rna7410, rna7410 (mRNA) Nannochloropsis gaditana

Overview
Namerna7410
Unique Namerna7410
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1874
Alignment locationCM002471.1:515924..517123 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100181g5.3856.mrna
Orig protein idgnl|cribi|Naga_100181g5.3856
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:515924..517123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100181g5gene7169Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7410rna7410-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23281.1cds7393Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7410 ID=rna7410|Name=rna7410|organism=Nannochloropsis gaditana|type=mRNA|length=1874bp
ATGCGCCTTTACGCCCATGTTGCCCGTCGATTGATGGAGGAGAGAGGCTC
CCTCGGCGAGGACGAGAAGGAACGATCGCAGGCTGAGGGCACCGCGGCGA
CTTCCTTCCCTACCTCTTCCCCGCCCTCCTTCCCTCCCTACCTGCAAAAA
TGGCTGGAAACGTACGCAAGCACCGAATTTGAGGCAAGTGCTCTGGCAAC
AGAATCGCTATTGGATTCCGAAGTTGAAAAGGAGAAGGTAAAGAGGAGGA
ATAATCGAAGAAAGAAGCACCATGAAGGGCAAGGGAAGGGAGGGAAGGAG
GACGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAACGGCGTTTATTCGCCCTGTACGGAGAAGCCATGG
AGCTGGAATACGCCTTTTTTGCGGAGCAATGGCAGGAATCGCAGGAGTGG
CGCGGCCTCGATCCTTCCGTCCTCATCACGGACTTCGACGGCACCTGCAC
CCTGGCAGACACCACGCACCTTCTGGCGCGCGCCGCGGGGCACTTCCAGA
GCCCTGCTTCCACGGCAGAGCAGTGGAGGCGGTTGGAAGAGGGCTACCTC
TCTCAGCTCTCCGGCGTCCTTGACCCCCTCCTGACGGGTCTTCCTCCCTC
CGTCCCTCCCTCCCTGCCTCCCTCCCAGCCCGAGGCGAAGGACCTGGGTG
GGGCCGCTGCCTTCTTGGCCCCCCTGGATGCCTTCGATATCAAGGCAGTG
GCGGCGGTCAGTGACTCCCGGATTCTCAAGGGGATCGACCTCTCTCTCCT
TCCCGCCCTCCTCACCTCGTCCTCCCCAATGCCTTCTTTTTCGCCCCCCC
CCTCCTCCCTTCCTTCCTCCTTTGCTGCTGCCCTCGCCCTCCGTCCTTAC
TGCGCCACCACCCTTCGCTACGCCGCCGACCGCTCCTCGTCGCCTTCTTC
CTCCTCTCTCTTCCACGTCCTCTCCGTCTCGTGGTCGTCATTCCTCATCA
CTGCCGCCACCGGGCTCAGCCCCGCCAAGGTCACTTGCAACCACCTCGTG
GAGGAGGTAGGATCAGACGGCCGCCTTCTTACCACCGGGGCAATCGAGGT
GAAGGTAGGAGGTCCGGGGGGGAAACTCGGCCATTTCCAGCGTTTGCTGC
AAGGCGCGGAGGCTGGACCCGAGGGAGGAGGGCAGAAAGGGCGTGGACGG
TCGTCCCCGTCGGTGTTTATCGGAGATTCGGTTACGGATGTGTTGGCGTT
GATGGCAGCAGATGTAGGGATTGTGGTGGGTGAATCTGGGACTTTGAGAC
GGATGCTGCGAAGATTTGGATGGAAGATTCGGGGGCTAGTCGCATTTCCT
GTCAAGAAAGAGGAAAGGGGCAAAGCCAGCCGGGTCGTCTACGCGGCCGA
GGATTGGGCGGAAATTGCAGCTTTTTTGTATGGGACGGATTTAGTGAAGA
AGATGGTGGAGGAGGGAAGAAGGAATAAGGGCAATACTTATTGCGGAGAA
TGAGTGGAGTCATCTCACGGTAGACACGGGATCAATGGGAGAAATGCCGC
ATGTGTTACTCGTGACTAATCGTACCAAAAAAAGTATTTTAAAAACAGCC
TGTGAATTATTTTTCTGGGTATGTTTTTTCTTATGCTGTCTGCAGTATGT
TTTAAAATATGTATGATTACATCTTTACATGCCTTTTTGTGCTGTGTCGC
ATTTTACCTTAAAAGCTTGTAGTAGCTTCCAAAATTAACCTCCCGCCCGG
CCGCGTTTTTTCAGTTACCCTCTTGTACGGTGCTGCCGCTTGTCCCCGTG
ATGAGCGTTGGAAAACGTGTTTAAAAGGCCTACAGTGTCTGGTTGTATAC
GGCGTGATGCTTGCAACGATGCGG
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protein sequence of rna7410

>rna7410-protein ID=rna7410-protein|Name=rna7410|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MPKTNVASKRRARARASNEPYAKFPNACSTQVVLPDPKRPELAGTGLQKP
SRHHKMLRRMAFLKSIEENAAAASVEMAAGIEKADRRKKTTGHGDEAMQR
GLNGTEMRVNSPFLGQENKAATGSPGATFAMTSTKRHEQRVSNTIKTNAA
RQRVAAEEIERLKMVTSHPAFKAGPHAAIRDHLRTRIAEGK
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mRNA from alignment at CM002471.1:515924..517123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7410 ID=rna7410|Name=rna7410|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp|location=Sequence derived from alignment at CM002471.1:515924..517123+ (Nannochloropsis gaditana)
CATCAATTAATAAATCGCATGTTtcgcttcttctcttctaTCAACATGAA
AAGATATTAGGATGCCTAAAACCAATGTTGCAAGCAAACGGCGTGCCCGC
GCTCGAGCGTCCAATGAACCGTACGCGAAATTTCCGAATGCCTGTTCTAC
GCAAGTTGTCTTGCCAGACCCGAAGCGTCCAGAGCTAGCAGGGACAGGCC
TCCAAAAACCGTCACGACATCACAAAATGCTTCGTAGAATGGCATTTCTA
AAAAGCATAGAAGAAAATGCGGCGGCCGCGTCGGTGGAAATGGCGGCTGG
GATCGAGAAAGCTGAccgaaggaagaagaccacAGGACATGGGGATGAAG
CAATGCAGAGAGGTCTAAACGGCACAGAAATGCGTGTAAATTCACCATTT
TTGGGGCAGGAGAACAAGGTACAGTAGTCGTTGATTATTAAGAGCACATT
ATGTTGTGTTGAGTGGGCCAATATCGAAACATGAAGCCCTGCTGGCGACT
TTAAAATGCCTTATCTCGCAGACTCTTAATTATGTCTCTACTGTTGTCCT
ATATGCTTGACATTGACAGGCAGCGACCGGATCACCTGGAGCAACATTTG
CGATGACATCGACAAAGAGGCATGAACAGAGGGTGTCAAATACCATCAAG
ACGAACGCAGCCAGGCAACGGGTCGCGGCAGaagaggtgagggaaagacg
TTACCCATTGCCACTTAAATATGTACTGCTGCAAATTTCTTCTTCGTCAC
TCTGTTTTGTAGCTATCTTTTTCGGATCCCAAGCTGCCTGTCGGTGTGAG
ACACTGTCGATTTACTCCTTCACCGCGTTCTCCACCTTACTATTAGCAac
ttcccctctttccatgCACGCTATTTTCCTTCTCATATCCTTATTCTCTG
CTTCTGTTTTTCCAACAGATTGAACGTTTGAAGATGGTGACCTCGCACCC
CGCTTTCAAGGCCGGTCCACATGCCGCCATCCGTGACCATCTGCGTACCC
GGATAGCGGAGGGAAAATAAGTGGGGCAGGGAAAAACCCAATGGAAAATG
CAGCCTGAGAGAGAGTAGATAAATTGAAAAGCAGGCATAAACTACAAAGC
AAAGAAAGCAAAGACAGCGATGGTACGTATGATTGCAATATCGTGCTCTG
CACGGAATATTCGCCTGTCACTTGATCTTTACTACCATTTATTGCTACCT
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Coding sequence (CDS) from alignment at CM002471.1:515924..517123+

>rna7410 ID=rna7410|Name=rna7410|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at CM002471.1:515924..517123+ (Nannochloropsis gaditana)
ATGCCTAAAACCAATGTTGCAAGCAAACGGCGTGCCCGCGCTCGAGCGTC
CAATGAACCGTACGCGAAATTTCCGAATGCCTGTTCTACGCAAGTTGTCT
TGCCAGACCCGAAGCGTCCAGAGCTAGCAGGGACAGGCCTCCAAAAACCG
TCACGACATCACAAAATGCTTCGTAGAATGGCATTTCTAAAAAGCATAGA
AGAAAATGCGGCGGCCGCGTCGGTGGAAATGGCGGCTGGGATCGAGAAAG
CTGAccgaaggaagaagaccacAGGACATGGGGATGAAGCAATGCAGAGA
GGTCTAAACGGCACAGAAATGCGTGTAAATTCACCATTTTTGGGGCAGGA
GAACAAGGCAGCGACCGGATCACCTGGAGCAACATTTGCGATGACATCGA
CAAAGAGGCATGAACAGAGGGTGTCAAATACCATCAAGACGAACGCAGCC
AGGCAACGGGTCGCGGCAGaagagATTGAACGTTTGAAGATGGTGACCTC
GCACCCCGCTTTCAAGGCCGGTCCACATGCCGCCATCCGTGACCATCTGC
GTACCCGGATAGCGGAGGGAAAATAAATGCCTAAAACCAATGTTGCAAGC
AAACGGCGTGCCCGCGCTCGAGCGTCCAATGAACCGTACGCGAAATTTCC
GAATGCCTGTTCTACGCAAGTTGTCTTGCCAGACCCGAAGCGTCCAGAGC
TAGCAGGGACAGGCCTCCAAAAACCGTCACGACATCACAAAATGCTTCGT
AGAATGGCATTTCTAAAAAGCATAGAAGAAAATGCGGCGGCCGCGTCGGT
GGAAATGGCGGCTGGGATCGAGAAAGCTGAccgaaggaagaagaccacAG
GACATGGGGATGAAGCAATGCAGAGAGGTCTAAACGGCACAGAAATGCGT
GTAAATTCACCATTTTTGGGGCAGGAGAACAAGGCAGCGACCGGATCACC
TGGAGCAACATTTGCGATGACATCGACAAAGAGGCATGAACAGAGGGTGT
CAAATACCATCAAGACGAACGCAGCCAGGCAACGGGTCGCGGCAGaagag
ATTGAACGTTTGAAGATGGTGACCTCGCACCCCGCTTTCAAGGCCGGTCC
ACATGCCGCCATCCGTGACCATCTGCGTACCCGGATAGCGGAGGGAAAAT
AAATGCCTAAAACCAATGTTGCAAGCAAACGGCGTGCCCGCGCTCGAGCG
TCCAATGAACCGTACGCGAAATTTCCGAATGCCTGTTCTACGCAAGTTGT
CTTGCCAGACCCGAAGCGTCCAGAGCTAGCAGGGACAGGCCTCCAAAAAC
CGTCACGACATCACAAAATGCTTCGTAGAATGGCATTTCTAAAAAGCATA
GAAGAAAATGCGGCGGCCGCGTCGGTGGAAATGGCGGCTGGGATCGAGAA
AGCTGAccgaaggaagaagaccacAGGACATGGGGATGAAGCAATGCAGA
GAGGTCTAAACGGCACAGAAATGCGTGTAAATTCACCATTTTTGGGGCAG
GAGAACAAGGCAGCGACCGGATCACCTGGAGCAACATTTGCGATGACATC
GACAAAGAGGCATGAACAGAGGGTGTCAAATACCATCAAGACGAACGCAG
CCAGGCAACGGGTCGCGGCAGaagagATTGAACGTTTGAAGATGGTGACC
TCGCACCCCGCTTTCAAGGCCGGTCCACATGCCGCCATCCGTGACCATCT
GCGTACCCGGATAGCGGAGGGAAAATAA
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Synonyms
Publications