EWM23292.1, cds7384 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|585104297|gb|EWM23292.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana]) HSP 1 Score: 484.182 bits (1245), Expect = 4.052e-173 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query: 1 MTQLFLLLLSCLFRIFMAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEVREKKRC 232
MTQLFLLLLSCLFRIFMAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEVREKKRC
Sbjct: 1 MTQLFLLLLSCLFRIFMAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEVREKKRC 232
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|553188997|ref|XP_005854910.1| (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526] >gi|422294154|gb|EKU21454.1| atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 439.499 bits (1129), Expect = 3.367e-154 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
Query: 17 MAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
MAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE
Sbjct: 1 MAFSGTTRPAPSCAFTTAKVATPLLLLVHALYIMSSLGVGAFVLPTSTGISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 209
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|873235239|emb|CEM00799.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 167.933 bits (424), Expect = 2.608e-48 Identity = 73/133 (54.89%), Postives = 101/133 (75.94%), Query Frame = 0
Query: 93 MMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
MMP++ P VPYK PG+D++ +V + RL DRV+ G+F+D+ ANQI++ L YL +ED +PI +Y NVPGA+++P+L+++D M + I T+N+GL TGMG FLCAAGT G+RF LPN+RFLMQKTG EE
Sbjct: 1 MMPSTTPQVPYKPPGSDFYTWVDLNTRLLRDRVIFVGRFLDEEAANQIIATLLYLRSEDSTRPISLYMNVPGALMKPSLAIYDAMIGVECPISTLNLGLATGMGAFLCAAGTPGQRFCLPNARFLMQKTGMEE 133
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|676383121|ref|XP_009034839.1| (hypothetical protein AURANDRAFT_58799 [Aureococcus anophagefferens] >gi|323454123|gb|EGB09993.1| hypothetical protein AURANDRAFT_58799 [Aureococcus anophagefferens]) HSP 1 Score: 166.007 bits (419), Expect = 1.479e-47 Identity = 70/126 (55.56%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 100 AVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
+VPY+ PG+D H +V IYQRLY DR++L G F+D+ AN ++++L YL ED KPI +YFNVPGA+++P L+V+DT+Q + + T+N+GL TGMG FLC AGT G R+ALPN+RFLMQ+TG ++
Sbjct: 33 SVPYQPPGSDSHMFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDD 158
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|219118446|ref|XP_002179995.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408252|gb|EEC48186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 164.081 bits (414), Expect = 5.273e-46 Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 0
Query: 88 RSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEV 226
R + MP+ P VPY PG DY +++ I +Y DR L FID+ AN ++SI+ YL NE PI MYFNVPGA+LRP+L+++D +Q EIET+N+GL GMG FLC+AGT G+R A+PNSRFL+Q+TG +EV
Sbjct: 46 RRETIRMPSQSPQVPYMPPGADYAQFIDIEAAMYRDRTLFISTFIDEETANSLISIMLYLRNESPKDPISMYFNVPGALLRPSLALYDLIQQTKQKCEIETVNLGLCAGMGAFLCSAGTKGKRNAMPNSRFLLQRTGMDEV 186
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|1210527080|dbj|GAX14210.1| (hypothetical protein FisN_20Hh167 [Fistulifera solaris]) HSP 1 Score: 162.925 bits (411), Expect = 2.222e-45 Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 0
Query: 90 NVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEV 226
+ + MP++ P VP+K PG+DY +++ I +Y DR + ++IDD+ AN I+SI+ YL NE PI MYFNVPGA LRPAL+++D MQ EI+T+N+ LT GMG LCAAGT G+R ALPN+RFL+ +TG ++V
Sbjct: 49 DTIQMPSTTPMVPFKPPGSDYAQFIDIESAMYRDRTMFIAKYIDDQAANSIISIMLYLRNESPRSPISMYFNVPGANLRPALAIYDLMQNTKKNCEIQTVNLALTAGMGSILCAAGTKGQRSALPNARFLLHRTGMDQV 187
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|1210512011|dbj|GAX28866.1| (hypothetical protein FisN_20Lh167 [Fistulifera solaris]) HSP 1 Score: 162.54 bits (410), Expect = 2.706e-45 Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 0
Query: 90 NVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEEV 226
+ + MP++ P VP+K PG+DY +++ I +Y DR + ++IDD+ AN I+SI+ YL NE PI MYFNVPGA LRPAL+++D MQ EI+T+N+ LT GMG LCAAGT G+R ALPN+RFL+ +TG ++V
Sbjct: 51 DTIQMPSTTPMVPFKPPGSDYAQFIDIESAMYRDRTMFISKYIDDQAANSIISIMLYLRNESPRSPISMYFNVPGANLRPALAIYDLMQNTKKNCEIQTVNLALTAGMGSILCAAGTKGQRSALPNARFLLHRTGMDQV 189
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|1072232469|gb|OEU17200.1| (CLP_protease-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 161.77 bits (408), Expect = 9.076e-45 Identity = 68/140 (48.57%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 88 RSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSN--EIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
R + + MP+ P VP+ PG+DY +++ I +Y DR L+ +FID+ AN+I+SIL ++ +D +K I +YFNVPGA+LRP+L+++D ++ EIET+N+GL TGMG FLCAAGT G+R A+PNSRFL+Q+ G ++
Sbjct: 65 RRDTIKMPSQTPMVPWTPPGSDYAQFMDINSAMYRDRTLMISRFIDEEAANEIISILLWMRQQDSYKTISIYFNVPGALLRPSLAIYDLIEQTKQTCEIETVNLGLCTGMGSFLCAAGTKGKRSAMPNSRFLLQRMGLDQ 204
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|298707068|emb|CBJ29870.1| (ATP-dependent Clp protease proteolytic subunit [Ectocarpus siliculosus]) HSP 1 Score: 147.902 bits (372), Expect = 2.451e-40 Identity = 67/132 (50.76%), Postives = 95/132 (71.97%), Query Frame = 0
Query: 94 MPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQKTGFEE 225
MP+SEP VPY G+ ++ + Q L R+++ G+FID+ ANQ++++L Y D +K I +YFN PGA++RPAL+V+DT+ M E+ T+N+GL TGM FLCAAG G+R+ALPNSRFLMQ+TG E+
Sbjct: 1 MPSSEPMVPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMED 132
BLAST of EWM23292.1 vs. NCBI_GenBank
Match: gi|546309067|ref|XP_005713906.1| (unnamed protein product [Chondrus crispus] >gi|507110317|emb|CDF34087.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 148.288 bits (373), Expect = 2.467e-40 Identity = 70/154 (45.45%), Postives = 93/154 (60.39%), Query Frame = 0
Query: 66 ISTSRTPMTIQPRARTDLAHKPRSNVVMMPASEPAVPYKAPGTDYHRYVGIYQRLYYDRVLLCGQFIDDRVANQIMSILWYLHNEDKHKPIYMYFNVPGAMLRPALSVFDTMQAMSNEIETINIGLTTGMGGFLCAAGTHGRRFALPNSRFLMQ 219
+S R+P I P PR V M P VPYKAPG H ++ I+ RLY +R++ GQ +DD ANQI+++L YL N+D + MYFN PG + L+V+D M+AM + T+N+GL MG FL AGT G+R ALPNSRFL+Q
Sbjct: 27 VSAQRSPRRIPP--------APRVAPVCMAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTVPAGLAVYDCMRAMKYPVTTLNLGLAASMGAFLVGAGTKGKRMALPNSRFLLQ 172 The following BLAST results are available for this feature:
BLAST of EWM23292.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|