rna7394, rna7394 (mRNA) Nannochloropsis gaditana

Overview
Namerna7394
Unique Namerna7394
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length288
Alignment locationCM002471.1:476700..478919 +

Link to JBrowse

Properties
Property NameValue
Product40s ribosomal protein s7
Orig transcript idgnl|cribi|Naga_100158g17.7783.mrna
Orig protein idgnl|cribi|Naga_100158g17.7783
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:476700..478919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100158g17gene7153Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7394rna7394-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23287.1cds7377Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7394 ID=rna7394|Name=rna7394|organism=Nannochloropsis gaditana|type=mRNA|length=288bp
ATGTCTGCATCCTTTCTAGAGAAAAGTGATGACAGTCATATAGCTGACTC
AAGATGTGAGAGAATTGTGCTGTGGCACAGGTCTCTCTCAGTGCGAGATC
ATACAGCTAGCCTTCAAAGTTCCCTGATTTTTTTCGAGGAGACGCGATAC
GCAGCGCGGTTCTACGACTGTCCACAGCTTTGCCAAGCATTCTTGGAGGT
ATTGGCGCAGCTATGGTGTCAAGATGGTGTTAAACCGCGTGGAACAACAC
CCGTAATCTGGTCAATTGCTCTTCCGAACTCTGTATAA
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protein sequence of rna7394

>rna7394-protein ID=rna7394-protein|Name=rna7394|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MGGVSVCLHLSFNAHNLPLSSNCIVMATKKIVKPRGQEPDEWDTKVASEL
MNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQ
RLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDA
ILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYK
KLTNKEVEFTFFVKQTEA
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mRNA from alignment at CM002471.1:476700..478919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7394 ID=rna7394|Name=rna7394|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp|location=Sequence derived from alignment at CM002471.1:476700..478919+ (Nannochloropsis gaditana)
ACCACAAGCATCGCCAGCCTGTGTGGCTGCTGCCCTCGAGCTCTGACTTT
TATCCCAAGCACTCTCACGTGTACGGTGCGAAGCTGTCATGATGAGCAGT
TTTGTCGATGCATCCCGAGAAATCTCTTTCACGGAGAGAAATAGAATCGC
GGACTGCACAGAAAAGCTGCATATCGACCTTCCTAAGGCCATCGAGGGAG
GCAATTTTGCTCGATGGGAGGCGTATCGGTGTGCCTTCATCTTTCTTTTA
ATGCTCATAACCTCCCTCTATCTTCAAATTGTATAGTCATGGCAACTAAG
AAAATCGTCAAGCCTCGGGGACAAGAGCCGGATGAGTGGGACACGAAGGT
GGCTTCCGAGCTTATGAACCTtgaggtagggggggggggagaaggagaag
aacgaAAGAGAATGAGGGTTGGGGTTGGTGAAATTTGTAGCATAGCAAGA
AAGTAGATGCCCTGAGTCATTTTCACGTAGGCTGCAGACGGCCTGGTGGT
CTGTTGTGTGGGAAAAAAATCATTTCTTTGACTGTCGACGATGtaaaaaa
gaagggggggaattGAGGCTAGGGTTGAAATTGCCTGTGCCAAAGGAACC
CGTGGGGACGTGGGGTGATAGCGTTCAATTAGATAGCTAGAAAAATTAAG
TGGACAGGGGTTGGGGGGATGTTTGGAGGGCATCAAGAGACTGGAATGTG
GCTGCCATGTATATAGGGTCAGGCAAGGTACCGTCACACTGGAGAAGGGT
TCGGTCTACCAGGCCTTCTAGATGcccaaaaaaaggaaaggaggaacgct
tccacctcttcgccTCCAGTCTGACGTCTCATTTCCCTCCGGCAGAACAA
CAACCCCGAGTGGAAGGCCGACCTGAAGGACCTGTACATCACCGCGGCta
aggaggtggacgtcgGGAAGACCCAAGCGATCGTCGTCTTCGTCCCATAC
AGGCTCTTGAAGGCCTACCACAAGATCCAACAGCGTCTCGTCCGAGAGCT
GGAGAAAAAGTTTaggtaagggaggaaagggagggcggtacAGGGTGTGA
GCCGGACAGGATACAGCGGACCCTGCGGAGGAGTCATGGGGGCCCTCCGT
CACGGGCCCTTTTCGTCTCCGGCACGATCCTGGCCTTAACTCATACCGTC
CATACTCCcatcaccccctccctccctccctccctccagcggCTCGCACG
TGGTGGTGATCGCGCAACGCACCATCCTGGGCAAGTCTTACGGACGTTCC
ACCAAGACCAAGGGACCCCGACCCCGGTCGCGCACACTGACGGCGGTACA
AGACGCGATCCTGGAGGACCTGGTCTACCCCACCGAGATCGTGGGGAAGC
GGACGCGCTGCAAGGTGGACGGCACGAAGACCCTCAAGGTCTTCCTGGAC
AACAAGGATCAGGTAGGGCGCaatggaagagaggggtcGGACTGAAATCA
GTGCCAGGGTGTTCCCCTCCCTATCCGTAATGTCCGaggccctcctttgc
ccttcGTTGCCGCGGTACACTTGTTCCCCCCTCACGGccgctcccacgcc
tccGGACAGATGAACGTGGATTACAAGCTCGACACCTTCAAGGAGGTGTA
CAAGAAGCTCACCAATAAGGAGGTGGAATTCACCTTCTTCGTCAAGCAGA
CAGAGGCCTGAGGGGTgttgggggggagcgggcggaaaggggagtCACGC
TCTTGGCTCGCGAGGGTCTGGGCGAGAGGGAGTGTGGGCTGAGCGCTGCC
AGTAGAGGCAGGCCGTAAGAATACTGCAAAAGAAAAAACTCGCGagtgaa
aagaaagagggcaagagctgggggggggatcggggACCGGCCTCGGCGTG
CCTTCATTTTTGGTTTTCGGATCGAGGTGGTTTTTTTAAGCTTCTTCGGC
GAGACTGAGCCCTCGCGTCTGCTTCCACTCCTCAAACTTGCTCTCCGACG
TATACTGACTCAAGCACGCGTTCACTGAGAAAGATggggggagagcaagg
aaggtgatgaggaagcCGGGAATGTGGTTGCAGAGGGGGGCCCCGTcaga
gggcagagaggacaAGGGTCTCGGCCACGACTTTGCTAAAAGAATAAAGA
TTGCAATATACAAGTCAGAGGCGGTACCGACATAACTTTGCCAGGCAACT
TCCGACGTGAACGACGAAAATTGTGTGAGTGCAGGAACCTAGCCCGATTA
CAAGGATCTGCCTagcctcc
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Coding sequence (CDS) from alignment at CM002471.1:476700..478919+

>rna7394 ID=rna7394|Name=rna7394|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002471.1:476700..478919+ (Nannochloropsis gaditana)
ATGGGAGGCGTATCGGTGTGCCTTCATCTTTCTTTTAATGCTCATAACCT
CCCTCTATCTTCAAATTGTATAGTCATGGCAACTAAGAAAATCGTCAAGC
CTCGGGGACAAGAGCCGGATGAGTGGGACACGAAGGTGGCTTCCGAGCTT
ATGAACCTtgagAACAACAACCCCGAGTGGAAGGCCGACCTGAAGGACCT
GTACATCACCGCGGCtaaggaggtggacgtcgGGAAGACCCAAGCGATCG
TCGTCTTCGTCCCATACAGGCTCTTGAAGGCCTACCACAAGATCCAACAG
CGTCTCGTCCGAGAGCTGGAGAAAAAGTTTagcggCTCGCACGTGGTGGT
GATCGCGCAACGCACCATCCTGGGCAAGTCTTACGGACGTTCCACCAAGA
CCAAGGGACCCCGACCCCGGTCGCGCACACTGACGGCGGTACAAGACGCG
ATCCTGGAGGACCTGGTCTACCCCACCGAGATCGTGGGGAAGCGGACGCG
CTGCAAGGTGGACGGCACGAAGACCCTCAAGGTCTTCCTGGACAACAAGG
ATCAGATGAACGTGGATTACAAGCTCGACACCTTCAAGGAGGTGTACAAG
AAGCTCACCAATAAGGAGGTGGAATTCACCTTCTTCGTCAAGCAGACAGA
GGCCTGAATGGGAGGCGTATCGGTGTGCCTTCATCTTTCTTTTAATGCTC
ATAACCTCCCTCTATCTTCAAATTGTATAGTCATGGCAACTAAGAAAATC
GTCAAGCCTCGGGGACAAGAGCCGGATGAGTGGGACACGAAGGTGGCTTC
CGAGCTTATGAACCTtgagAACAACAACCCCGAGTGGAAGGCCGACCTGA
AGGACCTGTACATCACCGCGGCtaaggaggtggacgtcgGGAAGACCCAA
GCGATCGTCGTCTTCGTCCCATACAGGCTCTTGAAGGCCTACCACAAGAT
CCAACAGCGTCTCGTCCGAGAGCTGGAGAAAAAGTTTagcggCTCGCACG
TGGTGGTGATCGCGCAACGCACCATCCTGGGCAAGTCTTACGGACGTTCC
ACCAAGACCAAGGGACCCCGACCCCGGTCGCGCACACTGACGGCGGTACA
AGACGCGATCCTGGAGGACCTGGTCTACCCCACCGAGATCGTGGGGAAGC
GGACGCGCTGCAAGGTGGACGGCACGAAGACCCTCAAGGTCTTCCTGGAC
AACAAGGATCAGATGAACGTGGATTACAAGCTCGACACCTTCAAGGAGGT
GTACAAGAAGCTCACCAATAAGGAGGTGGAATTCACCTTCTTCGTCAAGC
AGACAGAGGCCTGAATGGGAGGCGTATCGGTGTGCCTTCATCTTTCTTTT
AATGCTCATAACCTCCCTCTATCTTCAAATTGTATAGTCATGGCAACTAA
GAAAATCGTCAAGCCTCGGGGACAAGAGCCGGATGAGTGGGACACGAAGG
TGGCTTCCGAGCTTATGAACCTtgagAACAACAACCCCGAGTGGAAGGCC
GACCTGAAGGACCTGTACATCACCGCGGCtaaggaggtggacgtcgGGAA
GACCCAAGCGATCGTCGTCTTCGTCCCATACAGGCTCTTGAAGGCCTACC
ACAAGATCCAACAGCGTCTCGTCCGAGAGCTGGAGAAAAAGTTTagcggC
TCGCACGTGGTGGTGATCGCGCAACGCACCATCCTGGGCAAGTCTTACGG
ACGTTCCACCAAGACCAAGGGACCCCGACCCCGGTCGCGCACACTGACGG
CGGTACAAGACGCGATCCTGGAGGACCTGGTCTACCCCACCGAGATCGTG
GGGAAGCGGACGCGCTGCAAGGTGGACGGCACGAAGACCCTCAAGGTCTT
CCTGGACAACAAGGATCAGATGAACGTGGATTACAAGCTCGACACCTTCA
AGGAGGTGTACAAGAAGCTCACCAATAAGGAGGTGGAATTCACCTTCTTC
GTCAAGCAGACAGAGGCCTGAATGGGAGGCGTATCGGTGTGCCTTCATCT
TTCTTTTAATGCTCATAACCTCCCTCTATCTTCAAATTGTATAGTCATGG
CAACTAAGAAAATCGTCAAGCCTCGGGGACAAGAGCCGGATGAGTGGGAC
ACGAAGGTGGCTTCCGAGCTTATGAACCTtgagAACAACAACCCCGAGTG
GAAGGCCGACCTGAAGGACCTGTACATCACCGCGGCtaaggaggtggacg
tcgGGAAGACCCAAGCGATCGTCGTCTTCGTCCCATACAGGCTCTTGAAG
GCCTACCACAAGATCCAACAGCGTCTCGTCCGAGAGCTGGAGAAAAAGTT
TagcggCTCGCACGTGGTGGTGATCGCGCAACGCACCATCCTGGGCAAGT
CTTACGGACGTTCCACCAAGACCAAGGGACCCCGACCCCGGTCGCGCACA
CTGACGGCGGTACAAGACGCGATCCTGGAGGACCTGGTCTACCCCACCGA
GATCGTGGGGAAGCGGACGCGCTGCAAGGTGGACGGCACGAAGACCCTCA
AGGTCTTCCTGGACAACAAGGATCAGATGAACGTGGATTACAAGCTCGAC
ACCTTCAAGGAGGTGTACAAGAAGCTCACCAATAAGGAGGTGGAATTCAC
CTTCTTCGTCAAGCAGACAGAGGCCTGA
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Synonyms
Publications