rna7417, rna7417 (mRNA) Nannochloropsis gaditana

Overview
Namerna7417
Unique Namerna7417
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length936
Alignment locationCM002471.1:547527..548200 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101087g1.4494.mrna
Orig protein idgnl|cribi|Naga_101087g1.4494
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:547527..548200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101087g1gene7176Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7417rna7417-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23274.1cds7400Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7417 ID=rna7417|Name=rna7417|organism=Nannochloropsis gaditana|type=mRNA|length=936bp
ATGCTTCGATTGTGTAGAAGTAGTGTGGTTGCGGAGACTCCCAAGAGGTG
CAGGGACCTTGCCTACCACGACACCACCACCGTGCCGCTGAGATTGTACA
GTGAGGGGTTTCTCTCTCTTCCCGTATACATATTTGGTACAGTCCTCGTC
CACACACAAACGCACACACCTTCCCCGCCAAGACGCGCGGCCACTGCACA
AGAGCAGCCTAGGTGGGAGCCCGGGCAGCGACACCCATCACAGCAACAGC
AGTTGTTGACGACAGTAGGAAGACGCAGTCAAGGTGTCTCCTGTGACGGA
AAAACCGCAGTTTGTCGACGCTGCGGTGGTGATAGAGAGCGGGCGTCATT
CTCCCTACGGCCAAGGCACCGAGGACAGCCTTGCCGAGAAGGGAAAGGAA
GAAGAGATTCGAGAAGCACAGCATTTGACTCTGTTGAAAGGCATGTTGGG
GGAGCAAGCGACGAACGGGCACGGGGACGGAAGCGGGAGCAATGCCAGCC
GGAGCGCGGCGCCCCGCCCACGGACCATGCCTTTGCCCCCGAGCACGACC
CGCGCAACGAGCTGGATTATTTCTATTACTACCAGCCCAACAGCCTGAAC
CCGCGTTTGCCCATGGAGGAGAACGGAAAAGGTGGCGGGGAAGACGGGGA
GGTGGCAGCCCTGCCGGCGGAAGCCTTGTCAGGCCTGGCTTCCTCGGGGG
GCTCCCAGGACGACACGGGCTTGTTCGGCCCCCATTTGAATTTGAATCTG
GCCCAACCGTTGAAAGCCTCGGCGCCTGGGGGAAGCATGGTGGCAGAATA
CCTTTCGAATTTTGGCGCGAAAGGAGGGACGACGGCGTCGGGGGCCTCAA
CGGCCAATGCCATGTCCCTGGAGGGGATGAACGTGGCCCCTCGGCCCATT
CGCCCTCCCTCTCTGAGACGAGCCTCTTGCGATTGA
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protein sequence of rna7417

>rna7417-protein ID=rna7417-protein|Name=rna7417|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MCLELALSGRGILFLILFLPSVPSEMATEMARSPALHPPSPPPLPQQCRQ
QQQRQEPEYFRSRVSYGRMIRRTWQPAWQSAPNSWSRPCLLIASGFCTAL
GVGYQAVAIAGWLQYYLLLRFLDRGRRRLRLWVLAWLVHAAGWTLAMAVG
R
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mRNA from alignment at CM002471.1:547527..548200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7417 ID=rna7417|Name=rna7417|organism=Nannochloropsis gaditana|type=mRNA|length=674bp|location=Sequence derived from alignment at CM002471.1:547527..548200+ (Nannochloropsis gaditana)
ACTGCTCGCGAATGTGCTTGGAACTCGCGTTGTCAGGGCGTGGCATCCTT
TTCCTtatccttttcctgccttcAGTCCCCTCAGAGATGGCAACAGAGAT
GGCAAGAAGTCCTGCCTTGCACCcaccgtcgccgccgccactgcccCAAC
AGTGtcgacagcaacagcaacggCAAGAACCGGAATATTTTCGTTCACGT
GTCTCATACGGCAGAATGATACGAAGGACATGGCAGCCTGCCTGGCAAAG
CGCCCCTAATAGTTGGAGTCGGCCATGCCTGTTGATTGCCTCCGGCTTTT
GTACGGCCTTGGGAGTTGGTTATCAAGCCGTGGCCATTGCTGGCTGGTTA
CAGGTGGGTAAGCTCGTGGAAAGTTGTATCAACGTTCTCATaattccccc
cccaaaaaagcaCCACATGCTGAGACGGGCACACGTTGTTCGTTGGCGTC
GATTTTTTCTTGTCAGCGTCCCAACCTATTCCTTTTCTTGCACGCACTCT
GTCCTTTCAGTATTATCTCCTCCTACGATTCTTGGACCGTGGCCGTCGGC
GGTTGCGCCTGTGGGTACTGGCATGGTTGGTGCATGCGGCAGGATGGACC
CTGGCGATGGCggtaggtaggtagggagggagggagaggggagggagggt
agaaAAGggtgaaggtgggaagga
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Coding sequence (CDS) from alignment at CM002471.1:547527..548200+

>rna7417 ID=rna7417|Name=rna7417|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002471.1:547527..548200+ (Nannochloropsis gaditana)
ATGTGCTTGGAACTCGCGTTGTCAGGGCGTGGCATCCTTTTCCTtatcct
tttcctgccttcAGTCCCCTCAGAGATGGCAACAGAGATGGCAAGAAGTC
CTGCCTTGCACCcaccgtcgccgccgccactgcccCAACAGTGtcgacag
caacagcaacggCAAGAACCGGAATATTTTCGTTCACGTGTCTCATACGG
CAGAATGATACGAAGGACATGGCAGCCTGCCTGGCAAAGCGCCCCTAATA
GTTGGAGTCGGCCATGCCTGTTGATTGCCTCCGGCTTTTGTACGGCCTTG
GGAGTTGGTTATCAAGCCGTGGCCATTGCTGGCTGGTTACAGTATTATCT
CCTCCTACGATTCTTGGACCGTGGCCGTCGGCGGTTGCGCCTGTGGGTAC
TGGCATGGTTGGTGCATGCGGCAGGATGGACCCTGGCGATGGCggtaggt
aggtagATGTGCTTGGAACTCGCGTTGTCAGGGCGTGGCATCCTTTTCCT
tatccttttcctgccttcAGTCCCCTCAGAGATGGCAACAGAGATGGCAA
GAAGTCCTGCCTTGCACCcaccgtcgccgccgccactgcccCAACAGTGt
cgacagcaacagcaacggCAAGAACCGGAATATTTTCGTTCACGTGTCTC
ATACGGCAGAATGATACGAAGGACATGGCAGCCTGCCTGGCAAAGCGCCC
CTAATAGTTGGAGTCGGCCATGCCTGTTGATTGCCTCCGGCTTTTGTACG
GCCTTGGGAGTTGGTTATCAAGCCGTGGCCATTGCTGGCTGGTTACAGTA
TTATCTCCTCCTACGATTCTTGGACCGTGGCCGTCGGCGGTTGCGCCTGT
GGGTACTGGCATGGTTGGTGCATGCGGCAGGATGGACCCTGGCGATGGCg
gtaggtaggtag
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Synonyms
Publications