rna7399, rna7399 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7399
Unique Name	rna7399
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1695
Alignment location	CM002471.1:487362..490143 -

Link to JBrowse

Properties


Property Name	Value
Product	Leucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript id	gnl\|cribi\|Naga_100158g10.7785.mrna
Orig protein id	gnl\|cribi\|Naga_100158g10.7785
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:487362..490143 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g10	gene7158	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23289.1	cds7382	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7399	rna7399-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:487362..490143-
coding sequence from alignment at CM002471.1:487362..490143-

mRNA sequence

>rna7399 ID=rna7399|Name=rna7399|organism=Nannochloropsis gaditana|type=mRNA|length=1695bp
TTCCTATGGCGTGGCCCGGCGACAGTCTAGCCAACAAACAAGGCCAAAGT
AAAACGAGTCATCCCGATTGTATTACCATAGTGTGGGTGGGGTCAGCGTG
TCATGTCGATGTTTTTTGGGGCAGTGTCTTGACTTCATGTTGCCATACTT
TACCCTTCTGGCCCTCATCGTTGGCTGGGCTCTACTTGGGATCAAGCTAG
GAGCCTCCAGCCTCCCCTCAACCCCTCTCTTGCTCTGACCTTGTGCGAAA
AAAAACATAAGGCAACACAGTACACCATGGCCAGAAGAAGATTACATGGA
CCTGCGCTGCATTCAAGTGTCTTCTTGCTGTTTTCCCTGCTTCCCACATC
TAGCGCGTTCCTCACCCCTTGCCGTCCGGCCCTCCAGTCCCAACACCAAC
TCTCCCACCCCGCAGCACTTTCCACACCGTCTCCCTTTTGTGACCGCCAA
CATGATGGACGGCTACCTCTTTCTCTTTCTGCGACTACGATGGCGCATCG
AGCTCCAGGGACTGCTAACTTAGATTGGGCCAACTTGGGCTTTGAATTCA
GGCAGACAAGGAGTCACATAAAGTTTGTTTGGAAAAATGGTGAATGGTCG
GAAGGTGAACTGGTGGCCGATCCGTACGTGAAAGTTCATATTGCTAACAC
AGGCTTACATTACGGGCAAGCTATCTTTGAAGGGCTGAAGGCATTTGCCT
GGCAAGACGGCTCCATTCGCATATTCCGTCCGCAGGAGAATGCCAAGCGC
CTCCGTATGTCAGCTGAGCGGCTCTTGATGACCGCCTTTCCCGAGGACAA
ATTCGTGGAAGCGGTCAGACGCGTGGTGGCAGATAATGCAGACTACGTTC
CCCCCTTTGGCACAGGGGGCTCACTCTACATCCGCCCCCTCCTCTTTGGG
AGCGGGCCGCGCATCGGCCTCAATCCCTCCGACGAATACACCCTCTTGAT
CATGCCCATTCCCGTAGGCGACTACTACAAGGGCGGTCTGTCCCCCGTCT
CGGCCCTGGTCATCGACGATTACGACAGGGCAGCTCCCCGGGGCGTCGGC
CACGTGAAGGTGGCGGGAAACTATGCGGCAGACCTGCTCCCGAATTTGCT
GGGGAAGAAGAAGGGCTACCCCATCGGCTTGTACCTCGATGCTAAGACGA
ACAGCTTTGTGGAGGAGTTTTCCACCTCCAACTTCGTTGCCATCGACTCG
TCAGGCGCCTTTGTCACGCCTCGATCTCCCACGGTCCTACCCTCCATCAC
GAACAAATCGCTCATGGACTTGGCGCGCGATGAGGGGCTGGCGGTGCAGG
AGAGAGCGATACCCATAACAGAGGTGAAGACCCTGCGCGAGGTAGCCGCA
TGTGGGACTGCCGTGGTGGTGACGCCTGTAAACCGGGTCGTCTACAGGGA
TGAGGTAATTAAAATCGGGGGAGAAGACGGGGGAACGGGGCCGGTCACAG
CGAAGCTCTACAGTAGGGTGCGTGCCATACAGCAAGGGGAAGCGGAAGAT
AAGTTCAGTTGGACGGTAAAGGTGTGAGGGCCTCCCGCGAACGGTATGAA
AACGCAGTCGAGGGTCATCCTCATGTTTGAGGGGGAGTAGGGGCCAGGGA
GAGTCATGGAGGGAGAGCGTTAATGGAATTGTCGAGCTTTTATATTAATG
AGAGGGATGACAAAGTATGATAAAGGCGATTTCAGAATGGTTTGT

protein sequence of rna7399

>rna7399-protein ID=rna7399-protein|Name=rna7399|organism=Nannochloropsis gaditana|type=polypeptide|length=812bp
MAPFGDNKRHESQTILPNHRRRTSWTVLFDGAVPHVSLFMGFREHLMMAS
TCHTFYARWPIQSKILKMGVYLHRTSVPVASTPLREINCQLHRDRAGGSI
WRENGSSHDLKWRSLSRVLQHWSHIETLRFSGCISGPQEYFFQEALVELP
ASTLQKQQYHRSQRQKNVSLSAGNEKPYTFMTRSMLPQLKELVFSRIGLS
PANASSMAAILVGPLGSRLVDLDLSHNPLKDEGFHTIFKSLAASMPEPPG
SGPRRRRSSSSTAHGLSALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLL
VLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSA
GMGGGMAALKSLNVGSNYVDSEGVRALALVMRLGKLSRLDHLKVDLSGEN
ALSLLAAGWNRDGGAGWEGEREGQAGGDLEKEGCPPLRRLDLEKNASLYG
QGWAEVVEGGREGGLPASLEALNLAHCKRLGEKGLAGVLAWGRMHGPGRH
ESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGG
RALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALPRCACLR
ELFFANNDLSPSFWREGRAVEMLGGGNMEALRVLDISKNALGPGFLPSQD
SHALSALLARLHVLKMAWTDAGPEDVAALIAGFKGGVAGGEEEKLSGVPL
TVLDLAYNTRMGETEVLRLLEFSLSPRMGRLRALSLVGTGMGDAVVTALT
GLLTLDRVLACEHLETVELRGNDGISKGCRQQLLGHLARLHNRLAEEAVW
GHSRRLQSLVRI

mRNA from alignment at CM002471.1:487362..490143-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7399 ID=rna7399|Name=rna7399|organism=Nannochloropsis gaditana|type=mRNA|length=2782bp|location=Sequence derived from alignment at CM002471.1:487362..490143- (Nannochloropsis gaditana)
GTGTTTCTTTTTGGCTCCGAGGCAGATACAGAGCAAAGACGTGGCGGTCA
CTCACACCCCTCCTTGTTTTTTCACCAGGGACGCAGTCGAAGAACACAAC
CATCGCGCTTCGTGCCGTCGGCCAAACAATTATGGCACCGTTTGGGGACA
ATAAGCGCCACGAGTCCCAGACAATCCTTCCTAATCACAGGCGGCGGACG
AGCTGGACTGTATTGTTTGACGGCGCAGTACCCCACGTGAGTCTCTTCAT
GGGGTTTCGAGAGCATCTTATGATGGCTTCGACTTGTCACACCTTCTACG
CCCGGTGGCCTATACAATCAAAAATATTAAAAATGGGCGTATACCTGCAT
CGTACCTCGGTCCCCGTGGCCTCAACGCCTCTCAGGGAAATAAACTGCCA
ACTACACCGTGATAGGGCAGGAGGCAGCATATGGCGCGAAAATGGAAGCT
CCCATGACTTGAAATGGAGAAGCCTCTCTCGCGTACTACAGCATTGGTCT
CACATTGAGACTCTACGTTTCTCTGGTTGCATTAGCGGTCCTCAAGAATA
TTTTTTTCAGGAAGCCCTAGTGGAGTTGCCTGCATCGACTCTACAAAAGC
AGCAGTACCATAGGTCTCAGCGACAGAAAAACGTGTCGTTAAGCGCAGGA
AACGAGAAGCCGTACACCTTTATGACACGTTCCATGCTGCCACAGCTTAA
AGAGCTGGTCTTTTCCAGGATTGGCCTCTCGCCTGCAAACGCCTCCTCCA
TGGCTGCAATCCTGGTCGGCCCCCTCGGGTCCCGCCTGGTCGATTTAGAC
CTCTCGCATAACCCCTTAAAAGACGAAGGATTTCACACCATCTTCAAATC
GCTGGCTGCCAGCATGCCGGAGCCCCCTGGCTCCGGCCCACGGCGTCGCC
GGTCCTCGTCCTCCACTGCTCACGGTCTCTCTGCCCTCCAAAGCCTGGAC
CTGTCGCACACGCACCTTACCCACACCGGCCTCGGCTCCTTCCTCCTAGC
CTTACGGAAAGGGTGTGTGTCGAACCTGCTTGTGCTTATGCTAGGGGGAA
ACCCTCTCAAAGAGGAGGGCGGACTCGTCTTGACGGCCATCCTGGAGGGT
CACCACCTCCCTCGCCTCCGCACCCTCGACGCGAGTGCATGCGGCATGGG
CCCTCTGGCCACCAGGACTTTGCTCTCAGCGGGGATGGGCGGCGGGATGG
CAGCTTTGAAGAGCCTGAACGTAGGGAGTAACTACGTAGACTCGGAGGGC
GTGCGGGCCCTGGCCCTGGTCATGCGCCTGGGAAAACTCTCCCGCTTGGA
CCATCTGAAGGTGGATTTAAGTGGTGAGAATGCGCTCTCACTGCTAGCAG
CAGGTTGGAACCGAGACGGAGGGGCAGGTTGGGAGGGAGAGAGGGAAGGA
CAGGCAGGGGGAGATTTGGAAAAGGAGGGTTGCCCCCCGCTACGGCGTCT
CGACTTGGAGAAGAATGCGTCCCTGTACGGACAGGGATGGGCCGAGGTGG
TGGAGGGAGGGAGGGAAGGAGGGCTCCCGGCCAGCTTGGAGGCGTTGAAT
CTGGCGCACTGTAAGCGGTTGGGCGAGAAGGGCTTGGCAGGCGTGTTGGC
CTGGGGTCGCATGCACGGGCCGGGACGGCATGAAAGCCGACTTACCTGCT
TGGATTTGAGCGAAACAAGCCTAGACGGAGACAATGTCCGAACGCAGCAG
CATTTACGGGAGTTGTGGGAAGTCTTTCCCGGTTTGACACATTTAAATTT
GCGCGGGAATCGTCTTGGGTGGGCGGGAGGGAGGGCTCTAGCCGAGGGGC
TGGCCTCGTCGCGGACGGGCGGAGGGGCCAAGGCCAATGCTCTGGTGGTG
TTGGACGTGGCAGGGACCGCGCTGGGTGACGAGGGGGCTTCCTCCCTGTT
GCAGGCTCTTCCCAGGTGTGCCTGTTTGCGGGAGCTCTTCTTCGCCAACA
ACGACCTGAGTCCCTCCTTTTGGCGGGAAGGGCGGGCAGTGGAGATGCTG
GGGGGTGGAAACATGGAAGCCTTGCGGGTCTTGGACATTAGCAAGAACGC
TCTCGGCCCCGGTTTCCTCCCTTCTCAGGACTCCCACGCCTTGTCAGCCT
TGCTGGCTCGTCTGCACGTCTTGAAGATGGCATGGACGGATGCGGGGCCT
GAGGATGTGGCCGCATTGATTGCAGGATTCAAGGGCGGAGTGGCCGGTGG
AGAGGAGGAGAAACTTTCCGGCGTGCCTTTGACGGTCCTGGACCTGGCCT
ACAACACCCGCATGGGGGAGACGGAGGTGTTGCGGCTGCTGGAATTCTCT
CTCAGCCCTCGAATGGGCCGTCTCCGCGCCCTCTCCCTGGTGGGGACGGG
GATGGGGGATGCGGTTGTCACGGCCTTGACAGGACTGCTGACATTGGACA
GGGTGCTGGCGTGCGAGCATTTGGAGACGGTGGAGCTCCGAGGCAACGAC
GGCATCAGCAAGGGCTGTCGTCAGCAGCTTCTCGGACACTTGGCTCGTCT
TCACAATCGGTTGGCTGAGGAGGCTGTATGGGGACATTCACGACGACTTC
AATCGCTGGTTCGCATATAGATTTTAAAGCAATTAGCTTTATGAGGGTGG
TGTGAAGAGGTAATGCATCGTCATAATCCAAAGCCGCGCTCAGAGTAGAA
TTCCACGGATAGGGAAATACAGGGTGTGAAACATCAAGTGCTTCGTTGTC
AGATGGGGCAAAACAAACGTACAACAGCGAGCAGCAAAATTTACGAGTCA
GAGCTTGATTTTCCCTCGCTAGTCAGTCTTTT

Coding sequence (CDS) from alignment at CM002471.1:487362..490143-

>rna7399 ID=rna7399|Name=rna7399|organism=Nannochloropsis gaditana|type=CDS|length=2439bp|location=Sequence derived from alignment at CM002471.1:487362..490143- (Nannochloropsis gaditana)
ATGGCACCGTTTGGGGACAATAAGCGCCACGAGTCCCAGACAATCCTTCC
TAATCACAGGCGGCGGACGAGCTGGACTGTATTGTTTGACGGCGCAGTAC
CCCACGTGAGTCTCTTCATGGGGTTTCGAGAGCATCTTATGATGGCTTCG
ACTTGTCACACCTTCTACGCCCGGTGGCCTATACAATCAAAAATATTAAA
AATGGGCGTATACCTGCATCGTACCTCGGTCCCCGTGGCCTCAACGCCTC
TCAGGGAAATAAACTGCCAACTACACCGTGATAGGGCAGGAGGCAGCATA
TGGCGCGAAAATGGAAGCTCCCATGACTTGAAATGGAGAAGCCTCTCTCG
CGTACTACAGCATTGGTCTCACATTGAGACTCTACGTTTCTCTGGTTGCA
TTAGCGGTCCTCAAGAATATTTTTTTCAGGAAGCCCTAGTGGAGTTGCCT
GCATCGACTCTACAAAAGCAGCAGTACCATAGGTCTCAGCGACAGAAAAA
CGTGTCGTTAAGCGCAGGAAACGAGAAGCCGTACACCTTTATGACACGTT
CCATGCTGCCACAGCTTAAAGAGCTGGTCTTTTCCAGGATTGGCCTCTCG
CCTGCAAACGCCTCCTCCATGGCTGCAATCCTGGTCGGCCCCCTCGGGTC
CCGCCTGGTCGATTTAGACCTCTCGCATAACCCCTTAAAAGACGAAGGAT
TTCACACCATCTTCAAATCGCTGGCTGCCAGCATGCCGGAGCCCCCTGGC
TCCGGCCCACGGCGTCGCCGGTCCTCGTCCTCCACTGCTCACGGTCTCTC
TGCCCTCCAAAGCCTGGACCTGTCGCACACGCACCTTACCCACACCGGCC
TCGGCTCCTTCCTCCTAGCCTTACGGAAAGGGTGTGTGTCGAACCTGCTT
GTGCTTATGCTAGGGGGAAACCCTCTCAAAGAGGAGGGCGGACTCGTCTT
GACGGCCATCCTGGAGGGTCACCACCTCCCTCGCCTCCGCACCCTCGACG
CGAGTGCATGCGGCATGGGCCCTCTGGCCACCAGGACTTTGCTCTCAGCG
GGGATGGGCGGCGGGATGGCAGCTTTGAAGAGCCTGAACGTAGGGAGTAA
CTACGTAGACTCGGAGGGCGTGCGGGCCCTGGCCCTGGTCATGCGCCTGG
GAAAACTCTCCCGCTTGGACCATCTGAAGGTGGATTTAAGTGGTGAGAAT
GCGCTCTCACTGCTAGCAGCAGGTTGGAACCGAGACGGAGGGGCAGGTTG
GGAGGGAGAGAGGGAAGGACAGGCAGGGGGAGATTTGGAAAAGGAGGGTT
GCCCCCCGCTACGGCGTCTCGACTTGGAGAAGAATGCGTCCCTGTACGGA
CAGGGATGGGCCGAGGTGGTGGAGGGAGGGAGGGAAGGAGGGCTCCCGGC
CAGCTTGGAGGCGTTGAATCTGGCGCACTGTAAGCGGTTGGGCGAGAAGG
GCTTGGCAGGCGTGTTGGCCTGGGGTCGCATGCACGGGCCGGGACGGCAT
GAAAGCCGACTTACCTGCTTGGATTTGAGCGAAACAAGCCTAGACGGAGA
CAATGTCCGAACGCAGCAGCATTTACGGGAGTTGTGGGAAGTCTTTCCCG
GTTTGACACATTTAAATTTGCGCGGGAATCGTCTTGGGTGGGCGGGAGGG
AGGGCTCTAGCCGAGGGGCTGGCCTCGTCGCGGACGGGCGGAGGGGCCAA
GGCCAATGCTCTGGTGGTGTTGGACGTGGCAGGGACCGCGCTGGGTGACG
AGGGGGCTTCCTCCCTGTTGCAGGCTCTTCCCAGGTGTGCCTGTTTGCGG
GAGCTCTTCTTCGCCAACAACGACCTGAGTCCCTCCTTTTGGCGGGAAGG
GCGGGCAGTGGAGATGCTGGGGGGTGGAAACATGGAAGCCTTGCGGGTCT
TGGACATTAGCAAGAACGCTCTCGGCCCCGGTTTCCTCCCTTCTCAGGAC
TCCCACGCCTTGTCAGCCTTGCTGGCTCGTCTGCACGTCTTGAAGATGGC
ATGGACGGATGCGGGGCCTGAGGATGTGGCCGCATTGATTGCAGGATTCA
AGGGCGGAGTGGCCGGTGGAGAGGAGGAGAAACTTTCCGGCGTGCCTTTG
ACGGTCCTGGACCTGGCCTACAACACCCGCATGGGGGAGACGGAGGTGTT
GCGGCTGCTGGAATTCTCTCTCAGCCCTCGAATGGGCCGTCTCCGCGCCC
TCTCCCTGGTGGGGACGGGGATGGGGGATGCGGTTGTCACGGCCTTGACA
GGACTGCTGACATTGGACAGGGTGCTGGCGTGCGAGCATTTGGAGACGGT
GGAGCTCCGAGGCAACGACGGCATCAGCAAGGGCTGTCGTCAGCAGCTTC
TCGGACACTTGGCTCGTCTTCACAATCGGTTGGCTGAGGAGGCTGTATGG
GGACATTCACGACGACTTCAATCGCTGGTTCGCATATAG

Synonyms

Publications