rna7424, rna7424 (mRNA) Nannochloropsis gaditana

Overview
Namerna7424
Unique Namerna7424
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length819
Alignment locationCM002471.1:556007..556843 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100829g3.9009.mrna
Orig protein idgnl|cribi|Naga_100829g3.9009
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:556007..556843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100829g3gene7183Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7424rna7424-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23269.1cds7406Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7424 ID=rna7424|Name=rna7424|organism=Nannochloropsis gaditana|type=mRNA|length=819bp
ATGGCTCGAAATGAAGAAAAAGCGCAAGCCATGCTCAATAAGTGGCTGAC
CATGAAAAAGGATTTGGCAACCGGCGACAAAGAACGGCGCCCTTTCCTTT
CCTCTGACTGCCACGTGTTATCGGAGGCGGAGCGTTGGCGGCGACAGATC
ATCAAGGAAGTGACCAAAAAGGTGTCGGAGGTACAAAATGCAGGGCTGGG
CGAGCACCGTCTCCGTGACCTCAACGACCAGATCAACAAGCTTTTGAGGG
AGAAGTACCATTGGCAGAAACGCATCAAGGAGCTAGGCGGACCTGATTAC
AACCGGATCGAACCTCGCGCGTACGATGCGGACGGCCGAGAACTTCCGGG
AGGAGGCGGGTACCGATACTTTGGCGCCGCCAAGGACCTCCCGGGTGTGA
AGGAGCTCTTTCAGAAGTCAGCGCCGAAGGAGATGCGTCGTACGAGGGGG
GACATGTATAAAGGGATCGATCCCGACTACTATGGCTACAGGGACGAGGA
GGATGGGATTCTGTTGGAGAAGGAGCGGGAAGCTGAAAAGGAAGCAATCG
CGGCTGCGGTGCGTCAATTCAAAAAGAGAGCCCGGGAAGAAAAAGGGGAG
GGGGAGGAGACGGAGGAGGGCGCGAAGGAGGAGGAGGAGGAGGAGAGGCT
TCTGGCTCAGTCTCTGATAGCGGCGACCGAGTCGGTGGCAGGGGGGGCGG
CGGCCAGCGCCGCGACCAGTGCGGCTGTGAAAGCCCACGTTCCAGTGCCT
TGCCAGGAAGATATCATGACGGCTTTGATGGAAAAGAAAAAAAGGGCCTT
ACTCTCCAAGTATGGATGA
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protein sequence of rna7424

>rna7424-protein ID=rna7424-protein|Name=rna7424|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MTCLRLIGTKESALLVVEDNQEEVCTTWPLPSKYISLFISKTSLLREAKG
TARGDKASVVCIVSRVVFTGSRGMKTLDIKDPFSHASKVSMARSGLMKTL
SLLTAHLARGVERAKDRSLMGRGPAWL
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mRNA from alignment at CM002471.1:556007..556843+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7424 ID=rna7424|Name=rna7424|organism=Nannochloropsis gaditana|type=mRNA|length=837bp|location=Sequence derived from alignment at CM002471.1:556007..556843+ (Nannochloropsis gaditana)
ATGACATGTTTACGTCTTATTGGTACCAAAGGTCAAAAAATGGTGTATTA
CGCTAGGATGTCTAGGATTTGAGCCCAGAATCCGCGTTGCTGGTAGTGGA
AGACAATCAGGAGGAGGTTTGCACTACCTGGCCTTTGCCCTCAAAGTATA
TAAGCCTTTTTATTTCTAAAACGTCGCTGTGTGCGTCAATTTTTCTCACA
CACATACCAATTGTCAACATGTTCAAAAAATTGGCACGACGGaccgtctt
tcctcctccctttgcgTCTGCCTCCGCGGATTCTGTCGCCTCTTTCTACT
TCCCCTACTTTCCATCCCAAACGAAGGGCAGCAGACACTCGTCCCGATGG
AAATGGCCATAGCGGACGTCTCTCACGATGTAGGTGCGGGCGTGTCTACT
CATGAGACAGGatgaatgaggaggaaggctgggtCGTGTCGGCGCGGTGG
GCAACTGGGCCTTGGTAGCGTCTCGCTGCATGAGGAGAGGGAACAACACC
ATGCCCGACACACTGTCACTTCCTAATTCACCACCcgatatatatatgta
tatatatatatatataaataTGTATTTTATGGATagtgagggaggcgaag
ggaacGGCAAGAGGTGACAAAGCTAGTGTTGTGTGTATTGTAAGTAGGGT
AGTGTTCACAGGGTCGCGTGGAATGAAAACGCTGGACATAAAGGACCCCT
TCTCACACGCGTCCAAAGTGTCCATGGCACGGTCGGGGTTGATGAAGACT
CTCTCTCTCCTGACAGCGCACCTGGCTCGCGGAGTAGAACGGGCAAAGGA
TCGCTCGTTGATGGGCCGGGGCCCCGCTTGGTTGTGA
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Coding sequence (CDS) from alignment at CM002471.1:556007..556843+

>rna7424 ID=rna7424|Name=rna7424|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at CM002471.1:556007..556843+ (Nannochloropsis gaditana)
ATGACATGTTTACGTCTTATTGGTACCAAAGAATCCGCGTTGCTGGTAGT
GGAAGACAATCAGGAGGAGGTTTGCACTACCTGGCCTTTGCCCTCAAAGT
ATATAAGCCTTTTTATTTCTAAAACGTCGCTGTtgagggaggcgaaggga
acGGCAAGAGGTGACAAAGCTAGTGTTGTGTGTATTGTAAGTAGGGTAGT
GTTCACAGGGTCGCGTGGAATGAAAACGCTGGACATAAAGGACCCCTTCT
CACACGCGTCCAAAGTGTCCATGGCACGGTCGGGGTTGATGAAGACTCTC
TCTCTCCTGACAGCGCACCTGGCTCGCGGAGTAGAACGGGCAAAGGATCG
CTCGTTGATGGGCCGGGGCCCCGCTTGGTTGTGAATGACATGTTTACGTC
TTATTGGTACCAAAGAATCCGCGTTGCTGGTAGTGGAAGACAATCAGGAG
GAGGTTTGCACTACCTGGCCTTTGCCCTCAAAGTATATAAGCCTTTTTAT
TTCTAAAACGTCGCTGTtgagggaggcgaagggaacGGCAAGAGGTGACA
AAGCTAGTGTTGTGTGTATTGTAAGTAGGGTAGTGTTCACAGGGTCGCGT
GGAATGAAAACGCTGGACATAAAGGACCCCTTCTCACACGCGTCCAAAGT
GTCCATGGCACGGTCGGGGTTGATGAAGACTCTCTCTCTCCTGACAGCGC
ACCTGGCTCGCGGAGTAGAACGGGCAAAGGATCGCTCGTTGATGGGCCGG
GGCCCCGCTTGGTTGTGAATGACATGTTTACGTCTTATTGGTACCAAAGA
ATCCGCGTTGCTGGTAGTGGAAGACAATCAGGAGGAGGTTTGCACTACCT
GGCCTTTGCCCTCAAAGTATATAAGCCTTTTTATTTCTAAAACGTCGCTG
TtgagggaggcgaagggaacGGCAAGAGGTGACAAAGCTAGTGTTGTGTG
TATTGTAAGTAGGGTAGTGTTCACAGGGTCGCGTGGAATGAAAACGCTGG
ACATAAAGGACCCCTTCTCACACGCGTCCAAAGTGTCCATGGCACGGTCG
GGGTTGATGAAGACTCTCTCTCTCCTGACAGCGCACCTGGCTCGCGGAGT
AGAACGGGCAAAGGATCGCTCGTTGATGGGCCGGGGCCCCGCTTGGTTGT
GA
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Synonyms
Publications