EWM23312.1, cds7369 (CDS) Nannochloropsis gaditana

Overview
NameEWM23312.1
Unique Namecds7369
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:462067..463743 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23312.1
Productuv radiation resistance-associated protein
Orig transcript idgnl|cribi|Naga_100053g38.5052.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:462067..463743 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0010508positive regulation of autophagy
Vocabulary: INTERPRO
TermDefinition
IPR018791UV_resistance/autophagy_Atg14
Homology
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|585104319|gb|EWM23312.1| (uv radiation resistance-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 1115.52 bits (2884), Expect = 0.000e+0
Identity = 558/558 (100.00%), Postives = 558/558 (100.00%), Query Frame = 0
Query:    1 MPPSHPSSSPVADLHLSTFQPYSKRLLRQLRSISIRNLGISTDDVNSAPPPSTYIQVLAPPPPSSSPPSSSPPLTPLVAPQADFRVHYTSQVAPSTYNPTWLVLDLEPFAEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGVNVDRETLSDHFRERQNGKWRGWWPCQPATGESPLAEFVFRLPDVWCLPPSMKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLEGGGTDPAPYLLDEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGPKDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGVPTALLPGRKGVGGTGGQWGFLPDPPQGAHILQNLEALFTHELSQSFAFL 558
            MPPSHPSSSPVADLHLSTFQPYSKRLLRQLRSISIRNLGISTDDVNSAPPPSTYIQVLAPPPPSSSPPSSSPPLTPLVAPQADFRVHYTSQVAPSTYNPTWLVLDLEPFAEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGVNVDRETLSDHFRERQNGKWRGWWPCQPATGESPLAEFVFRLPDVWCLPPSMKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLEGGGTDPAPYLLDEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGPKDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGVPTALLPGRKGVGGTGGQWGFLPDPPQGAHILQNLEALFTHELSQSFAFL
Sbjct:    1 MPPSHPSSSPVADLHLSTFQPYSKRLLRQLRSISIRNLGISTDDVNSAPPPSTYIQVLAPPPPSSSPPSSSPPLTPLVAPQADFRVHYTSQVAPSTYNPTWLVLDLEPFAEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGVNVDRETLSDHFRERQNGKWRGWWPCQPATGESPLAEFVFRLPDVWCLPPSMKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLEGGGTDPAPYLLDEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGPKDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGVPTALLPGRKGVGGTGGQWGFLPDPPQGAHILQNLEALFTHELSQSFAFL 558          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|585104318|gb|EWM23311.1| (uv radiation resistance-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 1067.76 bits (2760), Expect = 0.000e+0
Identity = 534/534 (100.00%), Postives = 534/534 (100.00%), Query Frame = 0
Query:   25 RLLRQLRSISIRNLGISTDDVNSAPPPSTYIQVLAPPPPSSSPPSSSPPLTPLVAPQADFRVHYTSQVAPSTYNPTWLVLDLEPFAEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGVNVDRETLSDHFRERQNGKWRGWWPCQPATGESPLAEFVFRLPDVWCLPPSMKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLEGGGTDPAPYLLDEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGPKDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGVPTALLPGRKGVGGTGGQWGFLPDPPQGAHILQNLEALFTHELSQSFAFL 558
            RLLRQLRSISIRNLGISTDDVNSAPPPSTYIQVLAPPPPSSSPPSSSPPLTPLVAPQADFRVHYTSQVAPSTYNPTWLVLDLEPFAEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGVNVDRETLSDHFRERQNGKWRGWWPCQPATGESPLAEFVFRLPDVWCLPPSMKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLEGGGTDPAPYLLDEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGPKDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGVPTALLPGRKGVGGTGGQWGFLPDPPQGAHILQNLEALFTHELSQSFAFL
Sbjct:   21 RLLRQLRSISIRNLGISTDDVNSAPPPSTYIQVLAPPPPSSSPPSSSPPLTPLVAPQADFRVHYTSQVAPSTYNPTWLVLDLEPFAEHTDEEGKNKEGGCRPPSEAHGEEFCVRVFRAPGPYDEGVNVDRETLSDHFRERQNGKWRGWWPCQPATGESPLAEFVFRLPDVWCLPPSMKLAHLHLPCRHPSCLLATGEDGKGLLVSASVGVGLGLEGGGTDPAPYLLDEPYLAGLEELQHRPSFSPGFPSARASSVAGHGLPEGLASRDLAPEGRGPKDAPSPVPVWLRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRLLGEERAREESLLRKEFLVARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGVPTALLPGRKGVGGTGGQWGFLPDPPQGAHILQNLEALFTHELSQSFAFL 554          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|298706671|emb|CBJ29600.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.857 bits (294), Expect = 1.052e-27
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 0
Query:  399 IYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDATVGYPV-FPLYRRGVERERFEWAIYLLRKDIQGLLHARGVP 510
            IYPI+     +E+ IRGLELPAD+     DDE ++SALGY  H++ ML+KYL++ LRY +   ASRS +RD   G  V +PL+RRGVE+ERF+  +YLL +D++ +L ARGVP
Sbjct:    5 IYPIKYQGNLKEFTIRGLELPADLYSI--DDERISSALGYTAHLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQILTARGVP 115          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|1183330986|gb|ORX60724.1| (hypothetical protein DM01DRAFT_1332846 [Hesseltinella vesiculosa])

HSP 1 Score: 120.553 bits (301), Expect = 4.207e-25
Identity = 77/221 (34.84%), Postives = 126/221 (57.01%), Query Frame = 0
Query:  311 LRTEARRLEALLEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMG-FGERL------AGATRRLLGEERA---REESLLRK--------EFLVARRQQRLVAGLRRIYPIEQGAGE-QEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRD---ATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGV 509
            L T A R++ + E  +    ++E  L ++ +D +  + +   ++    +RL        ATR+   +E+      E LL K        +  +  RQ+ L+A L  IYPIEQ   + Q++RIRGL LP + V+A  D+EVVA+ALG+  H++ ML+ YL +PLRY ++P  SR+ I D      G   FPLY +GV++ RFE+ ++LL K+I+ +++A G+
Sbjct:  289 LDTNAVRMQLMRERSQKETRLKE--LEKQAQDKKAHLDLAHDKVHQLRKRLQSRRCEINATRQRFSQEQKDLDNNERLLSKNTRMYHDTQVDLNLRQKELIADLFSIYPIEQSFDDFQQFRIRGLYLP-NSVYAGCDEEVVATALGFTAHLVSMLAYYLAIPLRYPIDPMGSRASIHDPVSMIHGSRTFPLYSKGVDKYRFEFGVFLLNKNIEQMMNAYGL 506          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|510999964|gb|EPB81539.1| (hypothetical protein HMPREF1544_11750 [Mucor circinelloides f. circinelloides 1006PhL] >gi|511000114|gb|EPB81676.1| hypothetical protein HMPREF1544_11593 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 120.168 bits (300), Expect = 5.625e-25
Identity = 59/129 (45.74%), Postives = 91/129 (70.54%), Query Frame = 0
Query:  385 VARRQQRLVAGLRRIYPIEQGAGE-QEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDAT---VGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGV 509
            + RR++ L+A L  IYPIEQ   + Q++RIRG+ LP + V+  ++DE++A+ALG+  H++ ML+ YLE+PLRY   P +SRS I+D      G   FPLY +GV+R RFE+ ++LL K+I+ L++A G+
Sbjct:  381 LNRRKKELIADLFSIYPIEQSYDDSQQFRIRGIYLP-NSVYDGQNDEMIATALGFTAHLVSMLAYYLEIPLRYPTTPMSSRSTIKDLVSLISGSRDFPLYAKGVDRYRFEFGVFLLNKNIEQLMNAYGL 508          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|758363817|emb|CEP13861.1| (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 117.857 bits (294), Expect = 3.209e-24
Identity = 58/129 (44.96%), Postives = 90/129 (69.77%), Query Frame = 0
Query:  385 VARRQQRLVAGLRRIYPIEQGAGE-QEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDAT---VGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGV 509
            + RR++ L+A L  IYPIEQ   + Q++RIRG+ LP + V+  ++D+++A+ALG+  H++ ML+ YLE+PLRY   P +SRS I D      G   FPLY +GV+R RFE+ ++LL K+I+ L++A G+
Sbjct:  376 LNRRRKELIADLFSIYPIEQSYDDSQQFRIRGIYLP-NSVYDGQNDDMIATALGFTAHLVSMLAYYLEIPLRYPTTPMSSRSTITDLVSLISGSREFPLYAKGVDRYRFEFGVFLLNKNIEQLMNAYGL 503          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|1026269015|gb|OAD02113.1| (hypothetical protein MUCCIDRAFT_164051 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 117.087 bits (292), Expect = 5.462e-24
Identity = 63/149 (42.28%), Postives = 98/149 (65.77%), Query Frame = 0
Query:  367 LLGEERAREESLLRKEFL---VARRQQRLVAGLRRIYPIEQGAGEQEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRDAT---VGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGV 509
            L   ER  E+++  ++ +   + RR++ L+A L  IYPIEQ      +RIRG+ LP + V+  ++DE++A+ALG+  H++ ML+ YLE+PLRY   P +SRS IRD      G   FPLY +GV+R RFE+ ++LL K+I+ L++A G+
Sbjct:  365 LQENERVLEKNIHMRQTMFHTLNRRKKELIADLFSIYPIEQ------FRIRGIYLP-NSVYDGQNDEMIATALGFTAHLVSMLAYYLEIPLRYPTTPMSSRSTIRDLVSLISGSRDFPLYAKGVDRYRFEFGVFLLNKNIEQLMNAYGL 506          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|671691055|emb|CDS05793.1| (hypothetical protein LRAMOSA08321 [Lichtheimia ramosa])

HSP 1 Score: 116.316 bits (290), Expect = 1.100e-23
Identity = 78/202 (38.61%), Postives = 119/202 (58.91%), Query Frame = 0
Query:  322 LEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRL-LGE------ERAREESLLRKEFL---VARRQQRLVAGLRRIYPIEQGAGE-QEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRD---ATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGV 509
            LE  EG + VE+ A  E   D R +  + E       +L  AT RL LG+      E   E S+   + L   + RR++ L+A L  IYPIEQ   +  ++ IRG+ LP + V+   +DE +A+ALG+  H++ ML+ YL +PLRY + P +SR+ I+D   +  G  +FPLY +GV+R RFE+ ++LL KDI+ L++A G+
Sbjct:  275 LEGIEGQI-VEKNA--EIRRDRRRIAELRETLERRRSKLDEATERLRLGQQDLQDSEEVLERSVQTHQRLFHKLNRRKKELIADLFSIYPIEQSLHDVHQFCIRGVYLP-NSVYTGCNDESIATALGFTAHLVSMLAFYLSIPLRYPITPMSSRATIKDPVSSINGPTIFPLYAKGVDRYRFEFGVFLLNKDIEQLMNAYGL 472          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|661180301|emb|CDH57106.1| (uv radiation resistance protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 113.62 bits (283), Expect = 8.664e-23
Identity = 74/202 (36.63%), Postives = 115/202 (56.93%), Query Frame = 0
Query:  322 LEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRL-LGE------ERAREESLLRKEFL---VARRQQRLVAGLRRIYPIEQGAGE-QEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRD---ATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGV 509
            LE  EG +  +     E   D R +  + E       +L  AT RL LG+      E   E S+   + L   + RR++ L+A L  IYPIEQ   +  ++ IRG+ LP + V+   +DE +A+ALG+  H++ ML+ YL +PLRY + P +SR+ I+D   +  G   FPLY +GV+R RFE+ ++LL K+I+ L++A G+
Sbjct:  374 LEGIEGQIVKKN---TEIRRDRRRIAELRETLERRKSKLNEATERLRLGQQDLQDSEEVLERSVQTHQRLFHKLNRRKKELIADLFSIYPIEQSLHDVHQFCIRGVYLP-NSVYTGCNDESIATALGFTAHLVSMLAFYLSIPLRYPITPMSSRATIKDPVSSINGPTTFPLYAKGVDRYRFEFGVFLLNKNIEQLMNAYGL 571          
BLAST of EWM23312.1 vs. NCBI_GenBank
Match: gi|661180300|emb|CDH57105.1| (uv radiation resistance protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 113.62 bits (283), Expect = 9.493e-23
Identity = 74/202 (36.63%), Postives = 115/202 (56.93%), Query Frame = 0
Query:  322 LEAEEGALAVEEEALVEEEEDLRGLVAMVEAEMGFGERLAGATRRL-LGE------ERAREESLLRKEFL---VARRQQRLVAGLRRIYPIEQGAGE-QEYRIRGLELPADVVHAPKDDEVVASALGYVCHVLVMLSKYLEVPLRYALEPRASRSLIRD---ATVGYPVFPLYRRGVERERFEWAIYLLRKDIQGLLHARGV 509
            LE  EG +  +     E   D R +  + E       +L  AT RL LG+      E   E S+   + L   + RR++ L+A L  IYPIEQ   +  ++ IRG+ LP + V+   +DE +A+ALG+  H++ ML+ YL +PLRY + P +SR+ I+D   +  G   FPLY +GV+R RFE+ ++LL K+I+ L++A G+
Sbjct:  375 LEGIEGQIVKKN---TEIRRDRRRIAELRETLERRKSKLNEATERLRLGQQDLQDSEEVLERSVQTHQRLFHKLNRRKKELIADLFSIYPIEQSLHDVHQFCIRGVYLP-NSVYTGCNDESIATALGFTAHLVSMLAFYLSIPLRYPITPMSSRATIKDPVSSINGPTTFPLYAKGVDRYRFEFGVFLLNKNIEQLMNAYGL 572          
The following BLAST results are available for this feature:
BLAST of EWM23312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104319|gb|EWM23312.1|0.000e+0100.00uv radiation resistance-associated protein [Nannoc... [more]
gi|585104318|gb|EWM23311.1|0.000e+0100.00uv radiation resistance-associated protein [Nannoc... [more]
gi|298706671|emb|CBJ29600.1|1.052e-2752.21conserved unknown protein [Ectocarpus siliculosus][more]
gi|1183330986|gb|ORX60724.1|4.207e-2534.84hypothetical protein DM01DRAFT_1332846 [Hesseltine... [more]
gi|510999964|gb|EPB81539.1|5.625e-2545.74hypothetical protein HMPREF1544_11750 [Mucor circi... [more]
gi|758363817|emb|CEP13861.1|3.209e-2444.96hypothetical protein [Parasitella parasitica][more]
gi|1026269015|gb|OAD02113.1|5.462e-2442.28hypothetical protein MUCCIDRAFT_164051 [Mucor circ... [more]
gi|671691055|emb|CDS05793.1|1.100e-2338.61hypothetical protein LRAMOSA08321 [Lichtheimia ram... [more]
gi|661180301|emb|CDH57106.1|8.664e-2336.63uv radiation resistance protein [Lichtheimia corym... [more]
gi|661180300|emb|CDH57105.1|9.493e-2336.63uv radiation resistance protein [Lichtheimia corym... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7386rna7386Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications