EWM23298.1, cds7383 (CDS) Nannochloropsis gaditana

Overview
NameEWM23298.1
Unique Namecds7383
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:491962..492318 +
Alignment locationCM002471.1:492587..493192 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23298.1
ProductProtein of unknown function DUF3054
Orig transcript idgnl|cribi|Naga_100158g9.7794.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:491962..492318 +
CM002471.1supercontigCM002471.1:492587..493192 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021414DUF3054
Homology
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|585104303|gb|EWM23298.1| (Protein of unknown function DUF3054 [Nannochloropsis gaditana])

HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query:    1 MGREKQHNPIPLLFLLLVATSFPAVFAFVVPSIPSGRDSYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            MGREKQHNPIPLLFLLLVATSFPAVFAFVVPSIPSGRDSYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW
Sbjct:    1 MGREKQHNPIPLLFLLLVATSFPAVFAFVVPSIPSGRDSYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|553188978|ref|XP_005854905.1| (hypothetical protein NGA_0392200, partial [Nannochloropsis gaditana CCMP526] >gi|422294149|gb|EKU21449.1| hypothetical protein NGA_0392200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 274/277 (98.92%), Postives = 274/277 (98.92%), Query Frame = 0
Query:    1 MGREKQHNPIPLLFLLLVATSFPAVFAFVVPSIPSGRDSYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTL 277
            MGREKQHNPIPLLFLLL ATSFPAVFAFV PSIPSGRD YILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTL
Sbjct:    1 MGREKQHNPIPLLFLLLAATSFPAVFAFVAPSIPSGRDFYILRTPMFVASKLPSSSASGSRQAAFGALLARKQRTLAEELDDLRLDESTMSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTL 277          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|299116121|emb|CBN76030.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.606 bits (392), Expect = 5.965e-41
Identity = 100/234 (42.74%), Postives = 136/234 (58.12%), Query Frame = 0
Query:   90 MSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRV--GENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLK-GEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            M+AEE++R +GL +  +              L    A   Q     D  +D +DL V +TAW GQAGLDV     G  +W D+ AR  LA+GD +   +FA VGR+ H G  S D+ V+ TA PF++ WL ++PLLGAYT  A+ + G A K +L AW +++P G+  R L K GEVPPVPF   +M+ TL  L AWR    AV       GEG+K++GL D F+M+TTL+ RW
Sbjct:  147 MTAEERQRAEGLASIER-------------SLAEVTAIQRQLGISVDEDEDEKDLEVTDTAWRGQAGLDVTDAADGSRDWSDLSARKGLAVGDAVALTMFAYVGRASH-GMASFDLGVLLTALPFLIGWLAVSPLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVN----PTGEGDKQAGLLDGFRMITTLLQRW 362          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|546323141|ref|XP_005717989.1| (unnamed protein product [Chondrus crispus] >gi|507114576|emb|CDF38120.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 149.058 bits (375), Expect = 2.535e-37
Identity = 83/178 (46.63%), Postives = 110/178 (61.80%), Query Frame = 0
Query:  144 LAVAETAWSGQAGLDVR-RVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            L   +  WSGQAG+D     G +N+ D+G R  LALGD   FLLFA +G++ H G  SL+  VVQTA PFI+AWL  +PLLGAYT  A+ +    VKT  K+WA+AVP G+  RG+L   VPP  F  VT+V+T  ++  WRV    + G E +     +R G+ D F MV+TL+ RW
Sbjct:  333 LTNEDVNWSGQAGVDTPGSSGTSNYSDLGKRLDLALGDTAAFLLFAYIGKASH-GDKSLNFGVVQTATPFIVAWLATSPLLGAYTRAATANVAATVKTFAKSWAIAVPMGIGLRGVLTDHVPPAVFAVVTLVSTFAIVGGWRVLYTKIRGDETDEA---RRGGILDGFNMVSTLLRRW 506          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|1189389735|gb|OSX76712.1| (hypothetical protein BU14_0178s0028 [Porphyra umbilicalis])

HSP 1 Score: 139.428 bits (350), Expect = 2.994e-34
Identity = 78/171 (45.61%), Postives = 106/171 (61.99%), Query Frame = 0
Query:  151 WSGQAGLDVRR-VGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            WSGQAG+DV       ++ D+ A PLLA GDV +FL FA++G + H    +  + V  TAAPFI+AWL +APL+GAYT  A  +   A  T  +AW + VP GL  RG++   +PP  F  VT+++T VLL  WR + V + G EV  G   KR G+ D F+M+TTL+ RW
Sbjct:  272 WSGQAGVDVNTPAAPPSYADMAAHPLLAAGDVAVFLAFATIGAASHAANAN-PLSVTLTAAPFIVAWLAVAPLMGAYTRRAVGTYQGAAVTTARAWLVGVPSGLALRGVVTSHLPPPSFAVVTLLSTAVLLGVWRGSYVKLRGAEVAEG---KRGGVLDGFRMITTLLRRW 438          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|873232234|emb|CEM05849.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 131.339 bits (329), Expect = 1.817e-32
Identity = 78/188 (41.49%), Postives = 116/188 (61.70%), Query Frame = 0
Query:  135 YDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLS--LDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            +D +D+ +   +  T W+GQAGL+VRRVG++NW D+  R LLA GD +  L FA  GR+ H       L   V QTAAPF++AW G++PLLGAYT +A+ +     + ++ AWA++   GL  R + +GE PP  F+ +++V T V+L++WR   V + G E + GE  KR  + D  K +T L+ RW
Sbjct:  103 WDVVDERD---IERTQWTGQAGLEVRRVGKSNWMDIPDRWLLASGDAVALLAFALAGRANHGAQQETILSPGVWQTAAPFLIAWFGISPLLGAYTHDATANYKKMAQVLIPAWAVSASMGLALRAVYRGEQPPGVFVVISLVATAVVLSSWRAFYVLINGEETDDGE-MKRGNVLDGAKALTNLLRRW 286          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|971517808|dbj|GAQ80398.1| (hypothetical protein KFL_000530250 [Klebsormidium nitens])

HSP 1 Score: 114.005 bits (284), Expect = 9.242e-27
Identity = 75/192 (39.06%), Postives = 109/192 (56.77%), Query Frame = 0
Query:  130 QADPDYDPLDDAEDLAVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEASRSTG-NAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            +ADP+       ++  V E    G A +D    GE+N  ++G   LL  GD +  LLFA  G+  H+G  + D  VV TAAPF++ W   A LLG Y  +A+ S    AV T   AWA+ +P G+V RG+LKG+VPP PF+ VT+ +T VLL  WR A+ A  G   +   GN+    F+  +++++L+ RW
Sbjct:   32 EADPNLKTYAVEDENVVVE----GVAKIDR---GEDN-MNLGRLALLVAGDTVALLLFALAGKVSHSG--TADFGVVPTAAPFLVGWFASATLLGGYGADATLSGPLKAVTTTGIAWAVGIPLGIVIRGVLKGQVPPTPFILVTLASTFVLLVGWRAALAATGG---KRDVGNRSGSAFEFLELLSSLVRRW 210          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|514814254|ref|XP_004981899.1| (PREDICTED: uncharacterized protein LOC101786698 [Setaria italica])

HSP 1 Score: 108.612 bits (270), Expect = 3.585e-24
Identity = 64/149 (42.95%), Postives = 92/149 (61.74%), Query Frame = 0
Query:  175 LLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEAS--RSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAV-AGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            LLA GDVL  LLF+++GR  H G   LD +  +TA PFI  WL  A LLG +  +A      G+AV T  K+WA+ +P GL  R +  G +PP PF+ VTM +T VLLTAWR  V  + + G+ +  +  +R   F++F+++T+L+ RW
Sbjct:  114 LLAGGDVLCLLLFSAIGRFSH-GLPVLDAETFKTADPFIAGWLLSAYLLGGFGEDAKGRNGVGSAVITAAKSWAVGIPLGLAIRAVTSGHIPPTPFILVTMGSTGVLLTAWRALVSQILSTGQKQQDDVYRRGSPFELFELLTSLVRRW 261          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|242033097|ref|XP_002463943.1| (uncharacterized protein LOC8059959 [Sorghum bicolor] >gi|241917797|gb|EER90941.1| hypothetical protein SORBI_3001G104800 [Sorghum bicolor])

HSP 1 Score: 107.457 bits (267), Expect = 9.189e-24
Identity = 79/206 (38.35%), Postives = 114/206 (55.34%), Query Frame = 0
Query:  120 PLPSAPASPAQADPDYDPL-DDAEDL-AVAETAWSGQAGLDVRRVGENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEAS--RSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAVVAVAGGEVEGGEGNKRSGL-FDVFKMVTTLIGRW 320
            P  S+PA+ A  DP    + DD   L  V +    G AG++ + V   ++  +G   LLA GDV   LLF+++GR  H G   LD +  +TA PFI  WL  A LLG +  +A      GNAV    K+WA+ +P GL  R +  G +PP PF+ VTM +T VLLTAWR  V  +   + +  +   R G  F++F+++T+L+ RW
Sbjct:   68 PSGSSPAAAATEDPVLVRVADDGVPLEGVIQIEKPGDAGVESKLV---SYAKLG---LLAGGDVFCLLLFSAIGRFSH-GLPVLDAETFKTADPFIAGWLLSAYLLGGFGDDAKGRNGVGNAVIAAAKSWAVGIPLGLAIRAVTSGHIPPTPFILVTMGSTGVLLTAWRALVSQLLSNQQKQQDDVYRRGSPFELFELLTSLVRRW 266          
BLAST of EWM23298.1 vs. NCBI_GenBank
Match: gi|1002247960|ref|XP_015628153.1| (PREDICTED: uncharacterized protein LOC4333986 [Oryza sativa Japonica Group] >gi|28273393|gb|AAO38479.1| unknown protein [Oryza sativa Japonica Group])

HSP 1 Score: 104.76 bits (260), Expect = 1.041e-22
Identity = 62/149 (41.61%), Postives = 89/149 (59.73%), Query Frame = 0
Query:  175 LLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFILAWLGLAPLLGAYTPEAS--RSTGNAVKTVLKAWALAVPGGLVGRGLLKGEVPPVPFMAVTMVTTLVLLTAWRVAV-VAVAGGEVEGGEGNKRSGLFDVFKMVTTLIGRW 320
            LLA GDVL  L+F+++GR  H G   LD +  +TA PFI  WL  A LLG +  +A      GNAV    K+WA+ +P GL  R L  G +PP PF+ V M +T VLLT WR  V +  + G+ +  +  +R   F++F+++T+L+ RW
Sbjct:  124 LLASGDVLCLLVFSAIGRFSH-GLPVLDAETFKTADPFIAGWLLSAYLLGGFGDDAKGRNGVGNAVVVAAKSWAVGIPLGLAIRALSSGHIPPTPFILVAMGSTWVLLTGWRALVSLLFSTGQSQQDDVYRRGSPFELFELLTSLVRRW 271          
The following BLAST results are available for this feature:
BLAST of EWM23298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104303|gb|EWM23298.1|0.000e+0100.00Protein of unknown function DUF3054 [Nannochlorops... [more]
gi|553188978|ref|XP_005854905.1|0.000e+098.92hypothetical protein NGA_0392200, partial [Nannoch... [more]
gi|299116121|emb|CBN76030.1|5.965e-4142.74conserved unknown protein [Ectocarpus siliculosus][more]
gi|546323141|ref|XP_005717989.1|2.535e-3746.63unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|1189389735|gb|OSX76712.1|2.994e-3445.61hypothetical protein BU14_0178s0028 [Porphyra umbi... [more]
gi|873232234|emb|CEM05849.1|1.817e-3241.49unnamed protein product [Vitrella brassicaformis C... [more]
gi|971517808|dbj|GAQ80398.1|9.242e-2739.06hypothetical protein KFL_000530250 [Klebsormidium ... [more]
gi|514814254|ref|XP_004981899.1|3.585e-2442.95PREDICTED: uncharacterized protein LOC101786698 [S... [more]
gi|242033097|ref|XP_002463943.1|9.189e-2438.35uncharacterized protein LOC8059959 [Sorghum bicolo... [more]
gi|1002247960|ref|XP_015628153.1|1.041e-2241.61PREDICTED: uncharacterized protein LOC4333986 [Ory... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7400rna7400Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications