rna7395, rna7395 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7395
Unique Name	rna7395
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1429
Alignment location	CM002471.1:478529..479360 -

Link to JBrowse

Properties


Property Name	Value
Product	Cytochrome c oxidase biogenesis protein Cmc1
Orig transcript id	gnl\|cribi\|Naga_100158g16.7793.mrna
Orig protein id	gnl\|cribi\|Naga_100158g16.7793
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:478529..479360 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g16	gene7154	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7395	rna7395-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23297.1	cds7378	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:478529..479360-
coding sequence from alignment at CM002471.1:478529..479360-

mRNA sequence

>rna7395 ID=rna7395|Name=rna7395|organism=Nannochloropsis gaditana|type=mRNA|length=1429bp
ACCACAAGCATCGCCAGCCTGTGTGGCTGCTGCCCTCGAGCTCTGACTTT
TATCCCAAGCACTCTCACGTGTACGGTGCGAAGCTGTCATGATGAGCAGT
TTTGTCGATGCATCCCGAGAAATCTCTTTCACGGAGAGAAATAGAATCGC
GGACTGCACAGAAAAGCTGCATATCGACCTTCCTAAGGCCATCGAGGGAG
GCAATTTTGCTCGATGGGAGGCGTATCGGTGTGCCTTCATCTTTCTTTTA
ATGCTCATAACCTCCCTCTATCTTCAAATTGTATAGTCATGGCAACTAAG
AAAATCGTCAAGCCTCGGGGACAAGAGCCGGATGAGTGGGACACGAAGGT
GGCTTCCGAGCTTATGAACCTTGAGAACAACAACCCCGAGTGGAAGGCCG
ACCTGAAGGACCTGTACATCACCGCGGCTAAGGAGGTGGACGTCGGGAAG
ACCCAAGCGATCGTCGTCTTCGTCCCATACAGGCTCTTGAAGGCCTACCA
CAAGATCCAACAGCGTCTCGTCCGAGAGCTGGAGAAAAAGTTTAGCGGCT
CGCACGTGGTGGTGATCGCGCAACGCACCATCCTGGGCAAGTCTTACGGA
CGTTCCACCAAGACCAAGGGACCCCGACCCCGGTCGCGCACACTGACGGC
GGTACAAGACGCGATCCTGGAGGACCTGGTCTACCCCACCGAGATCGTGG
GGAAGCGGACGCGCTGCAAGGTGGACGGCACGAAGACCCTCAAGGTCTTC
CTGGACAACAAGGATCAGATGAACGTGGATTACAAGCTCGACACCTTCAA
GGAGGTGTACAAGAAGCTCACCAATAAGGAGGTGGAATTCACCTTCTTCG
TCAAGCAGACAGAGGCCTGAGGGGTGTTGGGGGGGAGCGGGCGGAAAGGG
GAGTCACGCTCTTGGCTCGCGAGGGTCTGGGCGAGAGGGAGTGTGGGCTG
AGCGCTGCCAGTAGAGGCAGGCCGTAAGAATACTGCAAAAGAAAAAACTC
GCGAGTGAAAAGAAAGAGGGCAAGAGCTGGGGGGGGGATCGGGGACCGGC
CTCGGCGTGCCTTCATTTTTGGTTTTCGGATCGAGGTGGTTTTTTTAAGC
TTCTTCGGCGAGACTGAGCCCTCGCGTCTGCTTCCACTCCTCAAACTTGC
TCTCCGACGTATACTGACTCAAGCACGCGTTCACTGAGAAAGATGGGGGG
AGAGCAAGGAAGGTGATGAGGAAGCCGGGAATGTGGTTGCAGAGGGGGGC
CCCGTCAGAGGGCAGAGAGGACAAGGGTCTCGGCCACGACTTTGCTAAAA
GAATAAAGATTGCAATATACAAGTCAGAGGCGGTACCGACATAACTTTGC
CAGGCAACTTCCGACGTGAACGACGAAAATTGTGTGAGTGCAGGAACCTA
GCCCGATTACAAGGATCTGCCTAGCCTCC

protein sequence of rna7395

>rna7395-protein ID=rna7395-protein|Name=rna7395|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPM
AAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLA
EEA

mRNA from alignment at CM002471.1:478529..479360-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7395 ID=rna7395|Name=rna7395|organism=Nannochloropsis gaditana|type=mRNA|length=832bp|location=Sequence derived from alignment at CM002471.1:478529..479360- (Nannochloropsis gaditana)
TATTTCGGGGGCTTCGTCATGTGCTGCTCATAATTCAGCCTTAATGCTCA
CAGCAACCTCTCCGCATCTCTCAGACATACGTCATGAGCGCGGGCACTCC
TCCTACCATTGTCCCGGACCCTGATTACAGAGATGGCTCAAGGGAGGGAC
GATTGCGTTTCAGCAAGCGTGCGGAACAGGTAAGATGCTCGAAGCCAGAC
CTACATGCGTGGCAACCATGCAATTGCTTGATCGCGATGCCCTCAAGGTG
CCTCCTCAGACCCCCCCCCGCCCCCTTTTTTCTCCTCTGTCAGCATCTCC
GGGACGAATTAGCCCTGCACGCACGCAAACAATGCCAGGAGCCGATGGCA
GCATTTGCAGCGTGTGCCAAAGAGAATGGGATGTTCGTGATTTTCAAGTG
CCGGGCTCTTAATAACGCCAGTAGGTGCTTGGGGGGGGCATGGAGGCTAG
GCAGATCCTTGTAATCGGGCTAGGTTCCTGCACTCACACAATTTTCGTCG
TTCACGTCGGAAGTTGCCTGGCAAAGTTATGTCGGTACCGCCTCTGACTT
GTATATTGCAATCTTTATTCTTTTAGCAAAGTCGTGGCCGAGACCCTTGT
CCTCTCTGCCCTCTGACGGGGCCCCCCTCTGCAACCACATTCCCGGCTTC
CTCATCACCTTCCTTGCTCTCCCCCCATCTTTCTCAGTGAACGCGTGCTT
GAGTCAGTATACGTCGGAGAGCAAGTTTGAGGAGTGGAAGCAGACGCGAG
GGCTCAGTCTCGCCGAAGAAGCTTAAAAAAACCACCTCGATCCGAAAACC
AAAAATGAAGGCACGCCGAGGCCGGTCCCCGA

Coding sequence (CDS) from alignment at CM002471.1:478529..479360-

>rna7395 ID=rna7395|Name=rna7395|organism=Nannochloropsis gaditana|type=CDS|length=936bp|location=Sequence derived from alignment at CM002471.1:478529..479360- (Nannochloropsis gaditana)
TGAACGCGTGCTTGAGTCAGTATACGTCGGAGAGCAAGTTTGAGGAGTGG
AAGCAGACGCGAGGGCTCAGTCTCGCCGAAGAAGCTTAACATCTCCGGGA
CGAATTAGCCCTGCACGCACGCAAACAATGCCAGGAGCCGATGGCAGCAT
TTGCAGCGTGTGCCAAAGAGAATGGGATGTTCGTGATTTTCAAGTGCCGG
GCTCTTAATAACGCCAATGAGCGCGGGCACTCCTCCTACCATTGTCCCGG
ACCCTGATTACAGAGATGGCTCAAGGGAGGGACGATTGCGTTTCAGCAAG
CGTGCGGAACAGTGAACGCGTGCTTGAGTCAGTATACGTCGGAGAGCAAG
TTTGAGGAGTGGAAGCAGACGCGAGGGCTCAGTCTCGCCGAAGAAGCTTA
ACATCTCCGGGACGAATTAGCCCTGCACGCACGCAAACAATGCCAGGAGC
CGATGGCAGCATTTGCAGCGTGTGCCAAAGAGAATGGGATGTTCGTGATT
TTCAAGTGCCGGGCTCTTAATAACGCCAATGAGCGCGGGCACTCCTCCTA
CCATTGTCCCGGACCCTGATTACAGAGATGGCTCAAGGGAGGGACGATTG
CGTTTCAGCAAGCGTGCGGAACAGTGAACGCGTGCTTGAGTCAGTATACG
TCGGAGAGCAAGTTTGAGGAGTGGAAGCAGACGCGAGGGCTCAGTCTCGC
CGAAGAAGCTTAACATCTCCGGGACGAATTAGCCCTGCACGCACGCAAAC
AATGCCAGGAGCCGATGGCAGCATTTGCAGCGTGTGCCAAAGAGAATGGG
ATGTTCGTGATTTTCAAGTGCCGGGCTCTTAATAACGCCAATGAGCGCGG
GCACTCCTCCTACCATTGTCCCGGACCCTGATTACAGAGATGGCTCAAGG
GAGGGACGATTGCGTTTCAGCAAGCGTGCGGAACAG

Synonyms

Publications