rna7400, rna7400 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7400
Unique Name	rna7400
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2782
Alignment location	CM002471.1:491730..493411 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF3054
Orig transcript id	gnl\|cribi\|Naga_100158g9.7794.mrna
Orig protein id	gnl\|cribi\|Naga_100158g9.7794
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:491730..493411 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g9	gene7159	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7400	rna7400-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23298.1	cds7383	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:491730..493411+
coding sequence from alignment at CM002471.1:491730..493411+

mRNA sequence

>rna7400 ID=rna7400|Name=rna7400|organism=Nannochloropsis gaditana|type=mRNA|length=2782bp
GTGTTTCTTTTTGGCTCCGAGGCAGATACAGAGCAAAGACGTGGCGGTCA
CTCACACCCCTCCTTGTTTTTTCACCAGGGACGCAGTCGAAGAACACAAC
CATCGCGCTTCGTGCCGTCGGCCAAACAATTATGGCACCGTTTGGGGACA
ATAAGCGCCACGAGTCCCAGACAATCCTTCCTAATCACAGGCGGCGGACG
AGCTGGACTGTATTGTTTGACGGCGCAGTACCCCACGTGAGTCTCTTCAT
GGGGTTTCGAGAGCATCTTATGATGGCTTCGACTTGTCACACCTTCTACG
CCCGGTGGCCTATACAATCAAAAATATTAAAAATGGGCGTATACCTGCAT
CGTACCTCGGTCCCCGTGGCCTCAACGCCTCTCAGGGAAATAAACTGCCA
ACTACACCGTGATAGGGCAGGAGGCAGCATATGGCGCGAAAATGGAAGCT
CCCATGACTTGAAATGGAGAAGCCTCTCTCGCGTACTACAGCATTGGTCT
CACATTGAGACTCTACGTTTCTCTGGTTGCATTAGCGGTCCTCAAGAATA
TTTTTTTCAGGAAGCCCTAGTGGAGTTGCCTGCATCGACTCTACAAAAGC
AGCAGTACCATAGGTCTCAGCGACAGAAAAACGTGTCGTTAAGCGCAGGA
AACGAGAAGCCGTACACCTTTATGACACGTTCCATGCTGCCACAGCTTAA
AGAGCTGGTCTTTTCCAGGATTGGCCTCTCGCCTGCAAACGCCTCCTCCA
TGGCTGCAATCCTGGTCGGCCCCCTCGGGTCCCGCCTGGTCGATTTAGAC
CTCTCGCATAACCCCTTAAAAGACGAAGGATTTCACACCATCTTCAAATC
GCTGGCTGCCAGCATGCCGGAGCCCCCTGGCTCCGGCCCACGGCGTCGCC
GGTCCTCGTCCTCCACTGCTCACGGTCTCTCTGCCCTCCAAAGCCTGGAC
CTGTCGCACACGCACCTTACCCACACCGGCCTCGGCTCCTTCCTCCTAGC
CTTACGGAAAGGGTGTGTGTCGAACCTGCTTGTGCTTATGCTAGGGGGAA
ACCCTCTCAAAGAGGAGGGCGGACTCGTCTTGACGGCCATCCTGGAGGGT
CACCACCTCCCTCGCCTCCGCACCCTCGACGCGAGTGCATGCGGCATGGG
CCCTCTGGCCACCAGGACTTTGCTCTCAGCGGGGATGGGCGGCGGGATGG
CAGCTTTGAAGAGCCTGAACGTAGGGAGTAACTACGTAGACTCGGAGGGC
GTGCGGGCCCTGGCCCTGGTCATGCGCCTGGGAAAACTCTCCCGCTTGGA
CCATCTGAAGGTGGATTTAAGTGGTGAGAATGCGCTCTCACTGCTAGCAG
CAGGTTGGAACCGAGACGGAGGGGCAGGTTGGGAGGGAGAGAGGGAAGGA
CAGGCAGGGGGAGATTTGGAAAAGGAGGGTTGCCCCCCGCTACGGCGTCT
CGACTTGGAGAAGAATGCGTCCCTGTACGGACAGGGATGGGCCGAGGTGG
TGGAGGGAGGGAGGGAAGGAGGGCTCCCGGCCAGCTTGGAGGCGTTGAAT
CTGGCGCACTGTAAGCGGTTGGGCGAGAAGGGCTTGGCAGGCGTGTTGGC
CTGGGGTCGCATGCACGGGCCGGGACGGCATGAAAGCCGACTTACCTGCT
TGGATTTGAGCGAAACAAGCCTAGACGGAGACAATGTCCGAACGCAGCAG
CATTTACGGGAGTTGTGGGAAGTCTTTCCCGGTTTGACACATTTAAATTT
GCGCGGGAATCGTCTTGGGTGGGCGGGAGGGAGGGCTCTAGCCGAGGGGC
TGGCCTCGTCGCGGACGGGCGGAGGGGCCAAGGCCAATGCTCTGGTGGTG
TTGGACGTGGCAGGGACCGCGCTGGGTGACGAGGGGGCTTCCTCCCTGTT
GCAGGCTCTTCCCAGGTGTGCCTGTTTGCGGGAGCTCTTCTTCGCCAACA
ACGACCTGAGTCCCTCCTTTTGGCGGGAAGGGCGGGCAGTGGAGATGCTG
GGGGGTGGAAACATGGAAGCCTTGCGGGTCTTGGACATTAGCAAGAACGC
TCTCGGCCCCGGTTTCCTCCCTTCTCAGGACTCCCACGCCTTGTCAGCCT
TGCTGGCTCGTCTGCACGTCTTGAAGATGGCATGGACGGATGCGGGGCCT
GAGGATGTGGCCGCATTGATTGCAGGATTCAAGGGCGGAGTGGCCGGTGG
AGAGGAGGAGAAACTTTCCGGCGTGCCTTTGACGGTCCTGGACCTGGCCT
ACAACACCCGCATGGGGGAGACGGAGGTGTTGCGGCTGCTGGAATTCTCT
CTCAGCCCTCGAATGGGCCGTCTCCGCGCCCTCTCCCTGGTGGGGACGGG
GATGGGGGATGCGGTTGTCACGGCCTTGACAGGACTGCTGACATTGGACA
GGGTGCTGGCGTGCGAGCATTTGGAGACGGTGGAGCTCCGAGGCAACGAC
GGCATCAGCAAGGGCTGTCGTCAGCAGCTTCTCGGACACTTGGCTCGTCT
TCACAATCGGTTGGCTGAGGAGGCTGTATGGGGACATTCACGACGACTTC
AATCGCTGGTTCGCATATAGATTTTAAAGCAATTAGCTTTATGAGGGTGG
TGTGAAGAGGTAATGCATCGTCATAATCCAAAGCCGCGCTCAGAGTAGAA
TTCCACGGATAGGGAAATACAGGGTGTGAAACATCAAGTGCTTCGTTGTC
AGATGGGGCAAAACAAACGTACAACAGCGAGCAGCAAAATTTACGAGTCA
GAGCTTGATTTTCCCTCGCTAGTCAGTCTTTT

protein sequence of rna7400

>rna7400-protein ID=rna7400-protein|Name=rna7400|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MGREKQHNPIPLLFLLLVATSFPAVFAFVVPSIPSGRDSYILRTPMFVAS
KLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQG
LRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETA
WSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLS
LDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVP
GGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEG
NKRSGLFDVFKMVTTLIGRW

mRNA from alignment at CM002471.1:491730..493411+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7400 ID=rna7400|Name=rna7400|organism=Nannochloropsis gaditana|type=mRNA|length=1682bp|location=Sequence derived from alignment at CM002471.1:491730..493411+ (Nannochloropsis gaditana)
agcagaaAGATCCTCACGTGACCCTCGGCTGCCGCAGTCCCAGCCATGGt
agctcctcctcattgtTTCCCAGCTTTCTTCATAGCCATCTCCCGTCTGT
ACACATACCTTCTTGATATGCAACGGATACAGGACTGGAGACCGCCTGTT
GGAGACTGTATCTCAGGAGACTTTTCCTAGGGCTAGTTCAGAAAGACCCT
GAAAGTTGCGAGAACACAAGCCCCTTCCTgacatggggagggaaaagcaa
cACAACCCCATCCCGctactcttcctcctcctcgtcgccacATCTTTCCC
TGCTGTTTTCGCCTTTGTCGTACCCTCCATCCCATCGGGACGGGACTCTT
ACATCCTCCGCACTCCAATGTTTGTCGCCTCAAAGCTCCCTTCCAGCTCC
GCGTCAGGGAGTCGACAAGCAGCTTTTGGGGCTTTGCTCGCGCGAAAACA
GAGAACGTTGGCAGAGGAATTGGACGATTTACGACTGGACGAATCGACCA
TGAGcgcggaggaaaaaaagaggttGCAAGGGCTGCGAGCTTCTTATAAA
ctggaggacgtgctggaCTTCGACGGCACAAACGCTGAGGTAAGTGACCT
GCAGAGATGGGATGGGGATGGAAAATGAAATACGACTGTACTGGACAATC
TACctacaaagaggaagaagcaaccGATTATTTTGGAAGGCGGAAGGTTG
AAACCGCCTTCGCATCCAATGACCCGGCAGCACTCGTTTTGAATGCCATT
CCAGCACATGAAGTGGTACTGCACGCACCTTACCACCTGTCCATCCGCCC
CTCTGAGGAAAACTCACACCATCTcgtttcccccgccccctcttctccgg
gCTtcagccccttccctccgcccctgcctcccccgcccaggcGGACCCGG
ACTACGACCCCCTCGACGACGCCGAGgacctggccgtggccgagACCGCC
TGGTCGGGTCAAGCGGGCCTGGACGTTCGGCGGGTGGGCGAAAACAATTG
GAAGGACGTGGGCGCCCGGCCTCTCTTGGCACTGGGGGACGTGCTCATGT
TCCTGCTCTTCGCCAGCGTCGGTCGCTCCATTCACACGGGCGGACTCTCA
CTCGACGTCCAGGTGGTGCAGACGGCCGCTCCCTTTATCCTGGCCTGGTT
GGGCCTGGCGCCTCTCCTGGGCGCCTACACGCCCGAggcctcccggtcca
caggCAACGCAGTGAAGACGGTGCTGAAGGCGTGGGCACTGGCCGTGCCC
GGTGGGCTTGTGGGGAGGGGCTTGCTGAAGGGGGAAGTGCCCCCTGTGCC
ATTCATGGCGGTGACGATGGTTACCACGCTGGTGCTTCTGACCGCGTGGC
GGGTGGcagtggtggcggtggcggggggagaggtggaagggggggagggg
aacaaaCGGAGCGGGTTGTTCGACGTCTTCAAGATGGTCACCACTCTGAT
TGGACGTTGGTGAGCAAAAGGCGAAAGAGCGGATCAGAGTATCTCGGTGG
ACAAAGGTTTAAGCAGACTCAACCGTTAGTTACAGCCCTCCAACTGTGCA
ACATGTGCCACGTGCCGCTTGGCTAAGTACATCGTGcttatttttctttt
tggtAAGACCCGCGAGCGGCGATGCCCCAGTGTCTCTCTCACCCTAGCTC
CACGCTTGCGGCGCGAATTGCGGTTGGTACCT

Coding sequence (CDS) from alignment at CM002471.1:491730..493411+

>rna7400 ID=rna7400|Name=rna7400|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at CM002471.1:491730..493411+ (Nannochloropsis gaditana)
atggggagggaaaagcaacACAACCCCATCCCGctactcttcctcctcct
cgtcgccacATCTTTCCCTGCTGTTTTCGCCTTTGTCGTACCCTCCATCC
CATCGGGACGGGACTCTTACATCCTCCGCACTCCAATGTTTGTCGCCTCA
AAGCTCCCTTCCAGCTCCGCGTCAGGGAGTCGACAAGCAGCTTTTGGGGC
TTTGCTCGCGCGAAAACAGAGAACGTTGGCAGAGGAATTGGACGATTTAC
GACTGGACGAATCGACCATGAGcgcggaggaaaaaaagaggttGCAAGGG
CTGCGAGCTTCTTATAAActggaggacgtgctggaCTTCGACGGCACAAA
CGCTGAGccccttccctccgcccctgcctcccccgcccaggcGGACCCGG
ACTACGACCCCCTCGACGACGCCGAGgacctggccgtggccgagACCGCC
TGGTCGGGTCAAGCGGGCCTGGACGTTCGGCGGGTGGGCGAAAACAATTG
GAAGGACGTGGGCGCCCGGCCTCTCTTGGCACTGGGGGACGTGCTCATGT
TCCTGCTCTTCGCCAGCGTCGGTCGCTCCATTCACACGGGCGGACTCTCA
CTCGACGTCCAGGTGGTGCAGACGGCCGCTCCCTTTATCCTGGCCTGGTT
GGGCCTGGCGCCTCTCCTGGGCGCCTACACGCCCGAggcctcccggtcca
caggCAACGCAGTGAAGACGGTGCTGAAGGCGTGGGCACTGGCCGTGCCC
GGTGGGCTTGTGGGGAGGGGCTTGCTGAAGGGGGAAGTGCCCCCTGTGCC
ATTCATGGCGGTGACGATGGTTACCACGCTGGTGCTTCTGACCGCGTGGC
GGGTGGcagtggtggcggtggcggggggagaggtggaagggggggagggg
aacaaaCGGAGCGGGTTGTTCGACGTCTTCAAGATGGTCACCACTCTGAT
TGGACGTTGGTGAatggggagggaaaagcaacACAACCCCATCCCGctac
tcttcctcctcctcgtcgccacATCTTTCCCTGCTGTTTTCGCCTTTGTC
GTACCCTCCATCCCATCGGGACGGGACTCTTACATCCTCCGCACTCCAAT
GTTTGTCGCCTCAAAGCTCCCTTCCAGCTCCGCGTCAGGGAGTCGACAAG
CAGCTTTTGGGGCTTTGCTCGCGCGAAAACAGAGAACGTTGGCAGAGGAA
TTGGACGATTTACGACTGGACGAATCGACCATGAGcgcggaggaaaaaaa
gaggttGCAAGGGCTGCGAGCTTCTTATAAActggaggacgtgctggaCT
TCGACGGCACAAACGCTGAGccccttccctccgcccctgcctcccccgcc
caggcGGACCCGGACTACGACCCCCTCGACGACGCCGAGgacctggccgt
ggccgagACCGCCTGGTCGGGTCAAGCGGGCCTGGACGTTCGGCGGGTGG
GCGAAAACAATTGGAAGGACGTGGGCGCCCGGCCTCTCTTGGCACTGGGG
GACGTGCTCATGTTCCTGCTCTTCGCCAGCGTCGGTCGCTCCATTCACAC
GGGCGGACTCTCACTCGACGTCCAGGTGGTGCAGACGGCCGCTCCCTTTA
TCCTGGCCTGGTTGGGCCTGGCGCCTCTCCTGGGCGCCTACACGCCCGAg
gcctcccggtccacaggCAACGCAGTGAAGACGGTGCTGAAGGCGTGGGC
ACTGGCCGTGCCCGGTGGGCTTGTGGGGAGGGGCTTGCTGAAGGGGGAAG
TGCCCCCTGTGCCATTCATGGCGGTGACGATGGTTACCACGCTGGTGCTT
CTGACCGCGTGGCGGGTGGcagtggtggcggtggcggggggagaggtgga
agggggggaggggaacaaaCGGAGCGGGTTGTTCGACGTCTTCAAGATGG
TCACCACTCTGATTGGACGTTGGTGA

Synonyms

Publications