rna7390, rna7390 (mRNA) Nannochloropsis gaditana

Overview
Namerna7390
Unique Namerna7390
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1965
Alignment locationCM002471.1:471016..473069 -

Link to JBrowse

Properties
Property NameValue
Productamp-dependent synthetase and ligase
Orig transcript idgnl|cribi|Naga_101051g1.10358.mrna
Orig protein idgnl|cribi|Naga_101051g1.10358
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:471016..473069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101051g1gene7149Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23300.1cds7373Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7390rna7390-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7390 ID=rna7390|Name=rna7390|organism=Nannochloropsis gaditana|type=mRNA|length=1965bp
TCACATGCCTGGGTTTGGAAGGCGGCACCAGCCTTGTTTGGCTGGCAAGA
TGGATGGAGGCGGCGGCAGCAAAGTCCAGACGTTCGACCCCTTGGCATTG
GTGGGCAGGAAGAATAAAGGCCGCGCCTCGTCTACCACCAGCAGCAGCGG
CACGACGTCTTTATTGGAGAGACAAGAGAGCTTAGAAGGAGAATTAGAAG
AGGGAGTGTCACTGGAGGGAACGGACGAGAAAGACAACACGATTTACAAG
GCCATGCTGGTGGTGGTAGCTTTGTTGTGGGGCTCTAACTTCGGCGCGCT
CAAATACTTGGACACCTGCGGTGTGGACGTATCTTTGCTCACAAGCATGC
GCTTTCTCTTGGCCTCGGTGGCGCTCTTACCCTTCTTATGGGGGAAAGGA
ATGCCGGTCTTGAAGGCGGGGCTGGAGGTGGGCCTGTGGGTCACCCTGGG
GTACATCACGCAGGCGATCGGCCTGGAAACTACGGAGGCCTCCAAGTCCG
CCTTTATCTGCTCTCTGACCGTGGTGGTGGTGCCGCTCATCCAAGGTCTG
CTGGGCAAGAAGATCGCGCCCACCACCTGGACCGCCTGCGGCCTGGCCGT
CCTCGGTGTCGGGCTCCTGACCTTGCAAGGCGCCACGGGCCCCGTGATTG
GAGACTTGTGGTCTCTAGGCCAGCCTCTGGGGTTCGGTATCGCCTTCATG
CGCATCGAGCACTACATGAAGCAGCTCCCTGGCAAGGCCATCCCCCTGGC
GGCTGCCCAGATGATCTCAGTCTTCGGAGTCTCGGCCGTATGGGCCGCCG
TGACGACCGGCATGTTCCAGAACACGGGAGACCTGAGCATCCTCTTCGAC
ACGCCCCACTTCCTCTCTCTCCTCTACACGGGCCTGATTTCGAGCGCCCT
GGCTGTGGTGATCGAGTCGGCGGCCCTGGAATACGTCTCCTCGGAGGAGA
CCTCGATCATTTTCTCCACGGAACCCCTCTTTGCCGCAGCCACGTCCGCC
GTGGTGTTGGGAGAGCGCTTGAAGCCTTCGGGGATACTGGGTGGGTTCGT
GATCCTTTCCGCCTGCCTGCTTACCCAGGTGGACCTGACCTCTCTGGCCA
CCGTGCTGCCTATCCTCTCCCGAGTGGCGGACGAGGGCAGCCAGCGTACG
CAGGACTGAAGCGAGGGAGCGGGGATGTGCGACGCGGGGAGTGACTGGAA
CCCAGAGAGCACCGGAAGATCATGATAGGGACGGAAGCCCTGGGGCTGGA
GATAGGGGTTGGACGGAAGGAAAGTGCGAAATTGTCGGTGACGTTAGCGG
GAGCTTGGAGATTGAGGTTGAGCTGTAGGGGTACGCGCGAAGGCTGTCGA
GCATTGTAGACGATAGATTTGGTTGTGTGGAGGCGGAAAATAGGGAAGAG
AGTCCCGGCTAGCCAGCGGAAGATGGTAGCTTAAAGCCAGAGATGAGTGT
GAGGGAGGGATTGAAAATGAAAGATGCCGCCTTTGTGGGAGGGCATATGG
AAGCCGGGGACATTGTCATTACTACACACGGCCGTAGGACTGCCGTCGTA
GCAACCAGCGCCAGGATGTAATTCGGAAAAACGCAAGGAAGTAAGAGACG
GAAATTCATGGAGGGGCACGGAAGTCGCGACCTCCGGGTGCGAAGAAAAG
AAGACAAATATTATGTCAGAAGGAAAGTTGCGAAAATTGGAGATTTTTTC
GCCTCGCATGGACGGGGGGAGATCTAGGCGTCGAGTCCAATGCTTTGCCA
GAAAAGACCAGTGTCAAGCAGCTGACAGATCACGTTCGTGGCCTGCCTCT
TCCTTTTCAGTCTCCTTAACACGGATCTGATCTCGATGCCCATGATCTGT
CGCGTTGCTAACTTTTCCGCGAGACTGAGTACAAGACAAGATTACCAAGG
GAACGATTTGATCGAAGCCGATATACTCATGTCCTCACACACAAGCTCTA
TACTGCGCTGGGGCT
back to top

protein sequence of rna7390

>rna7390-protein ID=rna7390-protein|Name=rna7390|organism=Nannochloropsis gaditana|type=polypeptide|length=532bp
TFLPLSLPPSLLPLAELANLPPPTQVLTFDEALSASLARPLTFRPVPKDV
RSVATLVYTSGTTNKPKGVVLRHSNLLHQVNYNSFTDSPSKEPAYNPVLG
DVLVSVLPCWHIFERTAEYWMFSKGIHVVYSNVKNFKADLAKHQPQFIVA
VPRLLETIYRGVLQKFAAEKGAKKKIIEFFTRVGSAWVKAWRVARGLVLR
SRAPNPIERLLALVLALVLSPLAAVGDKLVWSKVRAGLGGRIKVLVAGGS
SMPLVLEDFFELLRTPVIVGYGMTETSPVITNRVAEKNLAGSVGRTARDT
EVKIVDPESGARLPEGQPGLVLMRGPQMMAGYKSNAEASKAVLDQEGFLD
TGDLGRIHPLTKHLIITGRAKDTIVLSNGENVEPQPIEDVVCANSALVDQ
VMCVGQDEKVLGMLVVPNVRALARAGLVDRGLAERVAELLGGQVLTNGIA
GSRAELEEVEASLREKKEVKKALLADIARAMGKSFRETERVGAVEVVLEP
FNMANGFLTQTLKVKRNVVSGHYAQEIEQMYR
back to top

mRNA from alignment at CM002471.1:471016..473069-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7390 ID=rna7390|Name=rna7390|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp|location=Sequence derived from alignment at CM002471.1:471016..473069- (Nannochloropsis gaditana)
ACCTTCCTCCCCCTCTCCCTTCCCCCCTCCCTCCTCCCTCTTGCAGAGCT
GGCCAACCTGCCCCCTCCCACACAGGTGCTCACCTTCGACGAGGCCCTCT
CCGCCTCCCTGGCCCGGCCCCTGACCTTCCGGCCCGTCCCTAAGGACGTG
CGCTCTGTGGCCACCCTAGTCTACACGTCGGGGACCACCAACAAGCCCAA
GGGCGTCGTCCTCCGGCACTCGAACCTGCTGCACCAGGTCAATTACAACT
CCTTCACGGATTCCCCTTCCAAAGAGCCCGCCTACAACCCCGTCCTGGGT
GATGTCCTCGTCTCGGTCCTTCCCTGCTGGCACATCTTCGAGCGCACCGC
CGAGTACTGGATGTTCAGCAAGGGGATCCACGTCGTCTACTCAAACGTCA
AGAACTTCAAGGCCGACCTGGCCAAGCACCAACCCCAATTCATCGTCGCA
GTTCCCCGGCTCTTGGAAACGATTTACCGGGGCGTCTTGCAAAAGTTTGC
TGCGGAAAAAGGCGCGAAAAAGAAGATCATCGAATTTTTCACCCGCGTGG
GGTCGGCCTGGGTCAAGGCCTGGCGCGTGGCCCGCGGTTTGGTCCTGCGC
TCGAGGGCGCCCAACCCGATCGAACGCCTCCTCGCGCTCGTCCTCGCCCT
CGTCCTTAGCCCCCTGGCCGCCGTGGGGGACAAGCTCGTCTGGAGTAAAG
TGCGGGCAGGTCTGGGTGGGAGGATCAAGGTCTTGGTGGCCGGCGGGAGC
TCCATGCCTCTGGTCCTGGAGGACTTCTTCGAGCTCCTGCGGACGCCCGT
GATCGTGGGCTACGGGATGACGGAGACATCGCCGGTGATCACGAATCGCG
TGGCGGAAAAGAATTTGGCGGGCTCGGTGGGGCGGACGGCGCGAGACACG
GAGGTGAAGATTGTGGACCCGGAGTCGGGGGCCCGGTTGCCTGAGGGGCA
GCCGGGCTTGGTCTTGATGCGGGGTCCGCAGATGATGGCTGGCTACAAGA
GCAATGCGGAGGCGAGCAAGGCTGTCTTGGACCAGGAGGGCTTCCTGGAC
ACGGGGGACCTGGGCAGGATCCACCCTCTGACGAAGCACTTGATCATCAC
GGGCCGGGCCAAGGACACGATCGTCCTCAGCAACGGCGAGAACGTGGAGC
CGCAGCCCATCGAGGACGTGGTTTGCGCGAACTCAGCATTGGTAGACCAG
GTCATGTGCGTCGGGCAGGATGAGAAAGTGCTAGGGATGCTGGTGGTGCC
CAACGTGAGGGCCTTGGCGCGGGCGGGACTGGTGGACAGGGGCCTGGCCG
AGCGGGTGGCCGAGTTATTGGGAGGGCAGGTCCTGACGAACGGGATCGCG
GGGAGTCGAGCTGAGCTGGAGGAGGTGGAAGCCAGCCTGAGGGAGAAGAA
GGAGGTGAAGAAGGCGTTGCTGGCGGATATTGCGCGGGCGATGGGAAAGT
CGTTCAGGGAGACGGAGCGGGTAGGGGCGGTGGAGGTGGTGCTGGAACCC
TTCAACATGGCGAATGGTTTCTTGACACAGACCTTGAAGGTGAAGAGGAA
CGTGGTGAGCGGACACTACGCCCAGGAGATCGAGCAGATGTACCGATGAG
TTTGGACGGAGCAGGGAAATTGGTGTCTCAGGAGAAAAAGGAGGAGGAAA
GGCGTGTGTGTGGACGCACGGAGGGATTTGAGGGTGGTGGTGACGAAAGA
AGGGGATCAGACACTTAAGGAGCTTCTTTTATTTAAGGGCGAGAGCACGT
TTTCGAATAAAAGCGTATGAAAGAAAAAAATCATGAGGTCCACTAGTAAG
CAAAAAAATGTTGAAGCAAGCAAAGCCCCAGCGCAGTATAGAGCTTGTGT
GTGAGGACATGAGTATATCGGCTTCGATCAAATCGTTCCCTTGGTAATCT
TGTCTTGTACTCAGTCTCGCGGAAAAGTTAGCAACGCGACAGATCATGGG
CATCGAGATCAGATCCGTGTTAAGGAGACTGAAAAGGAAGAGGCAGGCCA
CGAACGTGATCTGTCAGCTGCTTGACACTGGTCTTTTCTGGCAAAGCATT
GGAC
back to top

Coding sequence (CDS) from alignment at CM002471.1:471016..473069-

>rna7390 ID=rna7390|Name=rna7390|organism=Nannochloropsis gaditana|type=CDS|length=1599bp|location=Sequence derived from alignment at CM002471.1:471016..473069- (Nannochloropsis gaditana)
ACCTTCCTCCCCCTCTCCCTTCCCCCCTCCCTCCTCCCTCTTGCAGAGCT
GGCCAACCTGCCCCCTCCCACACAGGTGCTCACCTTCGACGAGGCCCTCT
CCGCCTCCCTGGCCCGGCCCCTGACCTTCCGGCCCGTCCCTAAGGACGTG
CGCTCTGTGGCCACCCTAGTCTACACGTCGGGGACCACCAACAAGCCCAA
GGGCGTCGTCCTCCGGCACTCGAACCTGCTGCACCAGGTCAATTACAACT
CCTTCACGGATTCCCCTTCCAAAGAGCCCGCCTACAACCCCGTCCTGGGT
GATGTCCTCGTCTCGGTCCTTCCCTGCTGGCACATCTTCGAGCGCACCGC
CGAGTACTGGATGTTCAGCAAGGGGATCCACGTCGTCTACTCAAACGTCA
AGAACTTCAAGGCCGACCTGGCCAAGCACCAACCCCAATTCATCGTCGCA
GTTCCCCGGCTCTTGGAAACGATTTACCGGGGCGTCTTGCAAAAGTTTGC
TGCGGAAAAAGGCGCGAAAAAGAAGATCATCGAATTTTTCACCCGCGTGG
GGTCGGCCTGGGTCAAGGCCTGGCGCGTGGCCCGCGGTTTGGTCCTGCGC
TCGAGGGCGCCCAACCCGATCGAACGCCTCCTCGCGCTCGTCCTCGCCCT
CGTCCTTAGCCCCCTGGCCGCCGTGGGGGACAAGCTCGTCTGGAGTAAAG
TGCGGGCAGGTCTGGGTGGGAGGATCAAGGTCTTGGTGGCCGGCGGGAGC
TCCATGCCTCTGGTCCTGGAGGACTTCTTCGAGCTCCTGCGGACGCCCGT
GATCGTGGGCTACGGGATGACGGAGACATCGCCGGTGATCACGAATCGCG
TGGCGGAAAAGAATTTGGCGGGCTCGGTGGGGCGGACGGCGCGAGACACG
GAGGTGAAGATTGTGGACCCGGAGTCGGGGGCCCGGTTGCCTGAGGGGCA
GCCGGGCTTGGTCTTGATGCGGGGTCCGCAGATGATGGCTGGCTACAAGA
GCAATGCGGAGGCGAGCAAGGCTGTCTTGGACCAGGAGGGCTTCCTGGAC
ACGGGGGACCTGGGCAGGATCCACCCTCTGACGAAGCACTTGATCATCAC
GGGCCGGGCCAAGGACACGATCGTCCTCAGCAACGGCGAGAACGTGGAGC
CGCAGCCCATCGAGGACGTGGTTTGCGCGAACTCAGCATTGGTAGACCAG
GTCATGTGCGTCGGGCAGGATGAGAAAGTGCTAGGGATGCTGGTGGTGCC
CAACGTGAGGGCCTTGGCGCGGGCGGGACTGGTGGACAGGGGCCTGGCCG
AGCGGGTGGCCGAGTTATTGGGAGGGCAGGTCCTGACGAACGGGATCGCG
GGGAGTCGAGCTGAGCTGGAGGAGGTGGAAGCCAGCCTGAGGGAGAAGAA
GGAGGTGAAGAAGGCGTTGCTGGCGGATATTGCGCGGGCGATGGGAAAGT
CGTTCAGGGAGACGGAGCGGGTAGGGGCGGTGGAGGTGGTGCTGGAACCC
TTCAACATGGCGAATGGTTTCTTGACACAGACCTTGAAGGTGAAGAGGAA
CGTGGTGAGCGGACACTACGCCCAGGAGATCGAGCAGATGTACCGATGA
back to top
Synonyms
Publications