EWM23287.1, cds7377 (CDS) Nannochloropsis gaditana

Overview
NameEWM23287.1
Unique Namecds7377
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:476913..477074 +
Alignment locationCM002471.1:477545..477714 +
Alignment locationCM002471.1:477889..478111 +
Alignment locationCM002471.1:478259..478360 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23287.1
Product40s ribosomal protein s7
Orig transcript idgnl|cribi|Naga_100158g17.7783.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:476913..477074 +
CM002471.1supercontigCM002471.1:477545..477714 +
CM002471.1supercontigCM002471.1:477889..478111 +
CM002471.1supercontigCM002471.1:478259..478360 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000554Ribosomal_S7e
Homology
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|585104292|gb|EWM23287.1| (40s ribosomal protein s7 [Nannochloropsis gaditana])

HSP 1 Score: 451.825 bits (1161), Expect = 8.963e-161
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:    1 MGGVSVCLHLSFNAHNLPLSSNCIVMATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA 218
            MGGVSVCLHLSFNAHNLPLSSNCIVMATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA
Sbjct:    1 MGGVSVCLHLSFNAHNLPLSSNCIVMATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA 218          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|553188974|ref|XP_005854904.1| (small subunit ribosomal protein S7e [Nannochloropsis gaditana CCMP526] >gi|422294148|gb|EKU21448.1| small subunit ribosomal protein S7e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 395.586 bits (1015), Expect = 5.415e-139
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:   26 MATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA 218
            MATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA
Sbjct:    1 MATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA 193          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|553183926|ref|XP_005853994.1| (small subunit ribosomal protein S7e [Nannochloropsis gaditana CCMP526] >gi|422295064|gb|EKU22363.1| small subunit ribosomal protein S7e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 335.88 bits (860), Expect = 1.215e-115
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0
Query:   54 ENNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA 218
            +NNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA
Sbjct:    7 KNNNPEWKADLKDLYITAAKEVDVGKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQTEA 171          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|669165028|ref|XP_008618076.1| (40S ribosomal protein S7 [Saprolegnia diclina VS20] >gi|813189935|ref|XP_012207567.1| 40S ribosomal protein S7 [Saprolegnia parasitica CBS 223.65] >gi|530730186|gb|EQC28428.1| 40S ribosomal protein S7 [Saprolegnia diclina VS20] >gi|641527480|gb|KDO21767.1| 40S ribosomal protein S7 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 275.789 bits (704), Expect = 1.469e-91
Identity = 137/191 (71.73%), Postives = 161/191 (84.29%), Query Frame = 0
Query:   26 MATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDV-GKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQ 215
            M++ KIVKP GQ  D+++ +VA EL  LEN++ + KADLKDLYITAAK+VDV G  +AIV+FVP+RLLK+++KIQ RLVRELEKKFSG HVV+IAQRTILGK + RS  T  PR RSRTLT+VQDAIL+DLVYPTEIVGKRTRCK+DGTK LKVFLD KDQ+NV+ KLDTF  VYKKLTNKEV F F V+Q
Sbjct:    1 MSSAKIVKPAGQVADDFEKQVAHELAALENSSADIKADLKDLYITAAKQVDVVGGRKAIVIFVPFRLLKSFNKIQARLVRELEKKFSGRHVVIIAQRTILGKGHSRSAHTSAPRARSRTLTSVQDAILDDLVYPTEIVGKRTRCKLDGTKLLKVFLDPKDQVNVETKLDTFATVYKKLTNKEVVFEFPVQQ 191          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|676380333|ref|XP_009033445.1| (hypothetical protein AURANDRAFT_70049 [Aureococcus anophagefferens] >gi|323456545|gb|EGB12412.1| hypothetical protein AURANDRAFT_70049 [Aureococcus anophagefferens])

HSP 1 Score: 280.026 bits (715), Expect = 2.911e-91
Identity = 137/195 (70.26%), Postives = 165/195 (84.62%), Query Frame = 0
Query:   20 SSNCIVMATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQ-AIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFV 213
            SS  + MA+KK VKP GQEPDE +++VA+EL NLE ++ E KA+LK+LY  +AKEV+VG  + AI+VFVP+ LLK+YHKIQ RLVRELEKKFSG HV+++AQRTILGK+Y RS+ +KGPRPRSRTLT+VQD IL+DLVYPTEIVGKRTRCK+DG+K LKV LD KDQ+NV+ KLDTF  VYKKLTNKEV F F V
Sbjct:  135 SSAQVKMASKKCVKPEGQEPDEIESQVAAELYNLEQSSTELKAELKELYFLSAKEVEVGGGKKAIIVFVPFGLLKSYHKIQTRLVRELEKKFSGRHVIIVAQRTILGKNYARSSSSKGPRPRSRTLTSVQDCILDDLVYPTEIVGKRTRCKLDGSKVLKVLLDPKDQVNVETKLDTFSFVYKKLTNKEVIFEFPV 329          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|1173929235|gb|OQR82502.1| (40S ribosomal protein S7 [Achlya hypogyna])

HSP 1 Score: 268.085 bits (684), Expect = 2.180e-88
Identity = 137/202 (67.82%), Postives = 161/202 (79.70%), Query Frame = 0
Query:   26 MATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDV-GKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILE-----------DLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQ 215
            M++ KIVKP GQ  D+++ +VA EL  LEN++ E KADLKDLYITAAK+VDV G  +AIV+FVP+RLLK+++KIQ RLVRELEKKFSG HVV+IAQRTILGK + RS  T  PR RSRTLTAVQDAIL+           DLVYPTEIVGKRTRCK+DG+K LKV+LD KDQ+NV+ KLDTF  VYKKLTNKEV F F V+Q
Sbjct:    1 MSSAKIVKPAGQVADDFEKQVAQELAALENSSAEIKADLKDLYITAAKQVDVVGGRKAIVIFVPFRLLKSFNKIQARLVRELEKKFSGRHVVIIAQRTILGKGHSRSAHTSAPRARSRTLTAVQDAILDVRIFLARGISMDLVYPTEIVGKRTRCKLDGSKLLKVYLDPKDQVNVETKLDTFATVYKKLTNKEVVFEFPVQQ 202          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|635362833|emb|CCI10376.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 267.314 bits (682), Expect = 3.269e-88
Identity = 135/189 (71.43%), Postives = 156/189 (82.54%), Query Frame = 0
Query:   28 TKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGK-TQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQ 215
            T KIVKP GQ PDE++ +VA EL NLE +  E K +L+DLYITAAK+VDV    +AIV+FVPYRL+KA+ KIQ RL RELEKKFSG HVV IAQRTILGKSY RS K KGPRPRSRTL AVQ++ILEDLV+PTEIVGKRTRC +DGTK+LKV LD KDQ+NV+ KLDTF  VYKKLTNK+V F F ++Q
Sbjct:    4 TSKIVKPEGQFPDEFEQQVAQELQNLEGSAGELKNELQDLYITAAKQVDVASGRKAIVLFVPYRLMKAFRKIQIRLTRELEKKFSGRHVVFIAQRTILGKSYARSKKVKGPRPRSRTLKAVQESILEDLVFPTEIVGKRTRCLLDGTKSLKVHLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPMQQ 192          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|298713550|emb|CBJ27078.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 283.108 bits (723), Expect = 4.366e-88
Identity = 143/214 (66.82%), Postives = 169/214 (78.97%), Query Frame = 0
Query:    7 CLHLSFNAHNLPLSSN----CIVMATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGKTQ-AIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQ 215
            C   SF AH L LS       +     KIVKP GQE DE++ +VA EL NLE +  + KAD++DLYIT AK+VDVG  + AI++FVPYRLL++YHKIQ RLVRELEKKFSG HVV+IA RTILGKSY RSTKT+G RPRSRTLTAVQDA+LEDLV+PTEIVGKRTRCK+DG+K LKV LD KDQ+NV+ KLDTF  VYKK+TNK+V F F V++
Sbjct:  498 CWWPSFGAHTLELSGAGALVTMFTGATKIVKPEGQEADEFEQQVAQELFNLEMSAADIKADIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 711          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|325189119|emb|CCA23645.1| (40S ribosomal protein S7 putative [Albugo laibachii Nc14])

HSP 1 Score: 263.848 bits (673), Expect = 7.644e-87
Identity = 134/189 (70.90%), Postives = 153/189 (80.95%), Query Frame = 0
Query:   28 TKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDVGK-TQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQ 215
            T KIVKP GQ PDE++ +VA EL NLE +  E K +LKDLYITAAK+VDV    +AIV+FVPYRL+KA+ KIQ RL RELEKKFSG HVV IAQRTILG SY RS K KGPRPRSRTL  VQ++ILEDLV+PT+IVGKRTRC +DGTK LKV LD KDQ+NV+ KLDTF  VYKKLTNK+V F F V+Q
Sbjct:    4 TSKIVKPEGQIPDEFEQQVAQELQNLEGSAGELKNELKDLYITAAKQVDVASGRKAIVMFVPYRLMKAFRKIQIRLTRELEKKFSGRHVVFIAQRTILGMSYARSRKVKGPRPRSRTLKTVQESILEDLVFPTDIVGKRTRCLLDGTKALKVHLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVQQ 192          
BLAST of EWM23287.1 vs. NCBI_GenBank
Match: gi|673036684|ref|XP_008872303.1| (hypothetical protein H310_08370 [Aphanomyces invadans] >gi|574471869|gb|ETV98875.1| hypothetical protein H310_08370 [Aphanomyces invadans])

HSP 1 Score: 261.536 bits (667), Expect = 5.794e-86
Identity = 132/193 (68.39%), Postives = 157/193 (81.35%), Query Frame = 0
Query:   24 IVMATKKIVKPRGQEPDEWDTKVASELMNLENNNPEWKADLKDLYITAAKEVDV-GKTQAIVVFVPYRLLKAYHKIQQRLVRELEKKFSGSHVVVIAQRTILGKSYGRSTKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCKVDGTKTLKVFLDNKDQMNVDYKLDTFKEVYKKLTNKEVEFTFFVKQ 215
            +V  T KIVKP GQ  D+++ +VA EL+ LEN+  E KADLKDLYITAAK+VDV G  +AIV+FVP+RLLK ++KIQ RLVRELEKKFSG HVV+IAQRTILGK + R      PR RSRTLTAVQDAIL+DLVYPTEIVGKRTR ++DG+K LKV+LD KDQ+NV+ KLDTF  VYKKLT+K+V F F V+Q
Sbjct:    1 MVATTSKIVKPAGQVADDFEKQVAQELVTLENSAAEIKADLKDLYITAAKQVDVPGGRKAIVIFVPFRLLKNFNKIQARLVRELEKKFSGRHVVIIAQRTILGKGHSRGHNVSAPRARSRTLTAVQDAILDDLVYPTEIVGKRTRVRLDGSKLLKVYLDPKDQVNVETKLDTFATVYKKLTSKDVVFEFPVQQ 193          
The following BLAST results are available for this feature:
BLAST of EWM23287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM23287.1XP_005854904.1XP_005853994.1XP_008618076.1XP_009033445.1OQR82502.1CCI10376.1CBJ27078.1CCA23645.1XP_008872303.1
Match NameE-valueIdentityDescription
gi|585104292|gb|EWM23287.1|8.963e-161100.0040s ribosomal protein s7 [Nannochloropsis gaditana... [more]
gi|553188974|ref|XP_005854904.1|5.415e-139100.00small subunit ribosomal protein S7e [Nannochlorops... [more]
gi|553183926|ref|XP_005853994.1|1.215e-11599.39small subunit ribosomal protein S7e [Nannochlorops... [more]
gi|669165028|ref|XP_008618076.1|1.469e-9171.7340S ribosomal protein S7 [Saprolegnia diclina VS20... [more]
gi|676380333|ref|XP_009033445.1|2.911e-9170.26hypothetical protein AURANDRAFT_70049 [Aureococcus... [more]
gi|1173929235|gb|OQR82502.1|2.180e-8867.8240S ribosomal protein S7 [Achlya hypogyna][more]
gi|635362833|emb|CCI10376.1|3.269e-8871.43unnamed protein product [Albugo candida][more]
gi|298713550|emb|CBJ27078.1|4.366e-8866.82conserved unknown protein [Ectocarpus siliculosus][more]
gi|325189119|emb|CCA23645.1|7.644e-8770.9040S ribosomal protein S7 putative [Albugo laibachi... [more]
gi|673036684|ref|XP_008872303.1|5.794e-8668.39hypothetical protein H310_08370 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7394rna7394Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications