rna7420, rna7420 (mRNA) Nannochloropsis gaditana

Overview
Namerna7420
Unique Namerna7420
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length333
Alignment locationCM002471.1:551252..551811 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102672g1.2316.mrna
Orig protein idgnl|cribi|Naga_102672g1.2316
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:551252..551811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102672g1gene7179Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7420rna7420-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23270.1cds7403Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7420 ID=rna7420|Name=rna7420|organism=Nannochloropsis gaditana|type=mRNA|length=333bp
ATGTTCTCTTTGTCCGTACGACGGGCTTTAAGGCCCTACAGCGTGAAGAT
GCAGCCACTACGAGTGCTTCAGCTGGTGGTTTGGCTCGCTACGACTGTGG
TCATGGCAGGAGCTGCAGGCACGACGAAAAACAAGACACCCGAGCGAAAA
ACCGCCCAACTGGCTGCTTTGCACAAGCGGACTGCCTCCCATGGGGTCAT
TCACATGACCGATGATTTATACCCCCACGGACCCCAAGTACCGGTGTCTG
CAGTGCCTGGCCATCGAGCTGGAATTCGATATATGCGCCGACAATTACTA
CCGCCTCTACCCGGATGTATCCTCCAACTGTAG
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protein sequence of rna7420

>rna7420-protein ID=rna7420-protein|Name=rna7420|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MTLTGLFSLPPSFPPSLPPFLSPQHIAHLPPQVSHARGLRGRGRHRVMGE
HQGGSEHQHLQIALARHSLLPLFPPPYGPGRAAPPLLPPNSPRLGAQHLP
LDVCLRSFLHLFDQRAGF
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mRNA from alignment at CM002471.1:551252..551811+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7420 ID=rna7420|Name=rna7420|organism=Nannochloropsis gaditana|type=mRNA|length=560bp|location=Sequence derived from alignment at CM002471.1:551252..551811+ (Nannochloropsis gaditana)
ATGACGCTAACGggccttttctctctccctccttccttccctccctctct
ccctcccttcctctcgccacAGCACATCGCCCACCTGCCCCCGTCCACGG
GCGGGGATTTTGACGCCGAGAAGGCTCCTCAGCTGGCAAACAAAGACAAG
TTTCCCATGCACGCGGGTaaggccctgcctccctcccttcctgtcaTCGG
CAGGCACCAGATCGACGCTCGTTGTTCCGCACGGAATCGtcacgctccct
ccctccctcccttcctccctccctcccctcccttcccctccctccttccc
tccttgcctctcccAGGCTACGTGGACGCGGACGGCATCGCGTCATGGGT
GAACACCAAGGCGGAAGTGAACATCAACATCTACAAATCGCCCTGGCCCG
TcattctcttctccctctttttcctcctccttatGGCCCTGGTCGcgcgg
cccctcctctccttcctcccaactCTCCTCGTTTGGGCGCGCAACACCTA
CCTCTGGATGTTTGTTTGCGCAGCTTTTTACATTTGTTCGATCAGCGGGC
TGGTTTTTGA
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Coding sequence (CDS) from alignment at CM002471.1:551252..551811+

>rna7420 ID=rna7420|Name=rna7420|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002471.1:551252..551811+ (Nannochloropsis gaditana)
ATGACGCTAACGggccttttctctctccctccttccttccctccctctct
ccctcccttcctctcgccacAGCACATCGCCCACCTGCCCCCACAAGTTT
CCCATGCACGCGGGCTACGTGGACGCGGACGGCATCGCGTCATGGGTGAA
CACCAAGGCGGAAGTGAACATCAACATCTACAAATCGCCCTGGCCCGTca
ttctcttctccctctttttcctcctccttatGGCCCTGGTCGcgcggccc
ctcctctccttcctcccaactCTCCTCGTTTGGGCGCGCAACACCTACCT
CTGGATGTTTGTTTGCGCAGCTTTTTACATTTGTTCGATCAGCGGGCTGG
TTTTTGAATGACGCTAACGggccttttctctctccctccttccttccctc
cctctctccctcccttcctctcgccacAGCACATCGCCCACCTGCCCCCA
CAAGTTTCCCATGCACGCGGGCTACGTGGACGCGGACGGCATCGCGTCAT
GGGTGAACACCAAGGCGGAAGTGAACATCAACATCTACAAATCGCCCTGG
CCCGTcattctcttctccctctttttcctcctccttatGGCCCTGGTCGc
gcggcccctcctctccttcctcccaactCTCCTCGTTTGGGCGCGCAACA
CCTACCTCTGGATGTTTGTTTGCGCAGCTTTTTACATTTGTTCGATCAGC
GGGCTGGTTTTTGAATGACGCTAACGggccttttctctctccctccttcc
ttccctccctctctccctcccttcctctcgccacAGCACATCGCCCACCT
GCCCCCACAAGTTTCCCATGCACGCGGGCTACGTGGACGCGGACGGCATC
GCGTCATGGGTGAACACCAAGGCGGAAGTGAACATCAACATCTACAAATC
GCCCTGGCCCGTcattctcttctccctctttttcctcctccttatGGCCC
TGGTCGcgcggcccctcctctccttcctcccaactCTCCTCGTTTGGGCG
CGCAACACCTACCTCTGGATGTTTGTTTGCGCAGCTTTTTACATTTGTTC
GATCAGCGGGCTGGTTTTTGA
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Synonyms
Publications