rna7414, rna7414 (mRNA) Nannochloropsis gaditana

Overview
Namerna7414
Unique Namerna7414
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1680
Alignment locationCM002471.1:542222..543154 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101027g2.10517.mrna
Orig protein idgnl|cribi|Naga_101027g2.10517
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:542222..543154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101027g2gene7173Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7414rna7414-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23276.1cds7397Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7414 ID=rna7414|Name=rna7414|organism=Nannochloropsis gaditana|type=mRNA|length=1680bp
GTCGCTAATGTCAGTAATGGCTTGGCAGCTACACATGGATTGACATGATA
AGTCCGAGGAATGAGGGCACGATAATCGATTTCAAGGTACAGAAGTTTTA
TACATAAGGGCACATTCATGTGAGTCGGGACCAGAGATGGGCCCGGGAGA
GGATCGAGACGACTGCAACTGGGCTACTGAGAAAGGGTTTGTTCACTATC
AAAGCACCGGACGCAATCCCTTGGCAGAAGAGAGAGTGTATGTCAAGCCT
CGTTTGTTATCGAGTTTCTTGTGCGTGTCCACCAAACATTTCGGTGCCGC
AATGTACGACGTCTGGGAGAGTAGATCACACTTGGGGGGCACGTCAGGGA
AATTTTGGAAGGGGACATGCCACGTAAGTGAGGGAATTTTCGCTTTATGC
ACGTATCTGCCACCAATATCTCCGTCAATGTGTGCTCTTATATGGCACAT
GACATGTTTTTGCTCAGTCCTTTTGTTGATTGACTCTTTTTGAGGTGTTA
TGAGCCTTAATACTCCCCTGTAACCTCCCTGTTCTCTTCTGACTCTTCTA
GGCCCGAAGCAATTTGGATGCCCTTCGTCACCGCTTCGAAACTCACCCTG
AGTGTACTCTTCTCGTCGGTGACGCGTGCCGTAACGTTTTCCTGTGTCGT
TTGTCCGCCTTTCCGTCCCCTCTCGCCCATCGTCCTTGCCATGTCTGCCG
CCTCCTCCTCCTCGAAGTCCTCCTGCTCTTCTTCCTCTTCCTTACCTTCC
GACTCTACAAGCACCTCTTGCACTTCTTATGTCCGTGCAGACGGCGTCCG
CATGAATTACGATCCATACACGCCCGAAATGCGGGCCAAATACGGAGCTC
CAGGCCGCACGGACAGTGAGGGATTCGATCCGTACAGTGATAGTGTCGGT
CCAGGCATATACGGAGGAAATGTGAAGCGGGACGCCGACGGAAAGATAGT
GGTTGGAGACCAATATCAAGGACACAATCCTCGTCCGGGCCCAGTCTACG
CCGGAGGAGGATACGCCCCTATTGTGGAGGCAATGCGCTTGGGACCCGAT
GCTTTGAACGACCTCTTAGACGCCTGTCCTGAGGCAGTGAACGAAGTGAC
CACCGGGGGGGCCACACCGTTGCACATGGCTGGCATGAGCCAGCGCAATC
AGAAAGGAACTGCCTTCTTGATCGCACGTGGAGGAGACATAGAGGCTGTC
GACACCTACGGTTATCGCCCTTTGCATCGAATGGCCAGTAACAATCTCGC
TGTAGGCGCAGCAGCACTTCTTGACGCTGGAGCTGATCCCAAAGCCCCTG
CTGGGATTAAAAGGCGTTATGCCAATGCGGGGAATAAAGGAGAGACAGAT
GTGGAAGACACGGAATCAGGAGAGACTCCCATGGATGTGGCTCGTTCGGC
CGGAGCGTGGGACGTGGTGCAACTCCTTCTGCCGTACTACACCTCAGGCT
CCCGCGCCTCTTCAGCGGGTGTCTCACAAACTTGTGACCTTCCTGGATAA
TGTCGAGGATGACAGTATTTTTTTCAATGCTCACCATTATTTGGAAAATA
TCAATGCTGTGAAGTCTGTTGTTCATTCATTTGGTTTGTTTCCTCTGTTT
TGAAATAAACATGGAAGATCTGTGTGCGCTCAATTTATGGTGTTGAGTAG
AATTCCACCGCAGTATAAATCAATGATTTC
back to top

protein sequence of rna7414

>rna7414-protein ID=rna7414-protein|Name=rna7414|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MAVSRESSRGWDVWVPKRGARQGREGIGCGRLRFRGQDALMLGPASSGLA
PVKDGQCGQCSSGRLKILHIRVCYAEASRDEGQKREGGARHGIWLRTEHA
GASTTAHFPKRRACGSMAGLCDEQRWDVLAREKVKRLPSEDWIDWAHVEM
ERRGGGSGKEGGRRGRTSRRADRMMQAGTTRMQGLNRVRKHKL
back to top

mRNA from alignment at CM002471.1:542222..543154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7414 ID=rna7414|Name=rna7414|organism=Nannochloropsis gaditana|type=mRNA|length=933bp|location=Sequence derived from alignment at CM002471.1:542222..543154- (Nannochloropsis gaditana)
ATGGCCGTGTCGCGGGAAAGTTCCAGGGGATGGGATGTGTGGGTGCCAAA
ACGCGGAGGTAGGCGCAAGGCGGAGGCGAGGTGGGTGCCCGTGGGGGCGA
AGGAGGGGTGGCTCATGGTCACGCCCGAGAGAGGAGGGGATGGTAGGGAG
GGAGGGGGGGGGGCGTACGGTGGAAGGAGTGAGAAGACCGGATAGAGGTG
GGGTGGAAGGAGGGATGGTAGGGGGACGGGGGCGTCTCTGAGTCCTCTGT
AGCGAGGCAGGGCAGGGAAGGTATCGGATGTGGAAGACTGAGGTTCCGGG
GACAGGACGCACTGATGCTAGGGCCGGCGAGCTCCGGCTTGGCACCCGTC
AAGGACGGCCAGTGCGGTCAATGTAGCAGCGGCAGGCTGAAGATCTTACA
TATACGTGTATGCTATGCAGAGGCGAGTCGTGACGAAGGGTGCTGAAAGG
GAAGGAGCTGGTGCAGGGTGGTGTCGAGGACGGGGGGAAGGTAGAGGGAC
TGAGGTTGGGCGAGGCGGAGGGCGGGTATTGGGGTGGAGGGAAAGCTTTC
TCCACGGCGCAGGCGGGGCGATTGAGGAGTAGAAGGTGAAAAACAGCCAG
AAGAGGGAAGGGGGGGCTAGGCATGGCATATGGCTACGGACTGAGCATGC
TGGGGCTTCGACGACGGCACATTTTCCCAAAAGACGGGCATGTGGGAGCA
TGGCGGGGCTTTGTGATGAGCAGAGATGGGACGTACTTGCCCGAGAAAAA
GTCAAACGACTGCCCAGTGAAGACTGGATTGACTGGGCCCATGTGGAAAT
GGAAAGGCGAGGGGGAGGGAGCGGAAAGGAGGGGGGGCGACGTGGGAGGA
CAAGTAGACGAGCGGATAGGATGATGCAGGCAGGGACAACGCGGATGCAG
GGCTTAAATCGTGTACGTAAACATAAGTTGTAG
back to top

Coding sequence (CDS) from alignment at CM002471.1:542222..543154-

>rna7414 ID=rna7414|Name=rna7414|organism=Nannochloropsis gaditana|type=CDS|length=1746bp|location=Sequence derived from alignment at CM002471.1:542222..543154- (Nannochloropsis gaditana)
CCAGAAGAGGGAAGGGGGGGCTAGGCATGGCATATGGCTACGGACTGAGC
ATGCTGGGGCTTCGACGACGGCACATTTTCCCAAAAGACGGGCATGTGGG
AGCATGGCGGGGCTTTGTGATGAGCAGAGATGGGACGTACTTGCCCGAGA
AAAAGTCAAACGACTGCCCAGTGAAGACTGGATTGACTGGGCCCATGTGG
AAATGGAAAGGCGAGGGGGAGGGAGCGGAAAGGAGGGGGGGCGACGTGGG
AGGACAAGTAGACGAGCGGATAGGATGATGCAGGCAGGGACAACGCGGAT
GCAGGGCTTAAATCGTGTACGTAAACATAAGTTGTAGCGAGGCAGGGCAG
GGAAGGTATCGGATGTGGAAGACTGAGGTTCCGGGGACAGGACGCACTGA
TGCTAGGGCCGGCGAGCTCCGGCTTGGCACCCGTCAAGGACGGCCAGTGC
GGTCAATGTAGCAGCGGCAGGCTGAAGATCTTACATATACGTGTATGCTA
TGCAGAGGCGAGTCGTGACGAAGGATGGCCGTGTCGCGGGAAAGTTCCAG
GGGATGGGATGTGTGGGTGCCAAAACGCGGAGCCAGAAGAGGGAAGGGGG
GGCTAGGCATGGCATATGGCTACGGACTGAGCATGCTGGGGCTTCGACGA
CGGCACATTTTCCCAAAAGACGGGCATGTGGGAGCATGGCGGGGCTTTGT
GATGAGCAGAGATGGGACGTACTTGCCCGAGAAAAAGTCAAACGACTGCC
CAGTGAAGACTGGATTGACTGGGCCCATGTGGAAATGGAAAGGCGAGGGG
GAGGGAGCGGAAAGGAGGGGGGGCGACGTGGGAGGACAAGTAGACGAGCG
GATAGGATGATGCAGGCAGGGACAACGCGGATGCAGGGCTTAAATCGTGT
ACGTAAACATAAGTTGTAGCGAGGCAGGGCAGGGAAGGTATCGGATGTGG
AAGACTGAGGTTCCGGGGACAGGACGCACTGATGCTAGGGCCGGCGAGCT
CCGGCTTGGCACCCGTCAAGGACGGCCAGTGCGGTCAATGTAGCAGCGGC
AGGCTGAAGATCTTACATATACGTGTATGCTATGCAGAGGCGAGTCGTGA
CGAAGGATGGCCGTGTCGCGGGAAAGTTCCAGGGGATGGGATGTGTGGGT
GCCAAAACGCGGAGCCAGAAGAGGGAAGGGGGGGCTAGGCATGGCATATG
GCTACGGACTGAGCATGCTGGGGCTTCGACGACGGCACATTTTCCCAAAA
GACGGGCATGTGGGAGCATGGCGGGGCTTTGTGATGAGCAGAGATGGGAC
GTACTTGCCCGAGAAAAAGTCAAACGACTGCCCAGTGAAGACTGGATTGA
CTGGGCCCATGTGGAAATGGAAAGGCGAGGGGGAGGGAGCGGAAAGGAGG
GGGGGCGACGTGGGAGGACAAGTAGACGAGCGGATAGGATGATGCAGGCA
GGGACAACGCGGATGCAGGGCTTAAATCGTGTACGTAAACATAAGTTGTA
GCGAGGCAGGGCAGGGAAGGTATCGGATGTGGAAGACTGAGGTTCCGGGG
ACAGGACGCACTGATGCTAGGGCCGGCGAGCTCCGGCTTGGCACCCGTCA
AGGACGGCCAGTGCGGTCAATGTAGCAGCGGCAGGCTGAAGATCTTACAT
ATACGTGTATGCTATGCAGAGGCGAGTCGTGACGAAGGATGGCCGTGTCG
CGGGAAAGTTCCAGGGGATGGGATGTGTGGGTGCCAAAACGCGGAG
back to top
Synonyms
Publications