rna7403, rna7403 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7403
Unique Name	rna7403
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3490
Alignment location	CM002471.1:497235..498107 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100158g6.7792.mrna
Orig protein id	gnl\|cribi\|Naga_100158g6.7792
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:497235..498107 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g6	gene7162	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7403	rna7403-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23296.1	cds7386	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:497235..498107+
coding sequence from alignment at CM002471.1:497235..498107+

mRNA sequence

>rna7403 ID=rna7403|Name=rna7403|organism=Nannochloropsis gaditana|type=mRNA|length=3490bp
TTTGTAAGAAGTGAGCCCCGCACAGTGGCGATTCCTGGAGCACTTTCAAA
AAGATTATTTTTCTATCTTTGTATTCTTGAATATCATTTTTTTCATATGC
ATGGTATATTTTGTGACAGGATGGGCCCGCATGGCTAAGTAGTCTTAAGC
TGTGTTTTATGCTCCATGTGACAAGTACCCTCATTCTCTTTTAAACCACC
TTGTCATGGACACGATGCACTTTGTTCTGATCACACCACCGAAATATCCA
GCCCTCCTGAAGGTGAACTCTAACCCTGAAGGTCAACTTTCATTCTCTTA
CATTTAACAATGACATCCCCTCGTGTGAAAATCAGCACCATAAGTGCCCT
CTTATGTATAAAAATTCATCGCCTTCTATCTCCCCTCGTTCTTTTCGACA
TAGCTACTGTTATACCACCGGCACTGCCCTTACTCTTGAAGCTTCAAAAA
ATTTCCGCCATGTCCGTATTCGATCACATCGCTCGTCCCTTAGGATGTAA
CAATTCTTCCAATTCTTGAATTTTCCAAATGCCGCGGCGAACCGGAGAAA
ATAGAGCGACCGCCAAATCTCTTGGCAGTCCAGCTCGTACTTAAATGGGC
GACCCACAACTGTAACGGCCCGAAGCTCACGGGAGCGTACATAATGGAAT
ATCTGGTCGTGAAGGTCATAGGAAGAGGAGGAGGTAAAAAAAGGGATGAG
AATGAATATTCTACCCCAGAAATAATAGGAAAGCAGCATAAGATTTATCA
AGGGCCATTTTTCAGTGTTTACATATAAGCAGCAATGTCAGGTGAGTTGT
CTTCCTGTCAAAATCGGTCTCTCCCATTAATGCCTGAGCATCACCCCTTT
ACGCCCCTGCACCTGCTCGAGAAGCTCAGGACAAGCCACAGCTATTTCGG
ATAGATAAGAAGCCGGATGTTGGGGAGGCAAAAAAAAGGGGATCTTTGTT
TGACGGTGGTGGCAAGCTCTGTAGGATCGATGTTGGAATAGAAAAGACCA
ATCAACGAGACAGAACAGGAAGTAAAAAAGATAAACCTTTCTTCTGACTT
ACGCGCCATTTTGAGAGGAAACAGGATAATAGCTGTCGATTAATGCCGCG
GACTCCGCATTGCCAGGCAAGACCCGCGATCCTCCTGCGGAAGTTGCATT
GTCCCTAGTGTTGGCCCCCACGAACCATCGAGCAGGCGGACGACGACGCG
ACAAGAGGCGCCATTGCAAGAGACGGGCCCGAACAAGCATGGAACGTTTC
AATTTCTCGACCTCTCGGACTCGACTCATCATGATATGGAGGATTTCTAT
GTTTCCGCAGCCGAAATATAGATTTTTACACTGCCCTGCTTCTCGTTCTG
TCTCGTGCTCTATCTGTCCTCCAGATCAAGACCCCCGCACTGGCAACCCA
ACAGGGTACCTGTGATGTATGTATTCTTAAAGTGAGTGGTGTCATGGAAT
TGATCATGTCGCTGTACAGTTTGGAAGGGGGGTTGTCATGCCCCTGTGGC
ACGACTTGGGATAGTTACAACTGGCAAATGCCAACTCCAGCCGCCCTGTC
TCTCGAGTAATTTGATGCAGCGAACAGAACGGGAAATGAATATATACAAG
CCAACGTCCCATGTTGACCATCTCTAGCTCTTGCTTAACACATATTGAGA
ACAGAATGTTCTGGCCAATGCCGGACAAGGATACTTGGAGTGACACGCAC
CCCCCGCATCGGAGTTGAACCCTTGACTCAAAGCAGTGGGGGTAATACCG
TTTTCGAATAGTTTTCCTGCAGGCTGCGACGTCTTCAAAGGTCTTGTGTG
CAAGTCTTGAGCAAAGTAATTTCCTTTATTTTGTTAACCTGTGCCGGGAC
GTGTCAATTCCCGATTCCCCTTATACTCGCAGACGCGGCGAATCGCTTTC
TGTACAAGAACACAGGAACCCGTCTCCCATGAATACCCAGGACACGCCGA
TATCGACTTCAAAGCCGCCACTTTGCGCTCCTTCTGGTACACAGACATGT
GCCGCGGAAAAAGATACCGAGCCAAGTATTGTGGCTGTGGAAGAGGACGC
AGAGTCTCTTCTGTTGGGGTGGGATGCAGTAGAAGGGGCGGTGTTCTACG
AGCTTCAGATGCTGAAGCAGGCAGTCAAGTCTATAGGAGGCGAAGAGGAT
AGTCAGGCCGAAGACTGGAATGCTGCCAGGGCCATGGAAGAGCCTGGACT
TACGGATCATGGTGACGCTGTGGGAGAATGGTGCACGCTTTCCGCATCCC
TGAAGAGCAACATGGTCCGAAAGAGAAACCTCTCTCACTCCACCCCTTAC
CGCTTCCGCGTCCGCGTCCGCGACAAAGTGGATTGGCTGCCGTTCCAGAC
TTCCTCCCTCCTCCACACTCTCTCCACGTTTGTGCAACGAATGGCGGCCC
CGCGGGGAGAGGTGGGCGGGGCAGCAGGGTGTGTCACCCTGTCCTGGGAG
CCTGTGGAGGAGGCAGCGGCCTACGCCGTCCACATGCGCGAGCAGGGGGC
AGTCAGATGGAAGGAGGTGGGGAGGGTAGGCGGCACGAGCGTGAAGAAGA
AGAATCTGGAGGCAGGAAAAGCCTACCACTTCCGAGTCAGGCCGGTGGGG
GAGAGAGTGGAAGACGTCTGGGTGTGGAGCCCGTGGAGTGAGGCCATGAG
TCCTCCCTCGCTTCCACCCGTCCTTCGGCGCATGTTTGGTTCGCGCCTGG
CGGTAGAAGTGGGGAAAGAGGGAAAAAAGGAGATTGGGGTGGAGTCACTG
GCGGGTAGTGTTGTGGGTGTGTACGCCTCGGCCCATTGGTGTGCTCCTTG
CCGTCAGTTTACTCCGCAATTGGCCAATTTTTACCGCGGCCTGCAAGGCG
CTGGGAAAGCTTTTGAGATTGTTTTTGTTTCGCTAGACCAGGAAAAAGAA
GCTTTCGAATTATACTTCGAAAGCATGCCTTGGCTGGCAATTCCGTGGGA
GGGAGGGGAGGGAGAGAGGGAGGCATTGATGCGTATGTATCAGATAACAT
CCGTTCCGCGATTGTTGATATTTGGGAGGGATGGAGAATTGCTGGAGAAC
AATGCGGTAGGGTCACAATTTTTGAGAGAAGAGGCATTTCATTCTTGGTG
GGAGGGGAGACCGTTCAGAGCAGGGGGAGGTGGATGTTGTGGAGGTGGAG
GATGCAAGTAGAAGAAGCGGGCGGTAGGGGAGGTGATTTCTGGAGGTAGA
CGCAATGCCTCCTAGACATGTTGACCCATATGTTTGCCTCTACAGAATAG
GGTGTTGAGTTAAAGCATTCGATGAACAAACTAGATAGATCGTACTTGAT
TCGCTGCCTGTTCGTCTCAAGAGAAGAGTTTACATGGGCCTCGGCCCCAA
TGCAGGGAAAGTAAAATACCAGTGGTCGCACAAAAATGTGCCCCAAACAC
TTCCCAAGAATGTTTTGCGTCGGGACGTTAGGACATTTTAGCTAAATCGC
ATGCACGTGCGGGGTGCTACCAACCATGCTGTCTCCTCAT

protein sequence of rna7403

>rna7403-protein ID=rna7403-protein|Name=rna7403|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MMSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVGANTRDNATSAG
GSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLS
EIAVACPELLEQIFHYVRSRELRAVTVVGRPFKYELDCQEIWRSLYFLRF
AAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAVPVV

mRNA from alignment at CM002471.1:497235..498107+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7403 ID=rna7403|Name=rna7403|organism=Nannochloropsis gaditana|type=mRNA|length=873bp|location=Sequence derived from alignment at CM002471.1:497235..498107+ (Nannochloropsis gaditana)
ATGATGAGTCGAGTCCGAGAGGTCGAGAAATTGAAACGTTCCATGCTTGT
TCGGGCCCGTCTCTTGCAATGGCGCCTCTTGTCGCGTCGTCGTCCGCCTG
CTCGATGGTTCGTGGGGGCCAACACTAGGGACAATGCAACTTCCGCAGGA
GGATCGCGGGTCTTGCCTGGCAATGCGGAGTCCGCGGCATTAATCGACAG
CTATTATCCTGTTTCCTCTCAAAATGGCGCGTAAGTCAGAAGAAAGGTTT
ATCTTTTTTACTTCCTGTTCTGTCTCGTTGATTGGTCTTTTCTATTCCAA
CATCGATCCTACAGAGCTTGCCACCACCGTCAAACAAAGATCCCCTTTTT
TTTGCCTCCCCAACATCCGGCTTCTTATCTATCCGAAATAGCTGTGGCTT
GTCCTGAGCTTCTCGAGCAGGTGCAGGGGCGTAAAGGGGTGATGCTCAGG
CATTAATGGGAGAGACCGATTTTGACAGGAAGACAACTCACCTGACATTG
CTGCTTATATGTAAACACTGAAAAATGGCCCTTGATAAATCTTATGCTGC
TTTCCTATTATTTCTGGGGTAGAATATTCATTCTCATCCCTTtttttacc
tcctcctcttcctatGACCTTCACGACCAGATATTCCATTATGTACGCTC
CCGTGAGCTTCGGGCCGTTACAGTTGTGGGTCGCCCATTTAAGTACGAGC
TGGACTGCCAAGAGATTTGGCGGTCGCTCTATTTTCTCCGGTTCGCCGCG
GCATTTGGAAAATTCAAGAATTGGAAGAATTGTTACATCCTAAGGGACGA
GCGATGTGATCGAATACGGACATGGCGGAAATTTTTTGAAGCTTCAAGAG
TAAGGGCAGTGCCGGTGGTATAA

Coding sequence (CDS) from alignment at CM002471.1:497235..498107+

>rna7403 ID=rna7403|Name=rna7403|organism=Nannochloropsis gaditana|type=CDS|length=1737bp|location=Sequence derived from alignment at CM002471.1:497235..498107+ (Nannochloropsis gaditana)
ATGATGAGTCGAGTCCGAGAGGTCGAGAAATTGAAACGTTCCATGCTTGT
TCGGGCCCGTCTCTTGCAATGGCGCCTCTTGTCGCGTCGTCGTCCGCCTG
CTCGATGGTTCGTGGGGGCCAACACTAGGGACAATGCAACTTCCGCAGGA
GGATCGCGGGTCTTGCCTGGCAATGCGGAGTCCGCGGCATTAATCGACAG
CTATTATCCTGTTTCCTCTCAAAATGGCGCAGCTTGCCACCACCGTCAAA
CAAAGATCCCCTTTTTTTTGCCTCCCCAACATCCGGCTTCTTATCTATCC
GAAATAGCTGTGGCTTGTCCTGAGCTTCTCGAGCAGATATTCCATTATGT
ACGCTCCCGTGAGCTTCGGGCCGTTACAGTTGTGGGTCGCCCATTTAAGT
ACGAGCTGGACTGCCAAGAGATTTGGCGGTCGCTCTATTTTCTCCGGTTC
GCCGCGGCATTTGGAAAATTCAAGAATTGGAAGAATTGTTACATCCTAAG
GGACGAGCGATGTGATCGAATACGGACATGGCGGAAATTTTTTGAAGCTT
CAAGAGTAAGGGCAGTGCCGGTGGTATAAATGATGAGTCGAGTCCGAGAG
GTCGAGAAATTGAAACGTTCCATGCTTGTTCGGGCCCGTCTCTTGCAATG
GCGCCTCTTGTCGCGTCGTCGTCCGCCTGCTCGATGGTTCGTGGGGGCCA
ACACTAGGGACAATGCAACTTCCGCAGGAGGATCGCGGGTCTTGCCTGGC
AATGCGGAGTCCGCGGCATTAATCGACAGCTATTATCCTGTTTCCTCTCA
AAATGGCGCAGCTTGCCACCACCGTCAAACAAAGATCCCCTTTTTTTTGC
CTCCCCAACATCCGGCTTCTTATCTATCCGAAATAGCTGTGGCTTGTCCT
GAGCTTCTCGAGCAGATATTCCATTATGTACGCTCCCGTGAGCTTCGGGC
CGTTACAGTTGTGGGTCGCCCATTTAAGTACGAGCTGGACTGCCAAGAGA
TTTGGCGGTCGCTCTATTTTCTCCGGTTCGCCGCGGCATTTGGAAAATTC
AAGAATTGGAAGAATTGTTACATCCTAAGGGACGAGCGATGTGATCGAAT
ACGGACATGGCGGAAATTTTTTGAAGCTTCAAGAGTAAGGGCAGTGCCGG
TGGTATAAATGATGAGTCGAGTCCGAGAGGTCGAGAAATTGAAACGTTCC
ATGCTTGTTCGGGCCCGTCTCTTGCAATGGCGCCTCTTGTCGCGTCGTCG
TCCGCCTGCTCGATGGTTCGTGGGGGCCAACACTAGGGACAATGCAACTT
CCGCAGGAGGATCGCGGGTCTTGCCTGGCAATGCGGAGTCCGCGGCATTA
ATCGACAGCTATTATCCTGTTTCCTCTCAAAATGGCGCAGCTTGCCACCA
CCGTCAAACAAAGATCCCCTTTTTTTTGCCTCCCCAACATCCGGCTTCTT
ATCTATCCGAAATAGCTGTGGCTTGTCCTGAGCTTCTCGAGCAGATATTC
CATTATGTACGCTCCCGTGAGCTTCGGGCCGTTACAGTTGTGGGTCGCCC
ATTTAAGTACGAGCTGGACTGCCAAGAGATTTGGCGGTCGCTCTATTTTC
TCCGGTTCGCCGCGGCATTTGGAAAATTCAAGAATTGGAAGAATTGTTAC
ATCCTAAGGGACGAGCGATGTGATCGAATACGGACATGGCGGAAATTTTT
TGAAGCTTCAAGAGTAAGGGCAGTGCCGGTGGTATAA

Synonyms

Publications