EWM23297.1, cds7378 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|585104302|gb|EWM23297.1| (Cytochrome c oxidase biogenesis protein Cmc1 [Nannochloropsis gaditana]) HSP 1 Score: 216.853 bits (551), Expect = 1.449e-71 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 Query: 1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEEA 103 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEEA Sbjct: 1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEEA 103
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|553189006|ref|XP_005854913.1| (hypothetical protein NGA_0393000, partial [Nannochloropsis gaditana CCMP526] >gi|422294157|gb|EKU21457.1| hypothetical protein NGA_0393000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 157.918 bits (398), Expect = 1.172e-48 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 Query: 1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNA 74 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNA Sbjct: 1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNA 74
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|299470017|emb|CBN79194.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 88.1965 bits (217), Expect = 9.919e-21 Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0 Query: 16 RDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEE 102 +DG R RL +SKRAE LR+EL A K+C + +A FAACA+E GM V+F CR N MN+CL+Q+T+E F+ +K R + L E Sbjct: 5 KDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRE 91
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|698807040|ref|XP_009836549.1| (hypothetical protein H257_11348 [Aphanomyces astaci] >gi|574108529|gb|ETV74036.1| hypothetical protein H257_11348 [Aphanomyces astaci]) HSP 1 Score: 73.559 bits (179), Expect = 8.968e-15 Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 0 Query: 1 MSAGTPPTIVPDPDYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFE 89 MS PT+ + + R GRL++S +AE L+ EL A +C++ +AF C+KE+G+ V+FKCR N+A+N CL +YTS+ E Sbjct: 1 MSTEATPTV---DEAKTEWRSGRLQWSNQAEHKLKQELNATALAKCRDRTSAFHECSKEHGLMVVFKCREQNHALNECLHEYTSKEALE 86
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|673039875|ref|XP_008873898.1| (hypothetical protein H310_09575 [Aphanomyces invadans] >gi|574470679|gb|ETV97689.1| hypothetical protein H310_09575 [Aphanomyces invadans]) HSP 1 Score: 70.8626 bits (172), Expect = 1.043e-13 Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 Query: 20 REGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFE 89 R GRL++S +AE L+ EL A +C +AF C+KE+G+ V+FKCR N+A+N CL QYT++ E Sbjct: 24 RSGRLQWSNQAEHKLKQELNATALAKCHHLTSAFHECSKEHGLMVVFKCREQNHALNECLHQYTNKEALE 93
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|675192561|ref|XP_008905165.1| (hypothetical protein PPTG_11755 [Phytophthora parasitica INRA-310] >gi|566024468|gb|ETI47379.1| hypothetical protein F443_08389 [Phytophthora parasitica P1569] >gi|567961780|gb|ETK87317.1| hypothetical protein L915_08221 [Phytophthora parasitica] >gi|567990516|gb|ETL40745.1| hypothetical protein L916_08145 [Phytophthora parasitica] >gi|568019760|gb|ETL93901.1| hypothetical protein L917_08043 [Phytophthora parasitica] >gi|568050175|gb|ETM47132.1| hypothetical protein L914_08107 [Phytophthora parasitica] >gi|568050185|gb|ETM47141.1| hypothetical protein L914_08106 [Phytophthora parasitica] >gi|568094556|gb|ETN09332.1| hypothetical protein PPTG_11755 [Phytophthora parasitica INRA-310] >gi|570328152|gb|ETO76100.1| hypothetical protein F444_08445 [Phytophthora parasitica P1976] >gi|570951918|gb|ETP17175.1| hypothetical protein F441_08371 [Phytophthora parasitica CJ01A1] >gi|570986119|gb|ETP45229.1| hypothetical protein F442_08327 [Phytophthora parasitica P10297] >gi|970628227|gb|KUF75910.1| hypothetical protein AM587_10008700 [Phytophthora nicotianae] >gi|970660624|gb|KUF98155.1| Vacuolar protein sorting-associated protein 27 [Phytophthora nicotianae]) HSP 1 Score: 70.4774 bits (171), Expect = 1.053e-13 Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0 Query: 20 REGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEE 102 R RL +S +AE L+ EL+ A +C+ FA CAK NG+ V FKCR N A+NACL QYT++ +FE +++ R + E Sbjct: 15 RSSRLSWSNQAEHKLKQELSDIAIAKCRSVSEKFAECAKANGLMVAFKCRDHNKALNACLHQYTNDEQFEIYRKRREKEMLHE 97
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|397575946|gb|EJK49979.1| (hypothetical protein THAOC_31089 [Thalassiosira oceanica]) HSP 1 Score: 69.707 bits (169), Expect = 2.155e-13 Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0 Query: 11 PDPD-YRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEW 91 P+P +D R+GRL F AE +R E A ++C E + AF CA++NG+ V+F+CR LN +N C+ ++ S FE + Sbjct: 9 PNPAAIKDEGRDGRLSFRNFAEHKMRREFKDAAVEKCSEHLRAFGQCAQDNGLMVVFRCRELNKKINECMHEHNSHEAFERY 90
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|1173935819|gb|OQR86874.1| (hypothetical protein ACHHYP_09756 [Achlya hypogyna]) HSP 1 Score: 67.0106 bits (162), Expect = 2.971e-12 Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0 Query: 14 DYRDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTR 95 D ++ R RL++SK+AE L EL A ++C AF C+ E+G+ V+FKCR N +NACL +YT+ F +K +R Sbjct: 15 DQKNEWRGSRLQWSKQAEHKLHQELNAIALEKCYAKTKAFVDCSHEHGLLVVFKCRQHNADLNACLHEYTNPEAFAAFKASR 96
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|1173945206|gb|OQR93864.1| (hypothetical protein THRCLA_08325 [Thraustotheca clavata]) HSP 1 Score: 67.781 bits (164), Expect = 3.303e-11 Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0 Query: 20 REGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSL 99 R RL++S +AE L EL A K+C + AF C+ E+G+ V+FKCR N +NACL +YT+ +E++K ++ +L Sbjct: 241 RGSRLQWSNQAEHKLHQELNTIALKKCYDKTKAFVDCSHEHGLLVVFKCRQQNADLNACLHEYTNPEAYEKFKASKTEAL 320
BLAST of EWM23297.1 vs. NCBI_GenBank
Match: gi|813177397|ref|XP_012205168.1| (hypothetical protein SPRG_10817 [Saprolegnia parasitica CBS 223.65] >gi|641529881|gb|KDO24029.1| hypothetical protein SPRG_10817 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 63.1586 bits (152), Expect = 8.344e-11 Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 0 Query: 1 MSAGTPPTIVPDPDYRDGSREG-RLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTR 95 MS P+ + + G RL++SK+AE L EL A ++C AF C+ E+G+ V++KCR N +NACL +YT+ F +K +R Sbjct: 1 MSTTNAAEATPNRETQKAEWRGSRLQWSKQAEHKLHQELNSIALEKCYAKTKAFVDCSHEHGLLVVWKCRQHNADLNACLHEYTNPEAFAAFKASR 96 The following BLAST results are available for this feature:
BLAST of EWM23297.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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