rna7412, rna7412 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7412
Unique Name	rna7412
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3714
Alignment location	CM002471.1:532102..533225 -

Link to JBrowse

Properties


Property Name	Value
Product	fun14 family protein
Orig transcript id	gnl\|cribi\|Naga_100181g3.3855.mrna
Orig protein id	gnl\|cribi\|Naga_100181g3.3855
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:532102..533225 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100181g3	gene7171	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23280.1	cds7395	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7412	rna7412-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:532102..533225-
coding sequence from alignment at CM002471.1:532102..533225-

mRNA sequence

>rna7412 ID=rna7412|Name=rna7412|organism=Nannochloropsis gaditana|type=mRNA|length=3714bp
ATGGCATTAGACAGGGAAATTGGAGGTGGCAACGAAATGGAGGGCGAGGA
TTTGGAGGCGGCCGAGGATCTAGTGGGTGCCGACGGCAAGCTCAAGCCCT
TCCTCGTGCCTGGGGATGAGATCAAGCATCGATACAACTGCGCACGCATA
CAAGGCGTCTACTGCTACCCAGGCCTGACCCTCCTTGCCCGCAACCACCT
GTACATAATTGACAACTACAAGTTGATCGAAACCGGTGCCCTCGCAGGGC
AAGAAAAGGGCCAGGCAAATCTCACCTCTCCTTACGAAGTGGCGGAGATC
GAACCGGAGAAAGCAACCACGATCCAGACGCCACACTCCCTTGAAAATGA
GCACGGGACAACTGATTCGAGCCCTTCCGTGCCGGTATTGTGCACCCATC
GCGTAGAAATTTCTCCACGTTTGCGTGCAAAATGCGTTCCAGGCGGGGCC
CTCGGACCCCCCCACCGTTGCCACTACTTCCCATTCGAGGACGTGACAGT
AGTCTACCGGAGACGATACCACCTGCGTCACGTGGCACTGGAAATCTTTC
TGGCGAATGGCGAGAACCACTTGATCACCTTGGAAGCCCCCGAGGCCCGG
AATAACCTGTTGCAAAAGCTCAAGGCGCGGTGCAAGGAGGCTATAGCCGC
TGTGGAGAGCGCCAGGGTCTCCCCGCTCGACGAGATCCAAACTTTTCTGA
GCCTGACCACCCCTTCCACTTGGACGGAACGTTGGGTCCGTGGTGATATC
TCCAATTTCCAGTACCTGATGCATCTGAACACTCACTCCGGCCGCTCCTA
CAATGATCTGACGCAGTACCCCGTTTTCCCCTGGATCGTGGCCGACTGGG
ACTCACCCAAGTTGGATCTCACCAACCCCAACACCTTCCGAGATTTATCC
AGGCCCATGGGGGCCTTGAACCCCGCCCGTGAGATGGAGTTTCGGGAGCG
GTACGCGCTATTGAAGGAGGCGGAGCAGCCAGGGGATCCCAAGAAAGCCT
TTCATTATGGAACGCATTATTCCTCTGCAGCAATCGTTCTTTACTATCTT
GTCCGGCTTCAACCTTTCGCAGAGCAGCACGTTCGACTGCAGTCCGGGCG
TTTCGACCACTCGGATCGCCTTTTTTCTGCCTTGAAAAAATCCTGGTGTG
CCTCGTCAGGAGCTGCAGAGGGCCGAGAAAGTGGGGCATCTACCAATACC
CAAGACGTGCGGGAGCTCATTCCTGAGTTTTTCTACCTGCCCGAGATGTT
CACGAACCGAAACGGCTATGATTACGGCAAAGATTCGGAGGGGACTCACA
TCGACCACGTGGTGCTTCCCCCATGGGCAGGGGGCTCGGCCCAGGAATTC
GTTCGGCTCCACCGTCAGGCACTGGAGAGCGAGCACGTCTCACGCCACCT
GCACCACTGGATCGACCTGATTTGGGGATACAAACAACGGGGAAAGGCGG
CCGAGGAGGCCTGCAACGTCTACTACTACCTGACTTACGAGGGAGCCATG
GATTTGGAGACGGTGGAGGATCCCTCCCTCCGTGCGGCCTACGTGGAGCA
AATCCATGAGTTTGGGCAGACTCCTTCCCAGTTGTTCAAAACGCCGCATC
CTGCCCGAATTCATGTCGCATCCGGGGGAAACACCCACGAAAGAGAGGGT
TTCCCGGGAAATTCTACCGGTAATGGTGGGGCTGGGGGGGGGCTGGGGGG
TGGCAGCACTCCCCAGTGGCTGCGAAATTTGAAGCCCACGCGCAGTGGTG
GTCGCCCTGGGCCCTCTCCGCTGCCTCCTTCGATCAATACACAGCTCAGT
TTCGATGACGGACCGCGCGGCATCGGAGCAACGGCATGCCTCACAGGACA
GCCCGAACGCATTCTATCAGGCACCGGCGGCATGACCGACGCTGAGCCCT
CCAAAACCTTCGCCATCAGGGAGGCCGAGACCTCGCATTCCATTTTGAAA
CCTTACCCGTGGACGCTTTCCTTCCTCTCGCATTGGACAAAGGCTGAAGT
TCCCTGTCTTCACACGTCCGAAGCTGCCCTGAACCGGTGGCCCCCACGGC
GCCTTACTGTCGGTACCTCGGCGCCGGTGGTGCATTGGATTCAACACAAC
AGCCCACTGGACCCGTTCCACCGAGTGTTCGACCCCGTCGGCCATTTTGT
GGTCGGACAAATCCTCCCTCCCCCTCCCTCCTCCTCCCCTTCGCCTCTCT
CCGCCCCTTTGGCTCTTCACAAGGCCTGCGCCTACATCCCTGAGACCGAG
CGTTTCCTCGCCTGGGGATATGCCGACAACTGCCTCCGGGTCGGGGCTCT
GGCACCTAATGCGGCGCTACACGCTTCAAACCCGATCAACAGCGGCCTTT
CCGGTTTTGCCAAGGGTAACGCCGGTGTTGGCGTGAGTTCTCTTGCCGAG
CGCCGCTTGAGCCTCGCACTCGACTCAGCCGGTCCGATCGCGGCTTTGGC
CGTGGGGGAGGACGGGCGGACGATGGTAACGGGCAGCCGCCTTCTCCCTG
TCGTCACGGTATGGGGAATGGCGAAAGGCCTGGTTTCTGCTGCCGAGGGG
ACGGCGCTGCCACGAATGATCACACGCATGGGTGCATTGCTCTCTGCGCT
GCACGCGGGAGGGATCACGAACGTGGCCCTTAGTGCCAAGTACAGCGTGG
TTGTGAGCGTGTGCGCCTTGCATAGGGCCGTACTCCTGTGGGATTTGAAC
CGGCGCCGCCTGCTTCGAAGACTCTTGGTAATTTTCCCAGAGACCTGGGA
GGGGCAAAACGGGAAGGAGCCTGTCACCTTGTGCATCGCCGACGTGACCG
GGACCATCCTCCTCACGATGGGCACCAGCATACAGGTCTACAACGTGAAT
GGCGACCCCTTGGCCCGCTTGGACCTCCGTACAGTGCCCGTCCGAGGAGG
TTTCGCGGGGCAGCGCAGCCCTTTTTCCTCCTTGTCCACGCCCGCTTCTC
CCTGTATCGGGACAGCACAGGCCACGACTTCCACTCAAAACCTGCTCCAC
GCCCCCGCCGCCCTTATTACTGCCTCGTGCGTGGTGGGTGACGGGTCGAT
GCCGGTGACGCTTGCCACAGGGCACCAGGACGGCCGGCTCCGGCTCTGGG
TGGTGGCGTTGGAGAGGGAGGTGGAGGGAGGCAGGTCCCCGCCCATGGCC
GTGGACATGGGCCAGTGGCAGGGCGGGGGCGCGAATCGTCTGCATTTGGT
GGGAGAATTTGAGAATGACCTCCACCGGCCGCATGCTCGTGTCGGCCGGG
TGCCAGTCACGGCTCTGACGCTGACTCGCGACGCCCGCTGCCTGTACGCC
GGGGACGCGGTGGGGCGGGTGTGTGTATGGACAGCCTCCTCGACCTCGAC
CTTGGCGGCGATGGAGGGAGGCACCCCTAGCTCCAGGTCCCAGGGCATTC
GGTAAGAGACGGAAGCAGAAGAGGGAGGGTTGGAGGGAGTGGACTGCTCG
AAAGACAATGGTGGTGGGGGTTGATGGTGACGGTGGGGGCATGATGCAGA
TGGTAGGAAAACATGAAACGAGGGGGGTGAAAAAGGGACCGAAGGGGAGC
AGAGGGGGTGATAAGCTCCCGTGTGAACACGCGAGGCGAATAATGCGATG
TACATGTTGATACAAGGTGCGTGAAGGCTTGCGAAAAATGGAACAAAGAA
ATGAGCATTGATCTGACCGGGGCACTCTCTCGACTGGACGATGAAAAGAT
TTACATTCGATTCG

protein sequence of rna7412

>rna7412-protein ID=rna7412-protein|Name=rna7412|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MLRPCSLSHPGPTSLVQNHLLPQTCSRPTRLTLTSTKRVLTLRRGSRFLA
FLSFVASTTQDLRRLSSSSYCSPASRRRPLPSFPSTHLRKEEYNTRRKDS
GDGDDFIPKALGSIGGEITFNGALGFGAGYTLKKIGKMAAIFLGVAFIAS
QSLGRMGYVEVNWKKIEGEVLKFLDLDGDDKLTVKDVALYWDKMKRVLMH
NLPSTATFTAMFVLGLQKG

mRNA from alignment at CM002471.1:532102..533225-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7412 ID=rna7412|Name=rna7412|organism=Nannochloropsis gaditana|type=mRNA|length=1124bp|location=Sequence derived from alignment at CM002471.1:532102..533225- (Nannochloropsis gaditana)
CGTTTCCCCCTCAAATGACGATGCTGCAACAGAAGGATGGATAGTAGGGG
ATATATTTCCCACACGCAAAGTTACCGTCAATTTGTGAAAGCAGCGTCTT
TGCATTTTTTCGCACGACGAAGCGCTTTGCACCGAACAGTTTCTCCGAAA
CCTTCTCATGCATAATGACTCTCACTTTTTCGATCTCTCCGTTTTTCGCA
GCTTTTCAACAGGTTTTCCTTGCTTGGAAGAATGCTACGTCCCTGTTCCC
TTTCCCACCCAGGTCCTACCTCCCTTGTGCAGAATCACCTCCTGCCACAA
ACCTGCTCCCGTCCCACAAGACTCACGCTGACATCGACAAAGAGAGTCTT
GACCCTCAGACGTGGTTCACGCTTCTTGGCATTCCTCTCCTTCGTGGCCT
CTACCACTCAAGACCTCAGACGGCTCTCCTCGTCTTCCTACTGCTCTCCA
GCCTCACGCCGTCGACCCCTACCTTCCTTCCCTTCCACCCACCTCCGCAA
AGAGGAGTACAACACTCGTAGAAAGGACAGTGGCGATGGGGATGACTTTA
TCCCGAAGGCGTTGGGCTCAATAGGGGGAGAAATCACCTTCAACGGCGCT
CTCGGGTTCGGGGCTGGATATACGCTCAAAAAAATTGGGAAAATGGCAGC
GATCTTCTTAGGGGTAGCTTTTATTGCCTCCCAATCATTGGGTCGTATGG
GATATGTCGAGGTCAACTGGAAAAAAATCGAAGGCGAAGTTTTGAAGTTT
CTGGATCTGGACGGAGACGACAAATTAACCGTGAAGGATGTCGCGCTGTA
CTGGGACAAAATGAAGAGAGTGCTCATGCATAATCTACCGTCCACCGCGA
CCTTCACGGCAATGTTTGTGCTGGGCCTTCAAAAAGGCTAGAGGTGGGAA
GTGGGAAGGGGACGGAGGAGGGAAACGGCTGAGAAATGATGAGTGTGGAG
TGTATGGATATCGCGTTGGGGAGCTGTGAGATGACGGCCAGCGTTCCGAA
GCATAATGCCAGCGTTTGCGAAATCAACAGACTGCCTTGAGCAACATCCT
CGATCTCGGGTGCGTCGCCCACCCCGTGCATGCGCTGTAAAGTCGAATCG
AATGTAAATCTTTTCATCGTCCAG

Coding sequence (CDS) from alignment at CM002471.1:532102..533225-

>rna7412 ID=rna7412|Name=rna7412|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at CM002471.1:532102..533225- (Nannochloropsis gaditana)
ATGCTACGTCCCTGTTCCCTTTCCCACCCAGGTCCTACCTCCCTTGTGCA
GAATCACCTCCTGCCACAAACCTGCTCCCGTCCCACAAGACTCACGCTGA
CATCGACAAAGAGAGTCTTGACCCTCAGACGTGGTTCACGCTTCTTGGCA
TTCCTCTCCTTCGTGGCCTCTACCACTCAAGACCTCAGACGGCTCTCCTC
GTCTTCCTACTGCTCTCCAGCCTCACGCCGTCGACCCCTACCTTCCTTCC
CTTCCACCCACCTCCGCAAAGAGGAGTACAACACTCGTAGAAAGGACAGT
GGCGATGGGGATGACTTTATCCCGAAGGCGTTGGGCTCAATAGGGGGAGA
AATCACCTTCAACGGCGCTCTCGGGTTCGGGGCTGGATATACGCTCAAAA
AAATTGGGAAAATGGCAGCGATCTTCTTAGGGGTAGCTTTTATTGCCTCC
CAATCATTGGGTCGTATGGGATATGTCGAGGTCAACTGGAAAAAAATCGA
AGGCGAAGTTTTGAAGTTTCTGGATCTGGACGGAGACGACAAATTAACCG
TGAAGGATGTCGCGCTGTACTGGGACAAAATGAAGAGAGTGCTCATGCAT
AATCTACCGTCCACCGCGACCTTCACGGCAATGTTTGTGCTGGGCCTTCA
AAAAGGCTAG

Synonyms

Publications