EWM23297.1, cds7378 (CDS) Nannochloropsis gaditana

Overview
NameEWM23297.1
Unique Namecds7378
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:479182..479277 -
Alignment locationCM002471.1:478941..479067 -
Alignment locationCM002471.1:478585..478673 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23297.1
ProductCytochrome c oxidase biogenesis protein Cmc1
Orig transcript idgnl|cribi|Naga_100158g16.7793.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:479182..479277 -
CM002471.1supercontigCM002471.1:478941..479067 -
CM002471.1supercontigCM002471.1:478585..478673 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like
Homology
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|585104302|gb|EWM23297.1| (Cytochrome c oxidase biogenesis protein Cmc1 [Nannochloropsis gaditana])

HSP 1 Score: 216.853 bits (551), Expect = 1.449e-71
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEEA 103
            MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEEA
Sbjct:    1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEEA 103          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|553189006|ref|XP_005854913.1| (hypothetical protein NGA_0393000, partial [Nannochloropsis gaditana CCMP526] >gi|422294157|gb|EKU21457.1| hypothetical protein NGA_0393000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 157.918 bits (398), Expect = 1.172e-48
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query:    1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNA 74
            MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNA
Sbjct:    1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNA 74          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|299470017|emb|CBN79194.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 88.1965 bits (217), Expect = 9.919e-21
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0
Query:   16 RDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEE 102
            +DG R  RL +SKRAE  LR+EL   A K+C + +A FAACA+E GM V+F CR  N  MN+CL+Q+T+E  F+ +K  R + L  E
Sbjct:    5 KDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRE 91          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|698807040|ref|XP_009836549.1| (hypothetical protein H257_11348 [Aphanomyces astaci] >gi|574108529|gb|ETV74036.1| hypothetical protein H257_11348 [Aphanomyces astaci])

HSP 1 Score: 73.559 bits (179), Expect = 8.968e-15
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFE 89
            MS    PT+    + +   R GRL++S +AE  L+ EL   A  +C++  +AF  C+KE+G+ V+FKCR  N+A+N CL +YTS+   E
Sbjct:    1 MSTEATPTV---DEAKTEWRSGRLQWSNQAEHKLKQELNATALAKCRDRTSAFHECSKEHGLMVVFKCREQNHALNECLHEYTSKEALE 86          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|673039875|ref|XP_008873898.1| (hypothetical protein H310_09575 [Aphanomyces invadans] >gi|574470679|gb|ETV97689.1| hypothetical protein H310_09575 [Aphanomyces invadans])

HSP 1 Score: 70.8626 bits (172), Expect = 1.043e-13
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0
Query:   20 REGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFE 89
            R GRL++S +AE  L+ EL   A  +C    +AF  C+KE+G+ V+FKCR  N+A+N CL QYT++   E
Sbjct:   24 RSGRLQWSNQAEHKLKQELNATALAKCHHLTSAFHECSKEHGLMVVFKCREQNHALNECLHQYTNKEALE 93          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|675192561|ref|XP_008905165.1| (hypothetical protein PPTG_11755 [Phytophthora parasitica INRA-310] >gi|566024468|gb|ETI47379.1| hypothetical protein F443_08389 [Phytophthora parasitica P1569] >gi|567961780|gb|ETK87317.1| hypothetical protein L915_08221 [Phytophthora parasitica] >gi|567990516|gb|ETL40745.1| hypothetical protein L916_08145 [Phytophthora parasitica] >gi|568019760|gb|ETL93901.1| hypothetical protein L917_08043 [Phytophthora parasitica] >gi|568050175|gb|ETM47132.1| hypothetical protein L914_08107 [Phytophthora parasitica] >gi|568050185|gb|ETM47141.1| hypothetical protein L914_08106 [Phytophthora parasitica] >gi|568094556|gb|ETN09332.1| hypothetical protein PPTG_11755 [Phytophthora parasitica INRA-310] >gi|570328152|gb|ETO76100.1| hypothetical protein F444_08445 [Phytophthora parasitica P1976] >gi|570951918|gb|ETP17175.1| hypothetical protein F441_08371 [Phytophthora parasitica CJ01A1] >gi|570986119|gb|ETP45229.1| hypothetical protein F442_08327 [Phytophthora parasitica P10297] >gi|970628227|gb|KUF75910.1| hypothetical protein AM587_10008700 [Phytophthora nicotianae] >gi|970660624|gb|KUF98155.1| Vacuolar protein sorting-associated protein 27 [Phytophthora nicotianae])

HSP 1 Score: 70.4774 bits (171), Expect = 1.053e-13
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0
Query:   20 REGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEE 102
            R  RL +S +AE  L+ EL+  A  +C+     FA CAK NG+ V FKCR  N A+NACL QYT++ +FE +++ R   +  E
Sbjct:   15 RSSRLSWSNQAEHKLKQELSDIAIAKCRSVSEKFAECAKANGLMVAFKCRDHNKALNACLHQYTNDEQFEIYRKRREKEMLHE 97          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|397575946|gb|EJK49979.1| (hypothetical protein THAOC_31089 [Thalassiosira oceanica])

HSP 1 Score: 69.707 bits (169), Expect = 2.155e-13
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0
Query:   11 PDPD-YRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEW 91
            P+P   +D  R+GRL F   AE  +R E    A ++C E + AF  CA++NG+ V+F+CR LN  +N C+ ++ S   FE +
Sbjct:    9 PNPAAIKDEGRDGRLSFRNFAEHKMRREFKDAAVEKCSEHLRAFGQCAQDNGLMVVFRCRELNKKINECMHEHNSHEAFERY 90          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|1173935819|gb|OQR86874.1| (hypothetical protein ACHHYP_09756 [Achlya hypogyna])

HSP 1 Score: 67.0106 bits (162), Expect = 2.971e-12
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0
Query:   14 DYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTR 95
            D ++  R  RL++SK+AE  L  EL   A ++C     AF  C+ E+G+ V+FKCR  N  +NACL +YT+   F  +K +R
Sbjct:   15 DQKNEWRGSRLQWSKQAEHKLHQELNAIALEKCYAKTKAFVDCSHEHGLLVVFKCRQHNADLNACLHEYTNPEAFAAFKASR 96          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|1173945206|gb|OQR93864.1| (hypothetical protein THRCLA_08325 [Thraustotheca clavata])

HSP 1 Score: 67.781 bits (164), Expect = 3.303e-11
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   20 REGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSL 99
            R  RL++S +AE  L  EL   A K+C +   AF  C+ E+G+ V+FKCR  N  +NACL +YT+   +E++K ++  +L
Sbjct:  241 RGSRLQWSNQAEHKLHQELNTIALKKCYDKTKAFVDCSHEHGLLVVFKCRQQNADLNACLHEYTNPEAYEKFKASKTEAL 320          
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|813177397|ref|XP_012205168.1| (hypothetical protein SPRG_10817 [Saprolegnia parasitica CBS 223.65] >gi|641529881|gb|KDO24029.1| hypothetical protein SPRG_10817 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.1586 bits (152), Expect = 8.344e-11
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 0
Query:    1 MSAGTPPTIVPDPDYRDGSREG-RLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTR 95
            MS        P+ + +     G RL++SK+AE  L  EL   A ++C     AF  C+ E+G+ V++KCR  N  +NACL +YT+   F  +K +R
Sbjct:    1 MSTTNAAEATPNRETQKAEWRGSRLQWSKQAEHKLHQELNSIALEKCYAKTKAFVDCSHEHGLLVVWKCRQHNADLNACLHEYTNPEAFAAFKASR 96          
The following BLAST results are available for this feature:
BLAST of EWM23297.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104302|gb|EWM23297.1|1.449e-71100.00Cytochrome c oxidase biogenesis protein Cmc1 [Nann... [more]
gi|553189006|ref|XP_005854913.1|1.172e-48100.00hypothetical protein NGA_0393000, partial [Nannoch... [more]
gi|299470017|emb|CBN79194.1|9.919e-2149.43conserved unknown protein [Ectocarpus siliculosus][more]
gi|698807040|ref|XP_009836549.1|8.968e-1540.45hypothetical protein H257_11348 [Aphanomyces astac... [more]
gi|673039875|ref|XP_008873898.1|1.043e-1345.71hypothetical protein H310_09575 [Aphanomyces invad... [more]
gi|675192561|ref|XP_008905165.1|1.053e-1343.37hypothetical protein PPTG_11755 [Phytophthora para... [more]
gi|397575946|gb|EJK49979.1|2.155e-1339.02hypothetical protein THAOC_31089 [Thalassiosira oc... [more]
gi|1173935819|gb|OQR86874.1|2.971e-1240.24hypothetical protein ACHHYP_09756 [Achlya hypogyna... [more]
gi|1173945206|gb|OQR93864.1|3.303e-1140.00hypothetical protein THRCLA_08325 [Thraustotheca c... [more]
gi|813177397|ref|XP_012205168.1|8.344e-1135.42hypothetical protein SPRG_10817 [Saprolegnia paras... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7395rna7395Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications