EWM23265.1, cds7407 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|585104260|gb|EWM23265.1| (atp-binding sub-family g member 2c, partial [Nannochloropsis gaditana]) HSP 1 Score: 226.483 bits (576), Expect = 5.645e-75 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query: 1 MSLKEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE 114
MSLKEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE
Sbjct: 1 MSLKEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE 114
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|1176299501|ref|XP_020652164.1| (LOW QUALITY PROTEIN: ATP-binding cassette sub-family G member 2-like [Pogona vitticeps]) HSP 1 Score: 68.5514 bits (166), Expect = 3.255e-11 Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0
Query: 41 TSSVAPAATISFWHITYRVNDRL-----RKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSP 108
T S A+T+SF +I YRV + RK KK +L DI+GI+RPG + AI+GP+GCGK+S+L+IL AR P
Sbjct: 26 TWSTTRASTVSFHNICYRVKTKTGFIGCRKIVKKNILTDINGIMRPG-LNAILGPTGCGKSSLLDILAARKDP 97
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|301116439|ref|XP_002905948.1| (ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] >gi|262109248|gb|EEY67300.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4]) HSP 1 Score: 68.1662 bits (165), Expect = 4.503e-11 Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = 0
Query: 42 SSVAPAATISFWHITYR---VNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEG 111
SS AP T+ + +++ + VN R ++ +KV+L ++SG RPG++L IMGPSG GK+S+L+ + RN EG
Sbjct: 30 SSEAPKLTLQWRNLSLKATVVNPRTKQAEEKVILSNVSGTARPGELLVIMGPSGAGKSSLLDCISGRNKAVEG 102
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|695453876|ref|XP_009536320.1| (ABC transporter-like protein [Phytophthora sojae] >gi|348668324|gb|EGZ08148.1| ABC transporter-like protein [Phytophthora sojae]) HSP 1 Score: 67.781 bits (164), Expect = 5.966e-11 Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 0
Query: 41 TSSVAPAATISFWHITYR---VNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEG 111
TS AP T+ + +++ + +N R ++ +KV+L +++G RPG++L IMGPSG GK+S+L+ + RNS EG
Sbjct: 27 TSPAAPKFTLQWRNLSLKAATINPRTKQKEEKVILQNVNGTARPGELLVIMGPSGAGKSSLLDCISGRNSAVEG 100
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|169855931|ref|XP_001834628.1| (hypothetical protein CC1G_10502 [Coprinopsis cinerea okayama7#130] >gi|116504328|gb|EAU87223.1| hypothetical protein CC1G_10502 [Coprinopsis cinerea okayama7#130]) HSP 1 Score: 67.3958 bits (163), Expect = 7.627e-11 Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 0
Query: 34 GDGLGAGTSSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGG 112
GD +S + +T+S+ H+++ V+ + KG KVLLDD+S ++ G++LAIMGPSG GK+++L+++ R P EGG
Sbjct: 14 GDESTRASSHTSSGSTLSYQHLSFSVSTK--KG-SKVLLDDVSVDIKAGELLAIMGPSGAGKSTLLDLMAFRKQPAEGG 89
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|694369158|ref|XP_009362644.1| (PREDICTED: ABC transporter G family member 22-like isoform X4 [Pyrus x bretschneideri]) HSP 1 Score: 67.0106 bits (162), Expect = 1.098e-10 Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0
Query: 41 TSSVAPAATISFWHITYRVNDR-LRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGG 113
T S++ I F +TY+V + +R +K +L+ I+G+V PG+VLA+MGPSG GKT++L +LG R S GG
Sbjct: 5 TQSLSATTMIYFTDVTYKVIFKGMRTTEEKYILNGIAGLVNPGEVLALMGPSGSGKTTLLNLLGGRGSQANVGG 78
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|1018928858|dbj|GAT43830.1| (predicted protein [Mycena chlorophos]) HSP 1 Score: 67.0106 bits (162), Expect = 1.221e-10 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0
Query: 42 SSVAPAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGG 112
S VA + + F H +Y V + KG KVL+DD+S VRPG++LAIMGPSG GK+++L+++ R +P EG
Sbjct: 33 SGVASGSRLVFRHFSYEVAGKKGKGEGKVLVDDVSVTVRPGELLAIMGPSGAGKSTLLDLMAFRKTPREGA 103
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|648159585|gb|KDR73313.1| (hypothetical protein GALMADRAFT_251927 [Galerina marginata CBS 339.88]) HSP 1 Score: 66.2402 bits (160), Expect = 2.280e-10 Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = 0
Query: 46 PAATISFWHITYRVNDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGG 112
P + +SF H++Y V + G+KK L+DDIS +R G++LAIMGPSG GK+++L+++ +R + EGG
Sbjct: 18 PGSVLSFKHLSYAV--KTPNGQKK-LIDDISVDIRAGELLAIMGPSGAGKSTLLDVMSSRKTTMEGG 81
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|359376776|emb|CCE87358.1| (Piso0_005908 [Millerozyma farinosa CBS 7064]) HSP 1 Score: 66.2402 bits (160), Expect = 2.442e-10 Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 64 RKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEG 111
+KG KK LLD++SG ++PG+++A+MGPSG GKT++L IL R PT G
Sbjct: 26 KKGAKKCLLDNVSGSLKPGEIMALMGPSGSGKTTLLNILAHRKVPTHG 73
BLAST of EWM23265.1 vs. NCBI_GenBank
Match: gi|366988059|ref|XP_003673796.1| (hypothetical protein NCAS_0A08570 [Naumovozyma castellii CBS 4309] >gi|342299659|emb|CCC67415.1| hypothetical protein NCAS_0A08570 [Naumovozyma castellii CBS 4309]) HSP 1 Score: 65.4698 bits (158), Expect = 3.753e-10 Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 0
Query: 4 KEPLLGGASHANDDDVEAPSGVGESGGLEDGDGLGAGTS-----SVAPAATISFWHITYRV-----NDRLRKGRKKVLLDDISGIVRPGQVLAIMGPSGCGKTSILEILGARNSPTEGGGE 114
K PL + ND + P + GDG+G + +AT+SF +ITY V N + + +L I GIV+PGQ+ AIMG SG GKT++L+IL + + GGE
Sbjct: 348 KSPLF---RNGNDGKIHLPDDA------DSGDGVGTAAAGDNFLKSETSATLSFENITYEVPSLNKNHKSQPNSNVKVLKSIDGIVKPGQIFAIMGGSGAGKTTLLDILAMKRKTGQVGGE 459 The following BLAST results are available for this feature:
BLAST of EWM23265.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|