rna7401, rna7401 (mRNA) Nannochloropsis gaditana

Overview
Namerna7401
Unique Namerna7401
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1414
Alignment locationCM002471.1:493111..494669 -

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Properties
Property NameValue
Productatp-dependent clp protease proteolytic subunit
Orig transcript idgnl|cribi|Naga_100158g8.7788.mrna
Orig protein idgnl|cribi|Naga_100158g8.7788
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:493111..494669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100158g8gene7160Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7401rna7401-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23292.1cds7384Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7401 ID=rna7401|Name=rna7401|organism=Nannochloropsis gaditana|type=mRNA|length=1414bp
AGCAGAAAGATCCTCACGTGACCCTCGGCTGCCGCAGTCCCAGCCATGGT
AGCTCCTCCTCATTGTTTCCCAGCTTTCTTCATAGCCATCTCCCGTCTGT
ACACATACCTTCTTGATATGCAACGGATACAGGACTGGAGACCGCCTGTT
GGAGACTGTATCTCAGGAGACTTTTCCTAGGGCTAGTTCAGAAAGACCCT
GAAAGTTGCGAGAACACAAGCCCCTTCCTGACATGGGGAGGGAAAAGCAA
CACAACCCCATCCCGCTACTCTTCCTCCTCCTCGTCGCCACATCTTTCCC
TGCTGTTTTCGCCTTTGTCGTACCCTCCATCCCATCGGGACGGGACTCTT
ACATCCTCCGCACTCCAATGTTTGTCGCCTCAAAGCTCCCTTCCAGCTCC
GCGTCAGGGAGTCGACAAGCAGCTTTTGGGGCTTTGCTCGCGCGAAAACA
GAGAACGTTGGCAGAGGAATTGGACGATTTACGACTGGACGAATCGACCA
TGAGCGCGGAGGAAAAAAAGAGGTTGCAAGGGCTGCGAGCTTCTTATAAA
CTGGAGGACGTGCTGGACTTCGACGGCACAAACGCTGAGCCCCTTCCCTC
CGCCCCTGCCTCCCCCGCCCAGGCGGACCCGGACTACGACCCCCTCGACG
ACGCCGAGGACCTGGCCGTGGCCGAGACCGCCTGGTCGGGTCAAGCGGGC
CTGGACGTTCGGCGGGTGGGCGAAAACAATTGGAAGGACGTGGGCGCCCG
GCCTCTCTTGGCACTGGGGGACGTGCTCATGTTCCTGCTCTTCGCCAGCG
TCGGTCGCTCCATTCACACGGGCGGACTCTCACTCGACGTCCAGGTGGTG
CAGACGGCCGCTCCCTTTATCCTGGCCTGGTTGGGCCTGGCGCCTCTCCT
GGGCGCCTACACGCCCGAGGCCTCCCGGTCCACAGGCAACGCAGTGAAGA
CGGTGCTGAAGGCGTGGGCACTGGCCGTGCCCGGTGGGCTTGTGGGGAGG
GGCTTGCTGAAGGGGGAAGTGCCCCCTGTGCCATTCATGGCGGTGACGAT
GGTTACCACGCTGGTGCTTCTGACCGCGTGGCGGGTGGCAGTGGTGGCGG
TGGCGGGGGGAGAGGTGGAAGGGGGGGAGGGGAACAAACGGAGCGGGTTG
TTCGACGTCTTCAAGATGGTCACCACTCTGATTGGACGTTGGTGAGCAAA
AGGCGAAAGAGCGGATCAGAGTATCTCGGTGGACAAAGGTTTAAGCAGAC
TCAACCGTTAGTTACAGCCCTCCAACTGTGCAACATGTGCCACGTGCCGC
TTGGCTAAGTACATCGTGCTTATTTTTCTTTTTGGTAAGACCCGCGAGCG
GCGATGCCCCAGTGTCTCTCTCACCCTAGCTCCACGCTTGCGGCGCGAAT
TGCGGTTGGTACCT
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protein sequence of rna7401

>rna7401-protein ID=rna7401-protein|Name=rna7401|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MTQLFLLLLSCLFRIFMAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIM
SSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPA
VPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNE
DKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLC
AAGTHGRRFALPNSRFLMQKTGFEEVREKKRC
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mRNA from alignment at CM002471.1:493111..494669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7401 ID=rna7401|Name=rna7401|organism=Nannochloropsis gaditana|type=mRNA|length=1559bp|location=Sequence derived from alignment at CM002471.1:493111..494669- (Nannochloropsis gaditana)
ATTCTATCCCATGTATTGTGGACGTGCAGGGGTTCAACGCCGTTCTTGTC
TCTGCTCTTCATTATGACACAGCTTTTTTTGCTCTTGCTTTCTTGCCTCT
TCAGGATATTCATGGCATTTTCTGGGACCACAAGACCTGCCCCTTCCTGC
GCTTTCACGACGGCCAAGGTGGCGACGCCGCTCCTGCTACTCGTGCATGC
TCTCTATATTATGTCCTCCCTTGGGGTCGGCGCCTTTGTCTTGCCCACAT
CCACCGGCATTTCCACCTCCAGAACACCTATGACGATTCAGCCCCGAGCC
CGGACAGACCTGGCTCACAAGCCTCGGAGCAACGTGGTGATGATGCCGGC
CTCCGAGCCCGCCGTGCCATATAAGGCACCAGGGACAGGTAAGAAGGCCT
AGATATTCGGTGCTGCAGCATCATTCTACATAAATGTATATGCCAGTGGA
ATATATTAGCTTGGTCTTCATGTTTGGTTTCGCTCGTGTGCGTATTGAGT
GGATTGAGAGGGGATTGACGTGTTGCTTTCTTTCAATTCCGGTCTAGATT
ATCATAGGTATGTTGGCATTTATCAACGACTGTACTACGATCGCGTTCTG
CTTTGCGGACAGTTCATCGACGATCGAGTGGCGAATCAGATCATGTCGAT
TCTCTGGTACCTGCACAACGAGGACAAGCACAAGCCTATTTACATGTACT
TCAACGTGCCAGGGGCCATGCTACGACCTGCTCTGAGCGTCTTCGACACA
ATGCAAGCGATGAGCAATGAGATAGAGACGATCAATATCGGTCTCACCAC
GGGCATGGGCGGCTTTCTCTGCGCGGCCGGGACGCACGGGAGAAGGTTTG
CCCTGCCGAACTCGAGATTTTTAATGCAGAAGACGGGCTTCGAGGAGGTG
AGAGAGAAAAAGAGGTGTTGAGGGCTTGCGGGCACTTTCTTGGGACGGTG
ATGGGTCACTGATGTACACTCTTCCTTCTCCCATCTTTCAGCAAGTGTAC
GGCCAGGCTAGTGACATCATTTTGGAGGTGGAGAGCACCGTCAGGGAGAA
TCAACGTTTTTTAAAGGAGCTCGCGCGCTTGACCGGGCGAGCCCCTGAGA
CTATCGTCGACGACTTTGCTCGCGACTTTTACCTGTCCGCAGAGGAGAGT
GTGGAGTACGGCATGGTGGACCAGGTGATCATACCCGGACATAAGGACGC
GTTGGCAGTGACGGACGGAGAGGTGGGCTTCGGGCGCTTTGTGTCCGGGA
GTGATCAAAGGTACCAACCGCAATTCGCGCCGCAAGCGTGGAGCTAGGGT
GAGAGAGACACTGGGGCATCGCCGCTCGCGGGTCTTACCAAAAAGAAAAA
TAAGCACGATGTACTTAGCCAAGCGGCACGTGGCACATGTTGCACAGTTG
GAGGGCTGTAACTAACGGTTGAGTCTGCTTAAACCTTTGTCCACCGAGAT
ACTCTGATCCGCTCTTTCGCCTTTTGCTCACCAACGTCCAATCAGAGTGG
TGACCATCTTGAAGACGTCGAACAACCCGCTCCGTTTGTTCCCCTCCCCC
CCTTCCACC
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Coding sequence (CDS) from alignment at CM002471.1:493111..494669-

>rna7401 ID=rna7401|Name=rna7401|organism=Nannochloropsis gaditana|type=CDS|length=1398bp|location=Sequence derived from alignment at CM002471.1:493111..494669- (Nannochloropsis gaditana)
ATTATCATAGGTATGTTGGCATTTATCAACGACTGTACTACGATCGCGTT
CTGCTTTGCGGACAGTTCATCGACGATCGAGTGGCGAATCAGATCATGTC
GATTCTCTGGTACCTGCACAACGAGGACAAGCACAAGCCTATTTACATGT
ACTTCAACGTGCCAGGGGCCATGCTACGACCTGCTCTGAGCGTCTTCGAC
ACAATGCAAGCGATGAGCAATGAGATAGAGACGATCAATATCGGTCTCAC
CACGGGCATGGGCGGCTTTCTCTGCGCGGCCGGGACGCACGGGAGAAGGT
TTGCCCTGCCGAACTCGAGATTTTTAATGCAGAAGACGGGCTTCGAGGAG
GTGAGAGAGAAAAAGAGGTGTTGAATGACACAGCTTTTTTTGCTCTTGCT
TTCTTGCCTCTTCAGGATATTCATGGCATTTTCTGGGACCACAAGACCTG
CCCCTTCCTGCGCTTTCACGACGGCCAAGGTGGCGACGCCGCTCCTGCTA
CTCGTGCATGCTCTCTATATTATGTCCTCCCTTGGGGTCGGCGCCTTTGT
CTTGCCCACATCCACCGGCATTTCCACCTCCAGAACACCTATGACGATTC
AGCCCCGAGCCCGGACAGACCTGGCTCACAAGCCTCGGAGCAACGTGGTG
ATGATGCCGGCCTCCGAGCCCGCCGTGCCATATAAGGCACCAGGGACAGA
TTATCATAGGTATGTTGGCATTTATCAACGACTGTACTACGATCGCGTTC
TGCTTTGCGGACAGTTCATCGACGATCGAGTGGCGAATCAGATCATGTCG
ATTCTCTGGTACCTGCACAACGAGGACAAGCACAAGCCTATTTACATGTA
CTTCAACGTGCCAGGGGCCATGCTACGACCTGCTCTGAGCGTCTTCGACA
CAATGCAAGCGATGAGCAATGAGATAGAGACGATCAATATCGGTCTCACC
ACGGGCATGGGCGGCTTTCTCTGCGCGGCCGGGACGCACGGGAGAAGGTT
TGCCCTGCCGAACTCGAGATTTTTAATGCAGAAGACGGGCTTCGAGGAGG
TGAGAGAGAAAAAGAGGTGTTGAATGACACAGCTTTTTTTGCTCTTGCTT
TCTTGCCTCTTCAGGATATTCATGGCATTTTCTGGGACCACAAGACCTGC
CCCTTCCTGCGCTTTCACGACGGCCAAGGTGGCGACGCCGCTCCTGCTAC
TCGTGCATGCTCTCTATATTATGTCCTCCCTTGGGGTCGGCGCCTTTGTC
TTGCCCACATCCACCGGCATTTCCACCTCCAGAACACCTATGACGATTCA
GCCCCGAGCCCGGACAGACCTGGCTCACAAGCCTCGGAGCAACGTGGTGA
TGATGCCGGCCTCCGAGCCCGCCGTGCCATATAAGGCACCAGGGACAG
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Synonyms
Publications