIMRPG-LNAILGPTGCGKSSLLDILAARKDP 97          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|301116439|ref|XP_002905948.1| (ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] >gi|262109248|gb|EEY67300.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 68.1662 bits (165), Expect = 4.503e-11
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = 0
Query:   42 SSVAPAATISFWHITYR---VNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEG 111
            SS AP  T+ + +++ +   VN R ++  +KV+L ++SG  RPG++L IMGPSG GK+S+L+ +  RN   EG
Sbjct:   30 SSEAPKLTLQWRNLSLKATVVNPRTKQAEEKVILSNVSGTARPGELLVIMGPSGAGKSSLLDCISGRNKAVEG 102          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|695453876|ref|XP_009536320.1| (ABC transporter-like protein [Phytophthora sojae] >gi|348668324|gb|EGZ08148.1| ABC transporter-like protein [Phytophthora sojae])

HSP 1 Score: 67.781 bits (164), Expect = 5.966e-11
Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 0
Query:   41 TSSVAPAATISFWHITYR---VNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEG 111
            TS  AP  T+ + +++ +   +N R ++  +KV+L +++G  RPG++L IMGPSG GK+S+L+ +  RNS  EG
Sbjct:   27 TSPAAPKFTLQWRNLSLKAATINPRTKQKEEKVILQNVNGTARPGELLVIMGPSGAGKSSLLDCISGRNSAVEG 100          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|169855931|ref|XP_001834628.1| (hypothetical protein CC1G_10502 [Coprinopsis cinerea okayama7#130] >gi|116504328|gb|EAU87223.1| hypothetical protein CC1G_10502 [Coprinopsis cinerea okayama7#130])

HSP 1 Score: 67.3958 bits (163), Expect = 7.627e-11
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 0
Query:   34 GDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGG 112
            GD     +S  +  +T+S+ H+++ V+ +  KG  KVLLDD+S  ++ G++LAIMGPSG GK+++L+++  R  P EGG
Sbjct:   14 GDESTRASSHTSSGSTLSYQHLSFSVSTK--KG-SKVLLDDVSVDIKAGELLAIMGPSGAGKSTLLDLMAFRKQPAEGG 89          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|694369158|ref|XP_009362644.1| (PREDICTED: ABC transporter G family member 22-like isoform X4 [Pyrus x bretschneideri])

HSP 1 Score: 67.0106 bits (162), Expect = 1.098e-10
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0
Query:   41 TSSVAPAATISFWHITYRVNDR-LRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGG 113
            T S++    I F  +TY+V  + +R   +K +L+ I+G+V PG+VLA+MGPSG GKT++L +LG R S    GG
Sbjct:    5 TQSLSATTMIYFTDVTYKVIFKGMRTTEEKYILNGIAGLVNPGEVLALMGPSGSGKTTLLNLLGGRGSQANVGG 78          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|1018928858|dbj|GAT43830.1| (predicted protein [Mycena chlorophos])

HSP 1 Score: 67.0106 bits (162), Expect = 1.221e-10
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   42 SSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGG 112
            S VA  + + F H +Y V  +  KG  KVL+DD+S  VRPG++LAIMGPSG GK+++L+++  R +P EG 
Sbjct:   33 SGVASGSRLVFRHFSYEVAGKKGKGEGKVLVDDVSVTVRPGELLAIMGPSGAGKSTLLDLMAFRKTPREGA 103          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|648159585|gb|KDR73313.1| (hypothetical protein GALMADRAFT_251927 [Galerina marginata CBS 339.88])

HSP 1 Score: 66.2402 bits (160), Expect = 2.280e-10
Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   46 PAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGG 112
            P + +SF H++Y V  +   G+KK L+DDIS  +R G++LAIMGPSG GK+++L+++ +R +  EGG
Sbjct:   18 PGSVLSFKHLSYAV--KTPNGQKK-LIDDISVDIRAGELLAIMGPSGAGKSTLLDVMSSRKTTMEGG 81          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|359376776|emb|CCE87358.1| (Piso0_005908 [Millerozyma farinosa CBS 7064])

HSP 1 Score: 66.2402 bits (160), Expect = 2.442e-10
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0
Query:   64 RKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEG 111
            +KG KK LLD++SG ++PG+++A+MGPSG GKT++L IL  R  PT G
Sbjct:   26 KKGAKKCLLDNVSGSLKPGEIMALMGPSGSGKTTLLNILAHRKVPTHG 73          
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|366988059|ref|XP_003673796.1| (hypothetical protein NCAS_0A08570 [Naumovozyma castellii CBS 4309] >gi|342299659|emb|CCC67415.1| hypothetical protein NCAS_0A08570 [Naumovozyma castellii CBS 4309])

HSP 1 Score: 65.4698 bits (158), Expect = 3.753e-10
Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 0
Query:    4 KEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTS-----SVAPAATISFWHITYRV-----NDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE 114
            K PL     + ND  +  P         + GDG+G   +         +AT+SF +ITY V     N + +      +L  I GIV+PGQ+ AIMG SG GKT++L+IL  +    + GGE
Sbjct:  348 KSPLF---RNGNDGKIHLPDDA------DSGDGVGTAAAGDNFLKSETSATLSFENITYEVPSLNKNHKSQPNSNVKVLKSIDGIVKPGQIFAIMGGSGAGKTTLLDILAMKRKTGQVGGE 459          
The following BLAST results are available for this feature:
BLAST of EWM23265.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104260|gb|EWM23265.1|5.645e-75100.00atp-binding sub-family g member 2c, partial [Nanno... [more]
gi|1176299501|ref|XP_020652164.1|3.255e-1150.68LOW QUALITY PROTEIN: ATP-binding cassette sub-fami... [more]
gi|301116439|ref|XP_002905948.1|4.503e-1142.47ATP-binding Cassette (ABC) Superfamily [Phytophtho... [more]
gi|695453876|ref|XP_009536320.1|5.966e-1140.54ABC transporter-like protein [Phytophthora sojae] ... [more]
gi|169855931|ref|XP_001834628.1|7.627e-1141.77hypothetical protein CC1G_10502 [Coprinopsis ciner... [more]
gi|694369158|ref|XP_009362644.1|1.098e-1044.59PREDICTED: ABC transporter G family member 22-like... [more]
gi|1018928858|dbj|GAT43830.1|1.221e-1047.89predicted protein [Mycena chlorophos][more]
gi|648159585|gb|KDR73313.1|2.280e-1046.27hypothetical protein GALMADRAFT_251927 [Galerina m... [more]
gi|359376776|emb|CCE87358.1|2.442e-1056.25Piso0_005908 [Millerozyma farinosa CBS 7064][more]
gi|366988059|ref|XP_003673796.1|3.753e-1034.71hypothetical protein NCAS_0A08570 [Naumovozyma cas... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7425rna7425Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications