EWM23296.1, cds7386 (CDS) Nannochloropsis gaditana

Overview
NameEWM23296.1
Unique Namecds7386
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:497235..497464 +
Alignment locationCM002471.1:497549..497654 +
Alignment locationCM002471.1:497865..498107 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23296.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100158g6.7792.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:497235..497464 +
CM002471.1supercontigCM002471.1:497549..497654 +
CM002471.1supercontigCM002471.1:497865..498107 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Homology
[Close]
BLAST of EWM23296.1 vs. NCBI_GenBank
Match: gi|585104301|gb|EWM23296.1| (hypothetical protein Naga_100158g6 [Nannochloropsis gaditana])

HSP 1 Score: 395.586 bits (1015), Expect = 1.756e-139
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 
Query:    1 MMSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVGANTRDNATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLEQIFHYVRSRELRAVTVVGRPFKYELDCQEIWRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAVPVV 192
            MMSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVGANTRDNATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLEQIFHYVRSRELRAVTVVGRPFKYELDCQEIWRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAVPVV
Sbjct:    1 MMSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVGANTRDNATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLEQIFHYVRSRELRAVTVVGRPFKYELDCQEIWRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAVPVV 192
[Close]
BLAST of EWM23296.1 vs. NCBI_GenBank
Match: gi|553188993|ref|XP_005854909.1| (hypothetical protein NGA_0392600 [Nannochloropsis gaditana CCMP526] >gi|422294153|gb|EKU21453.1| hypothetical protein NGA_0392600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 392.119 bits (1006), Expect = 4.725e-138
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0 
Query:    1 MMSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVGANTRDNATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLEQIFHYVRSRELRAVTVVGRPFKYELDCQEIWRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAVPVV 192
            MMSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVGANTRDNATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLEQIFHYVRSRELRAVTVVGRPFKYELDCQE+WRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAV VV
Sbjct:    1 MMSRVREVEKLKRSMLVRARLLQWRLLSRRRPPARWFVGANTRDNATSAGGSRVLPGNAESAALIDSYYPVSSQNGAACHHRQTKIPFFLPPQHPASYLSEIAVACPELLEQIFHYVRSRELRAVTVVGRPFKYELDCQELWRSLYFLRFAAAFGKFKNWKNCYILRDERCDRIRTWRKFFEASRVRAVSVV 192
The following BLAST results are available for this feature:
BLAST of EWM23296.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104301|gb|EWM23296.1|1.756e-139100.00hypothetical protein Naga_100158g6 [Nannochloropsi... [more]
gi|553188993|ref|XP_005854909.1|4.725e-13898.96hypothetical protein NGA_0392600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7403rna7403Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications