EWM23292.1, cds7384 (CDS) Nannochloropsis gaditana

Overview
NameEWM23292.1
Unique Namecds7384
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:494282..494606 -
Alignment locationCM002471.1:493749..494122 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23292.1
Productatp-dependent clp protease proteolytic subunit
Orig transcript idgnl|cribi|Naga_100158g8.7788.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:494282..494606 -
CM002471.1supercontigCM002471.1:493749..494122 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR023562ClpP/TepA
IPR029045ClpP/crotonase-like_dom
IPR001907ClpP
Homology
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|585104297|gb|EWM23292.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 484.182 bits (1245), Expect = 4.052e-173
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MTQLFLLLLSCLFRIFMAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEVREKKRC 232
            MTQLFLLLLSCLFRIFMAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEVREKKRC
Sbjct:    1 MTQLFLLLLSCLFRIFMAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEVREKKRC 232          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|553188997|ref|XP_005854910.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526] >gi|422294154|gb|EKU21454.1| atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 439.499 bits (1129), Expect = 3.367e-154
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
Query:   17 MAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
            MAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE
Sbjct:    1 MAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 209          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|873235239|emb|CEM00799.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 167.933 bits (424), Expect = 2.608e-48
Identity = 73/133 (54.89%), Postives = 101/133 (75.94%), Query Frame = 0
Query:   93 MMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
            MMP++ P VPYK PG+D++ +V +  RL  DRV+  G+F+D+  ANQI++ L YL +ED  +PI +Y NVPGA+++P+L+++D M  +   I T+N+GL TGMG FLCAAGT G+RF LPN+RFLMQKTG EE
Sbjct:    1 MMPSTTPQVPYKPPGSDFYTWVDLNTRLLRDRVIFVGRFLDEEAANQIIATLLYLRSEDSTRPISLYMNVPGALMKPSLAIYDAMIGVECPISTLNLGLATGMGAFLCAAGTPGQRFCLPNARFLMQKTGMEE 133          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|676383121|ref|XP_009034839.1| (hypothetical protein AURANDRAFT_58799 [Aureococcus anophagefferens] >gi|323454123|gb|EGB09993.1| hypothetical protein AURANDRAFT_58799 [Aureococcus anophagefferens])

HSP 1 Score: 166.007 bits (419), Expect = 1.479e-47
Identity = 70/126 (55.56%), Postives = 98/126 (77.78%), Query Frame = 0
Query:  100 AVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
            +VPY+ PG+D H +V IYQRLY DR++L G F+D+  AN ++++L YL  ED  KPI +YFNVPGA+++P L+V+DT+Q +   + T+N+GL TGMG FLC AGT G R+ALPN+RFLMQ+TG ++
Sbjct:   33 SVPYQPPGSDSHMFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDD 158          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|219118446|ref|XP_002179995.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408252|gb|EEC48186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 164.081 bits (414), Expect = 5.273e-46
Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 0
Query:   88 RSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEV 226
            R   + MP+  P VPY  PG DY +++ I   +Y DR L    FID+  AN ++SI+ YL NE    PI MYFNVPGA+LRP+L+++D +Q      EIET+N+GL  GMG FLC+AGT G+R A+PNSRFL+Q+TG +EV
Sbjct:   46 RRETIRMPSQSPQVPYMPPGADYAQFIDIEAAMYRDRTLFISTFIDEETANSLISIMLYLRNESPKDPISMYFNVPGALLRPSLALYDLIQQTKQKCEIETVNLGLCAGMGAFLCSAGTKGKRNAMPNSRFLLQRTGMDEV 186          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|1210527080|dbj|GAX14210.1| (hypothetical protein FisN_20Hh167 [Fistulifera solaris])

HSP 1 Score: 162.925 bits (411), Expect = 2.222e-45
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 0
Query:   90 NVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEV 226
            + + MP++ P VP+K PG+DY +++ I   +Y DR +   ++IDD+ AN I+SI+ YL NE    PI MYFNVPGA LRPAL+++D MQ      EI+T+N+ LT GMG  LCAAGT G+R ALPN+RFL+ +TG ++V
Sbjct:   49 DTIQMPSTTPMVPFKPPGSDYAQFIDIESAMYRDRTMFIAKYIDDQAANSIISIMLYLRNESPRSPISMYFNVPGANLRPALAIYDLMQNTKKNCEIQTVNLALTAGMGSILCAAGTKGQRSALPNARFLLHRTGMDQV 187          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|1210512011|dbj|GAX28866.1| (hypothetical protein FisN_20Lh167 [Fistulifera solaris])

HSP 1 Score: 162.54 bits (410), Expect = 2.706e-45
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 0
Query:   90 NVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEV 226
            + + MP++ P VP+K PG+DY +++ I   +Y DR +   ++IDD+ AN I+SI+ YL NE    PI MYFNVPGA LRPAL+++D MQ      EI+T+N+ LT GMG  LCAAGT G+R ALPN+RFL+ +TG ++V
Sbjct:   51 DTIQMPSTTPMVPFKPPGSDYAQFIDIESAMYRDRTMFISKYIDDQAANSIISIMLYLRNESPRSPISMYFNVPGANLRPALAIYDLMQNTKKNCEIQTVNLALTAGMGSILCAAGTKGQRSALPNARFLLHRTGMDQV 189          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|1072232469|gb|OEU17200.1| (CLP_protease-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 161.77 bits (408), Expect = 9.076e-45
Identity = 68/140 (48.57%), Postives = 102/140 (72.86%), Query Frame = 0
Query:   88 RSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
            R + + MP+  P VP+  PG+DY +++ I   +Y DR L+  +FID+  AN+I+SIL ++  +D +K I +YFNVPGA+LRP+L+++D ++      EIET+N+GL TGMG FLCAAGT G+R A+PNSRFL+Q+ G ++
Sbjct:   65 RRDTIKMPSQTPMVPWTPPGSDYAQFMDINSAMYRDRTLMISRFIDEEAANEIISILLWMRQQDSYKTISIYFNVPGALLRPSLAIYDLIEQTKQTCEIETVNLGLCTGMGSFLCAAGTKGKRSAMPNSRFLLQRMGLDQ 204          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|298707068|emb|CBJ29870.1| (ATP-dependent Clp protease proteolytic subunit [Ectocarpus siliculosus])

HSP 1 Score: 147.902 bits (372), Expect = 2.451e-40
Identity = 67/132 (50.76%), Postives = 95/132 (71.97%), Query Frame = 0
Query:   94 MPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
            MP+SEP VPY   G+    ++ + Q L   R+++ G+FID+  ANQ++++L Y    D +K I +YFN PGA++RPAL+V+DT+  M  E+ T+N+GL TGM  FLCAAG  G+R+ALPNSRFLMQ+TG E+
Sbjct:    1 MPSSEPMVPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMED 132          
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|546309067|ref|XP_005713906.1| (unnamed protein product [Chondrus crispus] >gi|507110317|emb|CDF34087.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 148.288 bits (373), Expect = 2.467e-40
Identity = 70/154 (45.45%), Postives = 93/154 (60.39%), Query Frame = 0
Query:   66 ISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQ 219
            +S  R+P  I P         PR   V M    P VPYKAPG   H ++ I+ RLY +R++  GQ +DD  ANQI+++L YL N+D    + MYFN PG  +   L+V+D M+AM   + T+N+GL   MG FL  AGT G+R ALPNSRFL+Q
Sbjct:   27 VSAQRSPRRIPP--------APRVAPVCMAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTVPAGLAVYDCMRAMKYPVTTLNLGLAASMGAFLVGAGTKGKRMALPNSRFLLQ 172          
The following BLAST results are available for this feature:
BLAST of EWM23292.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104297|gb|EWM23292.1|4.052e-173100.00atp-dependent clp protease proteolytic subunit [Na... [more]
gi|553188997|ref|XP_005854910.1|3.367e-154100.00atp-dependent clp protease proteolytic subunit [Na... [more]
gi|873235239|emb|CEM00799.1|2.608e-4854.89unnamed protein product [Vitrella brassicaformis C... [more]
gi|676383121|ref|XP_009034839.1|1.479e-4755.56hypothetical protein AURANDRAFT_58799 [Aureococcus... [more]
gi|219118446|ref|XP_002179995.1|5.273e-4651.77predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210527080|dbj|GAX14210.1|2.222e-4551.08hypothetical protein FisN_20Hh167 [Fistulifera sol... [more]
gi|1210512011|dbj|GAX28866.1|2.706e-4551.08hypothetical protein FisN_20Lh167 [Fistulifera sol... [more]
gi|1072232469|gb|OEU17200.1|9.076e-4548.57CLP_protease-domain-containing protein [Fragilario... [more]
gi|298707068|emb|CBJ29870.1|2.451e-4050.76ATP-dependent Clp protease proteolytic subunit [Ec... [more]
gi|546309067|ref|XP_005713906.1|2.467e-4045.45unnamed protein product [Chondrus crispus] >gi|507... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7401rna7401Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications