EWM23289.1, cds7382 (CDS) Nannochloropsis gaditana

Overview
NameEWM23289.1
Unique Namecds7382
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:487574..490012 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23289.1
ProductLeucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript idgnl|cribi|Naga_100158g10.7785.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:487574..490012 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003590Leu-rich_rpt_RNase_inh_sub-typ
Homology
BLAST of EWM23289.1 vs. NCBI_GenBank
Match: gi|585104294|gb|EWM23289.1| (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 1627.84 bits (4214), Expect = 0.000e+0
Identity = 812/812 (100.00%), Postives = 812/812 (100.00%), Query Frame = 0
Query:    1 MAPFGDNKRHESQTILPNHRRRTSWTVLFDGAVPHVSLFMGFREHLMMASTCHTFYARWPIQSKILKMGVYLHRTSVPVASTPLREINCQLHRDRAGGSIWRENGSSHDLKWRSLSRVLQHWSHIETLRFSGCISGPQEYFFQEALVELPASTLQKQQYHRSQRQKNVSLSAGNEKPYTFMTRSMLPQLKELVFSRIGLSPANASSMAAILVGPLGSRLVDLDLSHNPLKDEGFHTIFKSLAASMPEPPGSGPRRRRSSSSTAHGLSALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMGGGMAALKSLNVGSNYVDSEGVRALALVMRLGKLSRLDHLKVDLSGENALSLLAAGWNRDGGAGWEGEREGQAGGDLEKEGCPPLRRLDLEKNASLYGQGWAEVVEGGREGGLPASLEALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALPRCACLRELFFANNDLSPSFWREGRAVEMLGGGNMEALRVLDISKNALGPGFLPSQDSHALSALLARLHVLKMAWTDAGPEDVAALIAGFKGGVAGGEEEKLSGVPLTVLDLAYNTRMGETEVLRLLEFSLSPRMGRLRALSLVGTGMGDAVVTALTGLLTLDRVLACEHLETVELRGNDGISKGCRQQLLGHLARLHNRLAEEAVWGHSRRLQSLVRI 812
            MAPFGDNKRHESQTILPNHRRRTSWTVLFDGAVPHVSLFMGFREHLMMASTCHTFYARWPIQSKILKMGVYLHRTSVPVASTPLREINCQLHRDRAGGSIWRENGSSHDLKWRSLSRVLQHWSHIETLRFSGCISGPQEYFFQEALVELPASTLQKQQYHRSQRQKNVSLSAGNEKPYTFMTRSMLPQLKELVFSRIGLSPANASSMAAILVGPLGSRLVDLDLSHNPLKDEGFHTIFKSLAASMPEPPGSGPRRRRSSSSTAHGLSALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMGGGMAALKSLNVGSNYVDSEGVRALALVMRLGKLSRLDHLKVDLSGENALSLLAAGWNRDGGAGWEGEREGQAGGDLEKEGCPPLRRLDLEKNASLYGQGWAEVVEGGREGGLPASLEALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALPRCACLRELFFANNDLSPSFWREGRAVEMLGGGNMEALRVLDISKNALGPGFLPSQDSHALSALLARLHVLKMAWTDAGPEDVAALIAGFKGGVAGGEEEKLSGVPLTVLDLAYNTRMGETEVLRLLEFSLSPRMGRLRALSLVGTGMGDAVVTALTGLLTLDRVLACEHLETVELRGNDGISKGCRQQLLGHLARLHNRLAEEAVWGHSRRLQSLVRI
Sbjct:    1 MAPFGDNKRHESQTILPNHRRRTSWTVLFDGAVPHVSLFMGFREHLMMASTCHTFYARWPIQSKILKMGVYLHRTSVPVASTPLREINCQLHRDRAGGSIWRENGSSHDLKWRSLSRVLQHWSHIETLRFSGCISGPQEYFFQEALVELPASTLQKQQYHRSQRQKNVSLSAGNEKPYTFMTRSMLPQLKELVFSRIGLSPANASSMAAILVGPLGSRLVDLDLSHNPLKDEGFHTIFKSLAASMPEPPGSGPRRRRSSSSTAHGLSALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMGGGMAALKSLNVGSNYVDSEGVRALALVMRLGKLSRLDHLKVDLSGENALSLLAAGWNRDGGAGWEGEREGQAGGDLEKEGCPPLRRLDLEKNASLYGQGWAEVVEGGREGGLPASLEALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALPRCACLRELFFANNDLSPSFWREGRAVEMLGGGNMEALRVLDISKNALGPGFLPSQDSHALSALLARLHVLKMAWTDAGPEDVAALIAGFKGGVAGGEEEKLSGVPLTVLDLAYNTRMGETEVLRLLEFSLSPRMGRLRALSLVGTGMGDAVVTALTGLLTLDRVLACEHLETVELRGNDGISKGCRQQLLGHLARLHNRLAEEAVWGHSRRLQSLVRI 812          
BLAST of EWM23289.1 vs. NCBI_GenBank
Match: gi|672817956|gb|KFH62859.1| (hypothetical protein MVEG_11384 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 69.707 bits (169), Expect = 1.487e-8
Identity = 120/456 (26.32%), Postives = 192/456 (42.11%), Query Frame = 0
Query:  216 GSRLVDLDLSHNPLKDEGFHTIFKSLAASMPEPPGSGPRRRRSSSSTAHGLSALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMGGGMAALKSLNVGSNYVDSEGVRALALVMRLGK-LSRLDHLKVDLSGENALSLLAAGWNRD-------GGAGWEGEREGQAGGDLEKEGCPPLRRLDLEKNASLYGQGWAEVVEGGREGGLPASLE-ALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRT--------------GGGAKANALVV------LDVAGTALGDEGASSLLQALPRCACLRELFFANNDLSPS-FWREGRAVEMLGGGNMEALRVLDISKNAL 641
             S L  LDLS N + D+G   + ++L  ++                       L +L+LS   +   G  +   A +   +  L  L L  N + ++G   L   L+ + +  L TLD S   +G    + L  A     +  L +LN+ +N +  +G+ A + + +    L+ L   K  + G  AL LL +   R        G    EG+ E QA  +  K     L  LDL+ N S+   G   + E  +      +L+ A+NL      G + L+  L         +  S LT LDL + +L GDN    Q L E  ++   LT L+L  N +G  G +ALAE L ++ T              G  A + AL +      LD+ G ++GD GA +L +AL   + L  L   NN +S S  W   +A+++        L  LD+ +N++
Sbjct:  194 NSTLTTLDLSQNKIGDDGAQALTEALKTNLI----------------------LATLNLSQNKIGDDGAQALAEAFKTNSI--LATLDLSQNKIGDDGAQALAEALKTNSI--LATLDLSQNKIGDDGAQALAEALKTNSI--LATLNLRNNSIWIKGLLAFSEIFKTNSTLTTLSLAKSKIEGTIALVLLKSLETRSTLTTLNLGYKSIEGD-EVQALCEALKTN-SSLINLDLQSN-SIDDNGAQAIAEALKSNSTLTTLKLAVNLIGAN--GGQALSEAL---------KTNSTLTTLDL-QNNLTGDN--GAQALSEALKINATLTTLDLWRNSIGTNGAQALAEALKTNATLTTLYLQDNSIRDNGAFALSEALKINSVLSTLDLWGNSIGDNGAQALFEALKSNSTLTTLDLQNNSISDSGTWALSQALKI-----NSTLTTLDLWRNSI 599          
BLAST of EWM23289.1 vs. NCBI_GenBank
Match: gi|530638838|ref|XP_005306220.1| (PREDICTED: protein NLRC3 [Chrysemys picta bellii])

HSP 1 Score: 66.2402 bits (160), Expect = 2.114e-7
Identity = 125/462 (27.06%), Postives = 182/462 (39.39%), Query Frame = 0
Query:  166 KNVSLSAGNEKPYTFMTRSMLPQLKELVFSRIGLSPANASSMAAILVGPLGSRLVDLDLSHNPLKDEGFHTIFKSLAASMPEPPGSGPRRRRSSSSTAHGLS-------ALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMGGGMAALKSLNVGSNYVDSEGVRALALVMRLG-KLSRLDHLKVDLSGENALSLLAAGWNRDGGAGWEGEREGQAGGDLEKEGCP----------PLRRLDLEKNASLYGQGWAEVVEGGREGGLPASLEALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALPRCACLRELFFANNDL 609
            KN SL AG   P      + L Q+ E+      LS     ++   L+  L     +L L +N  KD     +   L+    +         + S+  A  L+       +L  LDL    +  TG  +   AL+   V  LL L L  N +KE+G   L   L  +H  +LRTL      +GP   + +  A    G   L+ L + SN V   G  ALA  +R+   L+ LD     +S     +L+ A  +  G       RE   G    +EG P           LR LDL  N  LY +G   +    RE       +AL   H +    +  A       +H      + LT LDL E ++  + +     L    +V   LT L L+   +G +G +ALAE L  +RT        L  LD+ G ++G  GA ++  AL     LR L    N L
Sbjct:  616 KNESL-AGMLTPVNCSALAYLLQVSEVCMEETNLSNCLTYNICKSLLSQL-LFCSNLRLDNNKFKDNVMELLGSVLSGKDCQIQKMSLAENQISNKGAKALARSLMVNRSLTVLDLRSNAIGPTGAKALADALKINQV--LLSLNLQNNMIKEDGAKFLAEALLTNH--KLRTLHLQKNSIGPQGAKKIAEALKQNG--NLRELILSSNCVGDTGSVALAEALRVNHSLTTLDLQSNSISNTGVTALIGALRSNRGLISL-NLRENSIG----QEGAPEIANALRANCTLRNLDLAANL-LYDEGVKAIALAMREN------QALMSLHLQWNFIQSKAAKALAQALHS----NTSLTSLDLQENAIGDEGMIA---LAAALKVNTTLTTLCLQVASIGVSGAKALAEALVVNRT--------LTTLDLRGNSIGVAGAKAMANALKVNRSLRVLNLQENSL 1042          
BLAST of EWM23289.1 vs. NCBI_GenBank
Match: gi|1129189753|gb|OLP95148.1| (Protein NLRC3 [Symbiodinium microadriaticum])

HSP 1 Score: 65.0846 bits (157), Expect = 5.426e-7
Identity = 85/353 (24.08%), Postives = 163/353 (46.18%), Query Frame = 0
Query:  267 SALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMGGGMAALKSLNVGSNYVDSEGVRALALVMRLGK-LSRLD--HLKVDLSGENALS------LLAAGWNRDGGAGWEGEREGQAGGDLEKEGCPPLRRLDLEKNASLYGQGWAEVVEGGREGGLPASLE-ALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALPRCACLRELFFANNDL 609
            S+L ++DL +  +   G+ +   AL++   S+L  + LG N + ++G   L   L+ +    L T+  S   +G    + L  A      ++L ++++  N++ ++G +ALA  ++    L+ +D  + ++D  G  AL       ++A    R    G E +   QA  +  K     L  +DL  N  +   G   + E  ++     +++ + N  +    G + LA  L         +  S LT + L   ++ GDN    + L E  ++   LT ++LR N +G  G +ALAE L  +        ++L  +D++G  +GD GA +L +AL + + L  +  ++ND+
Sbjct: 3706 SSLTTIDLRYNGIGVAGVKALAEALKQN--SSLTTIHLGLNAIGDDGAKALAEALKQNS--SLTTIYLSDNAIGADGAKALAEALKQN--SSLTTIDLRYNHIGADGAKALAEALKQNSSLTAIDLSNNRIDDDGAEALKEALKQKVIATSIKRPQAVGKERQENDQALAEALKRN-SSLTTIDLRYNG-IGDDGAKALAEALKQSSSLITIDLSNNYNYMGDDGAQALAEAL---------KQNSSLTTIHLGLNAI-GDN--GAKALAEALKLNSSLTTIDLRYNEIGDDGAKALAEALKLN--------SSLTTIDLSGNRIGDSGAKALAEALKQISSLTTIVLSHNDI 4030          
BLAST of EWM23289.1 vs. NCBI_GenBank
Match: gi|1113403813|gb|OJW66616.1| (hypothetical protein BGO68_01535 [Candidatus Amoebophilus sp. 36-38])

HSP 1 Score: 63.929 bits (154), Expect = 7.601e-7
Identity = 157/630 (24.92%), Postives = 250/630 (39.68%), Query Frame = 0
Query:  142 FQEALVELPASTL---QKQQYHRS----QRQKNVSLSAGNEKPYTFMTRSMLPQ----LKELVFSRIGLSPANASSMAAILVGPLGSRLVDLDLSHNPLKDEGFHTIFKS--LAASMPEPPGSGPRRRRSSSSTAHGLSALQSLDLSHTHLTHTGLGSFLLALRKGCVSNLLVLMLGGNPLKEEGGLVLTAILEGHHLPRLRTLDASACGMGPLATRTLLSAGMGGGMAALKSLNVGSNYVDSEGVRALALVMRLGKLSRLDHLKVDLSGENALSLLAAG--------WNRDGGAGWEGEREGQAGGDLEKEGCPPLRRLDLEKNASLYGQGWAEVVEGGREGGLPASLEALNLAHCKRLGEKGLAGVLAWGRMHGPGRHESRLTCLDLSETSLDGDNVRTQQHLRELWEVFPGLTHLNLRGNRLGWAGGRALAEGLASSRTGGGAKANALVVLDVAGTALGDEGASSLLQALPRCACLRELFFANNDLSPSFWREGRAVEMLGGGNMEALRVLDISKNALGPGFLPSQDSHALSALLARLHVLKMAWTDAGPEDVAALIAGFKGGVAGGEEEKLSGVPLTVLDLAYNTRMGETEVLRLLEFSLSPRMGRLRALSLVGTGMGDAVVTALT 750
            F    +EL A  L     + +HR+    Q  + V+L AG EK      + +  +    L ++ F+ + +          +L+    +R+  L L ++ +  EG H +     +A +      +  R   + +  +  L AL SLDL   ++   G+     AL  G +S+L+ L LG N + + G   L       +L  L +LD     +G +  R L      G +++L SL++  N +   GV++LA    L  L+ L +L+ +  GE  +  L +G        + R    G  G  +  A G+L       L  LDLE N                                 R+G+ G+   LA G +       + LT L+L    +    V+   +          LT LNLR NR+G AG +ALA G  S          AL  LD++   +G  G  +L+        L  L    N +  +       VE L  GN+ AL  LD+S N +G     +  +  LSA L  L +      DAG + +A+      G +A           LT L L YN  +G+     L   +L+     L +L+L G  +GD+   AL 
Sbjct:   71 FSNLPIELQAYILYFLDGKDFHRASLVCQGWRKVALIAGEEKTLDLSKKKLDEKDCQVLLKVPFNSLIIKECQLGDQE-VLILSQATRIKHLALFNSEIGAEGAHALANGNLIALTSLNLTYNNIRDSGAQALASGNLGALTSLDLGSNNIGAAGVQ----ALASGNLSSLISLDLGSNSIGDSGAQALA----NGNLAALISLDLRWNKIGVVGARAL----ANGNLSSLTSLDLQHNSIGPAGVQSLA-NSNLTALTSL-NLQCNKIGEAGVQALVSGKLVVLNSLYLRTTCIGDAG-TQALANGNL-----SALTSLDLEDN---------------------------------RIGDAGVQ-ALANGNL-------ATLTSLNLERNIIKDVGVKALANGN-----LSSLTSLNLRDNRIGSAGAQALANGNLS----------ALTFLDLSNNNIGSAGVEALVS--DNLTALTSLNLWGNSIGDA------EVEALANGNLSALTFLDLSNNNIGSAGAEALANGNLSA-LTSLDLTNNRIGDAGAQGLAS------GNLA----------TLTSLSLRYN-NIGDVGTQALASGNLTA----LASLNLWGNSIGDSGAEALV 593          
The following BLAST results are available for this feature:
BLAST of EWM23289.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585104294|gb|EWM23289.1|0.000e+0100.00Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
gi|672817956|gb|KFH62859.1|1.487e-826.32hypothetical protein MVEG_11384 [Mortierella verti... [more]
gi|530638838|ref|XP_005306220.1|2.114e-727.06PREDICTED: protein NLRC3 [Chrysemys picta bellii][more]
gi|1129189753|gb|OLP95148.1|5.426e-724.08Protein NLRC3 [Symbiodinium microadriaticum][more]
gi|1113403813|gb|OJW66616.1|7.601e-724.92hypothetical protein BGO68_01535 [Candidatus Amoeb... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7399rna7399Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications