|
|
Properties
| Property Name | Value |
|---|
| Product | uv radiation resistance-associated protein |
| Orig transcript id | gnl|cribi|Naga_100053g38.5052.mrna |
| Orig protein id | gnl|cribi|Naga_100053g38.5052 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002471.1 | supercontig | CM002471.1:461805..463807 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7386 ID=rna7386|Name=rna7386|organism=Nannochloropsis gaditana|type=mRNA|length=1816bp
CGGCCTTACATCGAGCTTGTACATGCACAGGGGAGGATCACGCATTCAGG
GGTGGACTGCGGCTTTGTCCACCTCGGGCGCCTCGCCATGGAAGCAGAGG
AAATAGCAGTCACATCTACTTCGCGGAAGGAGGGGAGAATGCTTTTTCGA
TTGCTTCGACAGTTGCGCTCAATTTCAATCCGAAACCTAGGTATCAGCAC
TGATGATGTGAACAGCGCCCCTCCACCCTCTACCTACATCCAAGTTCTAG
CTCCTCCGCCCCCCTCGTCCTCCCCTCCTTCTTCCTCCCCTCCACTGACC
CCCCTCGTCGCCCCTCAAGCCGACTTCCGCGTTCACTACACGAGCCAAGT
GGCACCCAGCACGTATAATCCAACCTGGCTGGTGCTGGACTTGGAACCAT
TCGCAGAGCACACTGACGAGGAGGGGAAAAACAAGGAAGGGGGGTGTCGG
CCGCCCTCGGAGGCGCACGGAGAGGAGTTCTGCGTTCGCGTCTTTCGCGC
TCCGGGCCCCTACGATGAAGGCGTCAATGTCGACAGAGAGACCTTGTCCG
ATCATTTTCGGGAGCGTCAGAACGGAAAGTGGAGGGGATGGTGGCCGTGC
CAACCGGCAACGGGGGAAAGCCCTCTGGCCGAATTTGTCTTCCGCCTCCC
CGATGTGTGGTGCCTTCCCCCCAGCATGAAGCTCGCACACCTGCATTTAC
CGTGCCGACATCCCTCCTGCTTGCTCGCCACGGGGGAGGACGGCAAAGGC
CTTCTGGTGTCCGCCTCTGTCGGGGTGGGCCTGGGACTGGAAGGGGGAGG
CACAGACCCGGCGCCCTACCTGCTAGACGAGCCCTACTTGGCAGGGCTCG
AGGAGCTCCAGCATCGACCATCCTTCTCACCAGGCTTCCCCTCCGCGCGC
GCGTCCTCGGTGGCGGGTCATGGTCTCCCCGAGGGCCTGGCTTCGCGGGA
CTTGGCCCCAGAGGGTCGCGGTCCCAAAGACGCGCCCTCCCCTGTGCCTG
TCTGGCTGCGAACAGAAGCGAGGAGGCTGGAAGCTTTGTTGGAAGCCGAG
GAAGGGGCGCTGGCCGTGGAAGAGGAGGCGCTGGTGGAGGAAGAGGAGGA
TCTGCGGGGCCTCGTGGCTATGGTGGAGGCCGAGATGGGCTTCGGGGAGA
GGCTGGCGGGGGCGACGCGGAGGCTGCTGGGGGAGGAGAGGGCGCGGGAG
GAGTCGTTGCTCCGCAAGGAGTTTTTGGTGGCGAGAAGGCAGCAGAGGCT
GGTGGCAGGGCTCCGGCGCATTTATCCGATCGAGCAGGGGGCGGGGGAGC
AAGAATATCGGATCCGCGGACTGGAACTGCCGGCGGACGTGGTGCACGCG
CCCAAAGACGACGAGGTTGTTGCCTCCGCCCTCGGGTACGTGTGCCACGT
GCTGGTGATGCTCTCCAAATACCTAGAAGTGCCTTTACGATACGCGCTCG
AGCCCCGGGCATCCCGCTCTCTCATTCGCGATGCGACCGTCGGATATCCT
GTTTTCCCCCTCTACCGACGGGGTGTTGAACGAGAGCGTTTTGAATGGGC
AATATACCTGCTCAGGAAAGACATCCAGGGGCTGTTGCACGCGCGGGGTG
TGCCCACGGCCTTGCTGCCCGGAAGAAAAGGCGTGGGGGGTACAGGGGGT
CAGTGGGGTTTTCTGCCAGATCCGCCGCAGGGGGCGCACATACTGCAAAA
TTTGGAGGCTTTGTTCACCCACGAATTGTCACAGTCATTCGCTTTTTTGT
GAGGGTGTTTTGTAAGTAATGTTTATGAAAATCACAAGCTTGGAAAAAGG
CGAGAGGTAGCTTTCA back to topprotein sequence of rna7386 >rna7386-protein ID=rna7386-protein|Name=rna7386|organism=Nannochloropsis gaditana|type=polypeptide|length=558bp
MPPSHPSSSPVADLHLSTFQPYSKRLLRQLRSISIRNLGISTDDVNSAPP
PSTYIQVLAPPPPSSSPPSSSPPLTPLVAPQADFRVHYTSQVAPSTYNPT
WLVLDLEPFAEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGV
NVDRETLSDHFRERQNGKWRGWWPCQPATGESPLAEFVFRLPDVWCLPPS
MKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLEGGGTDPAPYLL
DEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGP
KDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMV
EAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIY
PIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYL
EVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDI
QGLLHARGVPTALLPGRKGVGGTGGQWGFLPDPPQGAHILQNLEALFTHE
LSQSFAFL back to topmRNA from alignment at CM002471.1:461805..463807+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7386 ID=rna7386|Name=rna7386|organism=Nannochloropsis gaditana|type=mRNA|length=2003bp|location=Sequence derived from alignment at CM002471.1:461805..463807+ (Nannochloropsis gaditana)
CAGGGGAGGATCACGCATTCAGGGGTGGACTGCGGCTTTGTCCACCTCGG
GCGCCTCGCCatggaagcagaggaaatAGCAGTCACATCTACttcgcgga
aggaggggagaatgCTTTTTGTAAGAAATCAGGAAATCACCGTGGCATAA
ATTAGGAAACTATCGTGGCAGAATCATGTCCGAAATTATTGCATGGCGAC
TAAAGTTGCATGGCCATTTCTTGGTGCTAGTGTAGCTTGAGTGGGTTTTT
GTTGCGAATCGTATGCCACCTTCTCATCCGTCAAGCTCTCCTGTTGCTGA
TTTGCATCTCTCCACTTTTCAACCCTACTCAAAGCGATTGCTTCGACAGT
TGCGCTCAATTTCAATCCGAAACCTAGGTATCAGCACTGATGATGTGAAC
agcgcccctccaccctctaCCTACATCCAAGTTCtagctcctccgccccc
ctcgtcctcccctccttcttcctcccctccactgaCCCCCCTCGTCGCCC
CTCAAGCCGACTTCCGCGTTCACTACACGAGCCAAGTGGCACCCAGCACG
TATAATCCAACCTGGCTGGTGCTGGACTTGGAACCATTCGCAGAGCACac
tgacgaggaggggaaaaacaaggaaggggggtgtCGGCCGCCCTCGGAGG
CGCACGGAGAGGAGTTCTGCGTTCGCGTCTTTCGCGCTCCGGGCCCCTAC
GATGAAGGCGTCAATGTCGACAGAGAGACCTTGTCCGATCATTTTCGGGA
GCGTCAGAACGGAAAgtggaggggatggtggcCGTGCCAACCGGCAACGG
GGGAAAGCCCTCTGGCCGAATTtgtcttccgcctccccgatGTGTGgtgc
cttccccccagcATGAAGCTCGCACACCTGCATTTACCGTGCCGACATCC
CTCCTGCTTGCTCGccacgggggaggacggcaaagGCCTTCTGGTGTCCG
CCTCTGTCGGGGTGGGCCTGGgactggaagggggaggcacAGACCCGGCG
CCCTACCTGCTAGACGAGCCCTACTTGGCAGGGCTCGAGGAGCTCCAGCA
TCGACCATCCTTCTCACCaggcttcccctccgcgcGCGCGTCCTCGGTGG
CGGGTCATGGTCTCCCCGAGGGCCTGGCTTCGCGGGACTTGGCCCCAGAG
GGTCGCGGTCCCAAAgacgcgccctcccctgtgCCTGTCTGGCTGCGAAC
AGAAgcgaggaggctggaagCTTTGTTGGaagccgaggaaggggcgctgg
ccgtggaagaggaggcgctggtggaggaagaggaggatctgcGGGGCCTC
GTGGctatggtggaggccgagaTGGGCTTCGGGGAGAGGCTGGCGGGGGC
GACGCGGAGgctgctgggggaggagagggcgcgggaggagtCGTTGCTCC
GCAAGGAGTTTTTGGTGGCGAGAAGGCAGCAGAGGCTGGTGGCAGGGCTC
CGGCGCATTTATCCGATCGagcagggggcgggggagcaagaATATCGGAT
CCGCGGACTGGAACTGCCGGCGGACGTGGTGCACGCGCCCAAAGACGACG
AGGTTGttgcctccgccctcgggTACGTGTGCCACGTGCTGGTGATGCTC
TCCAAATACCTAGAAGTGCCTTTACGATACGCGCTCGAGCCCCGGGCATC
CCGCTCTCTCATTCGCGATGCGACCGTCGGATATCCTgttttccccctct
accGACGGGGTGTTGAACGAGAGCGTTTTGAATGGGCAATATACCTGCTC
AGGAAAGACATCCAGGGGCTGTTGCACGCGCGGGGTGTGCCCACGGCCTT
GCTGCCCGGAAGAAAAGGCGTGGGGGGTACAGGGGGTCAGTGGGGTTTTC
TGCCAGATCCGCCGCAGGGGGCGCACATACTGCAAAATTTGGAGGCTTTG
TTCACCCACGAATTGTCACAGTCATTCGCTTTTTTGTGAGGGTGTTTTGT
AAGTAATGTTTATGAAAATCACAAGCTtggaaaaaggcgagagGTAGCTT
TCA back to topCoding sequence (CDS) from alignment at CM002471.1:461805..463807+ >rna7386 ID=rna7386|Name=rna7386|organism=Nannochloropsis gaditana|type=CDS|length=1677bp|location=Sequence derived from alignment at CM002471.1:461805..463807+ (Nannochloropsis gaditana)
ATGCCACCTTCTCATCCGTCAAGCTCTCCTGTTGCTGATTTGCATCTCTC
CACTTTTCAACCCTACTCAAAGCGATTGCTTCGACAGTTGCGCTCAATTT
CAATCCGAAACCTAGGTATCAGCACTGATGATGTGAACagcgcccctcca
ccctctaCCTACATCCAAGTTCtagctcctccgcccccctcgtcctcccc
tccttcttcctcccctccactgaCCCCCCTCGTCGCCCCTCAAGCCGACT
TCCGCGTTCACTACACGAGCCAAGTGGCACCCAGCACGTATAATCCAACC
TGGCTGGTGCTGGACTTGGAACCATTCGCAGAGCACactgacgaggaggg
gaaaaacaaggaaggggggtgtCGGCCGCCCTCGGAGGCGCACGGAGAGG
AGTTCTGCGTTCGCGTCTTTCGCGCTCCGGGCCCCTACGATGAAGGCGTC
AATGTCGACAGAGAGACCTTGTCCGATCATTTTCGGGAGCGTCAGAACGG
AAAgtggaggggatggtggcCGTGCCAACCGGCAACGGGGGAAAGCCCTC
TGGCCGAATTtgtcttccgcctccccgatGTGTGgtgccttccccccagc
ATGAAGCTCGCACACCTGCATTTACCGTGCCGACATCCCTCCTGCTTGCT
CGccacgggggaggacggcaaagGCCTTCTGGTGTCCGCCTCTGTCGGGG
TGGGCCTGGgactggaagggggaggcacAGACCCGGCGCCCTACCTGCTA
GACGAGCCCTACTTGGCAGGGCTCGAGGAGCTCCAGCATCGACCATCCTT
CTCACCaggcttcccctccgcgcGCGCGTCCTCGGTGGCGGGTCATGGTC
TCCCCGAGGGCCTGGCTTCGCGGGACTTGGCCCCAGAGGGTCGCGGTCCC
AAAgacgcgccctcccctgtgCCTGTCTGGCTGCGAACAGAAgcgaggag
gctggaagCTTTGTTGGaagccgaggaaggggcgctggccgtggaagagg
aggcgctggtggaggaagaggaggatctgcGGGGCCTCGTGGctatggtg
gaggccgagaTGGGCTTCGGGGAGAGGCTGGCGGGGGCGACGCGGAGgct
gctgggggaggagagggcgcgggaggagtCGTTGCTCCGCAAGGAGTTTT
TGGTGGCGAGAAGGCAGCAGAGGCTGGTGGCAGGGCTCCGGCGCATTTAT
CCGATCGagcagggggcgggggagcaagaATATCGGATCCGCGGACTGGA
ACTGCCGGCGGACGTGGTGCACGCGCCCAAAGACGACGAGGTTGttgcct
ccgccctcgggTACGTGTGCCACGTGCTGGTGATGCTCTCCAAATACCTA
GAAGTGCCTTTACGATACGCGCTCGAGCCCCGGGCATCCCGCTCTCTCAT
TCGCGATGCGACCGTCGGATATCCTgttttccccctctaccGACGGGGTG
TTGAACGAGAGCGTTTTGAATGGGCAATATACCTGCTCAGGAAAGACATC
CAGGGGCTGTTGCACGCGCGGGGTGTGCCCACGGCCTTGCTGCCCGGAAG
AAAAGGCGTGGGGGGTACAGGGGGTCAGTGGGGTTTTCTGCCAGATCCGC
CGCAGGGGGCGCACATACTGCAAAATTTGGAGGCTTTGTTCACCCACGAA
TTGTCACAGTCATTCGCTTTTTTGTGA back to top
|