rna7415, rna7415 (mRNA) Nannochloropsis gaditana

Overview
Namerna7415
Unique Namerna7415
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length582
Alignment locationCM002471.1:543254..544323 -

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Properties
Property NameValue
ProductPumilio RNA-binding repeat containing protein
Orig transcript idgnl|cribi|Naga_101027g1.10516.mrna
Orig protein idgnl|cribi|Naga_101027g1.10516
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:543254..544323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101027g1gene7174Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7415rna7415-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23275.1cds7398Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7415 ID=rna7415|Name=rna7415|organism=Nannochloropsis gaditana|type=mRNA|length=582bp
ATGGCCGTGTCGCGGGAAAGTTCCAGGGGATGGGATGTGTGGGTGCCAAA
ACGCGGAGCGAGGCAGGGCAGGGAAGGTATCGGATGTGGAAGACTGAGGT
TCCGGGGACAGGACGCACTGATGCTAGGGCCGGCGAGCTCCGGCTTGGCA
CCCGTCAAGGACGGCCAGTGCGGTCAATGTAGCAGCGGCAGGCTGAAGAT
CTTACATATACGTGTATGCTATGCAGAGGCGAGTCGTGACGAAGGCCAGA
AGAGGGAAGGGGGGGCTAGGCATGGCATATGGCTACGGACTGAGCATGCT
GGGGCTTCGACGACGGCACATTTTCCCAAAAGACGGGCATGTGGGAGCAT
GGCGGGGCTTTGTGATGAGCAGAGATGGGACGTACTTGCCCGAGAAAAAG
TCAAACGACTGCCCAGTGAAGACTGGATTGACTGGGCCCATGTGGAAATG
GAAAGGCGAGGGGGAGGGAGCGGAAAGGAGGGGGGGCGACGTGGGAGGAC
AAGTAGACGAGCGGATAGGATGATGCAGGCAGGGACAACGCGGATGCAGG
GCTTAAATCGTGTACGTAAACATAAGTTGTAG
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protein sequence of rna7415

>rna7415-protein ID=rna7415-protein|Name=rna7415|organism=Nannochloropsis gaditana|type=polypeptide|length=212bp
MRPRPERQPHHPEYAAFLLPQLEFIINAFVGQGNNVEKFSTHPYGCRVIQ
RILEHCTGAQKSAILDEIRKSSSTLIQDQYGNYVIQHVMKHGRPNDRQMV
INEVKSRMLVYSQHKFASNVVEKCLQYGSKAERNDIIDEVVRSVLDKSSL
LQVMVRDPYGNYVVQKILDIADDRQQEALCTYLRSCAPQLRRYTYGKHIL
VRLEKISGEKLV
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mRNA from alignment at CM002471.1:543254..544323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7415 ID=rna7415|Name=rna7415|organism=Nannochloropsis gaditana|type=mRNA|length=1070bp|location=Sequence derived from alignment at CM002471.1:543254..544323- (Nannochloropsis gaditana)
ATGCGTCCACGACCAGAACGGCAACCACGTGATCCAGAAATGCATCGAAG
TGCTCTCTGTCCGATCCAAAGACCATCCGGAATACGCTGCCTTCCTCCTT
CCACAGCTGGAATTCATCATCAACGCCTTTGTGGGACAGGTGGGTCTTTT
GCCCCTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTCACCT
CGCTCCTTTCCCTCCACCCGTGCTTTTTCAGGGGAACAACGTGGAGAAAT
TCAGCACGCACCCCTACGGCTGCCGCGTCATCCAACGCATTCTAGAACAT
TGCACGGGCGCGCAGAAAAGTGCCATTCTTGACGAGATTCGGAAGAGCTC
TTCCACACTCATTCAAGATCAGTACGGCAACTACGTGATCCAACATGTCA
TGAAGGTGCGTTGTGCCCCACCCCCTTTCCCTCCCTCCTTCCCTCCCTCC
TTCCCCCCATCCTCTCCCGTGTCTTGAGGACGCTGAGCCCCTCCGATTAG
GATGAGGACGCTACTCAAGCCTTCACCTTCTCTCCCTCCCTCTCTCCCTC
CTTTCCCCTTTCGCTTTGTAGCACGGCCGTCCAAACGATCGACAGATGGT
GATTAATGAGGTGAAGAGCCGCATGCTCGTGTACTCGCAGCACAAGTTTG
CCTCCAATGTGGTGGAGAAATGCTTGCAGGTAGGAGGGAGGGACGGAGGG
AGGGAAGGAGGGAGAGGTGGGAGGGTACACGAAAGGGAAGGACGCCCTAG
ACCCCTCCTCATTGGCGGGGCCTCTCCCTCCTCGTTTCCTCCCTCCCCCT
CGGGCACAGTACGGGAGTAAGGCCGAGCGCAACGACATCATCGACGAGGT
GGTGCGCTCCGTCTTGGACAAATCTTCCCTCTTGCAGGTGATGGTCCGAG
ACCCTTATGGGAACTACGTGGTGCAGAAGATCTTGGACATCGCTGACGAC
CGGCAGCAGGAGGCGCTTTGCACTTACCTTAGGTCGTGTGCGCCCCAATT
GAGGCGGTACACGTATGGGAAGCACATATTGGTTCGGTTGGAGAAGATCA
GCGGGGAGAAATTGGTTTGA
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Coding sequence (CDS) from alignment at CM002471.1:543254..544323-

>rna7415 ID=rna7415|Name=rna7415|organism=Nannochloropsis gaditana|type=CDS|length=3195bp|location=Sequence derived from alignment at CM002471.1:543254..544323- (Nannochloropsis gaditana)
TACGGGAGTAAGGCCGAGCGCAACGACATCATCGACGAGGTGGTGCGCTC
CGTCTTGGACAAATCTTCCCTCTTGCAGGTGATGGTCCGAGACCCTTATG
GGAACTACGTGGTGCAGAAGATCTTGGACATCGCTGACGACCGGCAGCAG
GAGGCGCTTTGCACTTACCTTAGGTCGTGTGCGCCCCAATTGAGGCGGTA
CACGTATGGGAAGCACATATTGGTTCGGTTGGAGAAGATCAGCGGGGAGA
AATTGGTTTGACACGGCCGTCCAAACGATCGACAGATGGTGATTAATGAG
GTGAAGAGCCGCATGCTCGTGTACTCGCAGCACAAGTTTGCCTCCAATGT
GGTGGAGAAATGCTTGCAGGGGAACAACGTGGAGAAATTCAGCACGCACC
CCTACGGCTGCCGCGTCATCCAACGCATTCTAGAACATTGCACGGGCGCG
CAGAAAAGTGCCATTCTTGACGAGATTCGGAAGAGCTCTTCCACACTCAT
TCAAGATCAGTACGGCAACTACGTGATCCAACATGTCATGAAGACCATCC
GGAATACGCTGCCTTCCTCCTTCCACAGCTGGAATTCATCATCAACGCCT
TTGTGGGACAGATGCGTCCACGACCAGAACGGCAACCACTACGGGAGTAA
GGCCGAGCGCAACGACATCATCGACGAGGTGGTGCGCTCCGTCTTGGACA
AATCTTCCCTCTTGCAGGTGATGGTCCGAGACCCTTATGGGAACTACGTG
GTGCAGAAGATCTTGGACATCGCTGACGACCGGCAGCAGGAGGCGCTTTG
CACTTACCTTAGGTCGTGTGCGCCCCAATTGAGGCGGTACACGTATGGGA
AGCACATATTGGTTCGGTTGGAGAAGATCAGCGGGGAGAAATTGGTTTGA
CACGGCCGTCCAAACGATCGACAGATGGTGATTAATGAGGTGAAGAGCCG
CATGCTCGTGTACTCGCAGCACAAGTTTGCCTCCAATGTGGTGGAGAAAT
GCTTGCAGGGGAACAACGTGGAGAAATTCAGCACGCACCCCTACGGCTGC
CGCGTCATCCAACGCATTCTAGAACATTGCACGGGCGCGCAGAAAAGTGC
CATTCTTGACGAGATTCGGAAGAGCTCTTCCACACTCATTCAAGATCAGT
ACGGCAACTACGTGATCCAACATGTCATGAAGACCATCCGGAATACGCTG
CCTTCCTCCTTCCACAGCTGGAATTCATCATCAACGCCTTTGTGGGACAG
ATGCGTCCACGACCAGAACGGCAACCACTACGGGAGTAAGGCCGAGCGCA
ACGACATCATCGACGAGGTGGTGCGCTCCGTCTTGGACAAATCTTCCCTC
TTGCAGGTGATGGTCCGAGACCCTTATGGGAACTACGTGGTGCAGAAGAT
CTTGGACATCGCTGACGACCGGCAGCAGGAGGCGCTTTGCACTTACCTTA
GGTCGTGTGCGCCCCAATTGAGGCGGTACACGTATGGGAAGCACATATTG
GTTCGGTTGGAGAAGATCAGCGGGGAGAAATTGGTTTGACACGGCCGTCC
AAACGATCGACAGATGGTGATTAATGAGGTGAAGAGCCGCATGCTCGTGT
ACTCGCAGCACAAGTTTGCCTCCAATGTGGTGGAGAAATGCTTGCAGGGG
AACAACGTGGAGAAATTCAGCACGCACCCCTACGGCTGCCGCGTCATCCA
ACGCATTCTAGAACATTGCACGGGCGCGCAGAAAAGTGCCATTCTTGACG
AGATTCGGAAGAGCTCTTCCACACTCATTCAAGATCAGTACGGCAACTAC
GTGATCCAACATGTCATGAAGACCATCCGGAATACGCTGCCTTCCTCCTT
CCACAGCTGGAATTCATCATCAACGCCTTTGTGGGACAGATGCGTCCACG
ACCAGAACGGCAACCACTACGGGAGTAAGGCCGAGCGCAACGACATCATC
GACGAGGTGGTGCGCTCCGTCTTGGACAAATCTTCCCTCTTGCAGGTGAT
GGTCCGAGACCCTTATGGGAACTACGTGGTGCAGAAGATCTTGGACATCG
CTGACGACCGGCAGCAGGAGGCGCTTTGCACTTACCTTAGGTCGTGTGCG
CCCCAATTGAGGCGGTACACGTATGGGAAGCACATATTGGTTCGGTTGGA
GAAGATCAGCGGGGAGAAATTGGTTTGACACGGCCGTCCAAACGATCGAC
AGATGGTGATTAATGAGGTGAAGAGCCGCATGCTCGTGTACTCGCAGCAC
AAGTTTGCCTCCAATGTGGTGGAGAAATGCTTGCAGGGGAACAACGTGGA
GAAATTCAGCACGCACCCCTACGGCTGCCGCGTCATCCAACGCATTCTAG
AACATTGCACGGGCGCGCAGAAAAGTGCCATTCTTGACGAGATTCGGAAG
AGCTCTTCCACACTCATTCAAGATCAGTACGGCAACTACGTGATCCAACA
TGTCATGAAGACCATCCGGAATACGCTGCCTTCCTCCTTCCACAGCTGGA
ATTCATCATCAACGCCTTTGTGGGACAGATGCGTCCACGACCAGAACGGC
AACCACTACGGGAGTAAGGCCGAGCGCAACGACATCATCGACGAGGTGGT
GCGCTCCGTCTTGGACAAATCTTCCCTCTTGCAGGTGATGGTCCGAGACC
CTTATGGGAACTACGTGGTGCAGAAGATCTTGGACATCGCTGACGACCGG
CAGCAGGAGGCGCTTTGCACTTACCTTAGGTCGTGTGCGCCCCAATTGAG
GCGGTACACGTATGGGAAGCACATATTGGTTCGGTTGGAGAAGATCAGCG
GGGAGAAATTGGTTTGACACGGCCGTCCAAACGATCGACAGATGGTGATT
AATGAGGTGAAGAGCCGCATGCTCGTGTACTCGCAGCACAAGTTTGCCTC
CAATGTGGTGGAGAAATGCTTGCAGGGGAACAACGTGGAGAAATTCAGCA
CGCACCCCTACGGCTGCCGCGTCATCCAACGCATTCTAGAACATTGCACG
GGCGCGCAGAAAAGTGCCATTCTTGACGAGATTCGGAAGAGCTCTTCCAC
ACTCATTCAAGATCAGTACGGCAACTACGTGATCCAACATGTCATGAAGA
CCATCCGGAATACGCTGCCTTCCTCCTTCCACAGCTGGAATTCATCATCA
ACGCCTTTGTGGGACAGATGCGTCCACGACCAGAACGGCAACCAC
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Synonyms
Publications