rna7374, rna7374 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7374
Unique Name	rna7374
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3450
Alignment location	CM002471.1:440352..442818 +

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, CCCH-type
Orig transcript id	gnl\|cribi\|Naga_100053g27.5073.mrna
Orig protein id	gnl\|cribi\|Naga_100053g27.5073
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:440352..442818 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100053g27	gene7134	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7374	rna7374-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23333.1	cds7357	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:440352..442818+
coding sequence from alignment at CM002471.1:440352..442818+

mRNA sequence

>rna7374 ID=rna7374|Name=rna7374|organism=Nannochloropsis gaditana|type=mRNA|length=3450bp
TCGGCACAAACGAATTGCTTGGTTGCACTAAAACCTCCTGCCGCATATTT
TGTTCCCCCTACAGTCTAAGCGATAGCATGTCGACTAAACCACCTTAATT
TTACATATCAGCGGGTTAAAAACATTGTATTACATAAATTTATGGATGTG
GTCAAGCGTACTCGGGACTTTGATCAAAACAAGGCCCGGATTCTTATTGA
TTTGCAGGGCGGAGAAGGAGGGGGGGGTAAGGACAGGTCTAAGAAGGGCA
GCCTCGATGCCCCAATCGTGGATTTGGTCGGCATGATCAACGCCCATAAA
GACTATGTAACTACTAGTTCATGCTCTGGTCGTATTGCTCTTTTTGAGGA
CGTGGACGGTGTAGTGTGTCACAAGAGCGGAGGAAAATGGCTGCTGTCAA
GCCACTCCCAGGTCACGACGCAAGCTGTGCGTGCTGCCTTGAAGAGCTGC
AAAGCAAGAGGCCAAGAGGGCGGTTCAGTAACTTTAAAGCAAGAGCCTTT
GGTTCTGCATATCGAATGTAGAGATATGTTTTCAGCAGAGCGCCTTCTGA
AGGTGGGTGTGGGAAGCGGCTTCAGAGAATCGGGTATTAGCCTTGGAAAG
AAGCGGGCACTGGTCGCAATAAGAACGGGAGCTAACTCGCTGGAGATGCC
TCTTGTGCTTGATGGGATAAATGTTACGACGGACGCCGGCCTCGAAGCAT
TGATTTTACTGGCCAATCGGAAGTTCAACCTGAACGTGAAGCGCACGGAA
CGCTTTGCCAACGCTTTTGCCGCGGCCTGTCGGAGCGACAACTCTCCGGC
CCACCCACTAAGCCTCAGCTCTTCTCGTCCCTTGCAGCTTGCTCAATCAA
CAAGCTTAGAAAGGGGAGAAGGCGCCGGCCAGGAGGCGGAGGACTCCCTC
CGAAGCTTGCGGTGGGTGAAAGCCGAGGCTACCCCGGAGAGTCAGGCGTT
GTGTCGGTGGGGGCATTCGCTCAGCCGGGCGGGGAAAGACGTTTACTGGA
TGTTCGGCGGATGGTGCAGCCAGCCTGCGGGGAGGCGTAACGATCTGATC
GAGCTCAAGGTCTCCGGGACCCGGCTGTGTGTCCGGCCGCTGGCCCCCCA
TGCCGCGTGCCCCGCCCCGCGGCAGCGAGAGAAGCATGCAGCCCTTGTTT
TGCCCGCCTCGCACTCCTCCGACACACCCGTACTGCTCATATTTGGGGGT
CGAGCCTCGCCGTTGCAGGCGCTGGGTGACCTGTGGGCTTTCGACGGGAA
GAAGGGGTGGAGAGAGCTCTCGCCGTCCGGCCCCCCCCCGAGGGCTCGCT
GGAGCCACAGCATTACGCTTCTTCGCGGTGGGCGGTTGCTCGTGTACGGT
GGCAGAGACAGAAATATGGTGTTTGGCGGAGTCCTACACTTCCTGTCCCG
CTCTGAGGACGGACTCTGGTCGTGGAGCGAGGAGAGACAGGAACCAAGCT
CTTTCGGCCCGGAGGCTCTGCCGCCGCTTTTCGCCCACACAACGTCGGAC
GTGAGCTGCAGTGACAAGGGAACGAAATTGCTTCTATGGGGTGGTCTGAG
AGACTTGAGTGGACGCGTATTCCAAAGGGGTGGTATTCTGGTGGATTTGG
CGGTCCGAGCATGCTCCCCCCTGCTGGCGGGAGAACCCGGACGCTACGCG
CACTCCGCCACGGCCCTGGGGACCTCTTTGGTAATCACTGGCGGCGTGCT
GGCGGACGAAGCTCGCTGCGGGGTGGCTTTAGTGCTTGAGATGGGCAAAG
ATCACCGTTTCGCCAAGGTAATTAGAATCGCATCGCCTTTTCCTCGGCTG
CAGGCGCCCCCTCTCGTTCACCACGCCACGGCCCCGGTCGTTCGCAGGGG
TACACAGTGCGACTCGCAAGGAGCTCTTCTTGTCATCGGAGGAGGCGTAC
AGACTTTCGCATTCAGTCCTGTCTTCGCACCCCCCTTGATGTTGCTCCCT
CCTTCCTGGCCAGCCTTCGCGGCAGGCCTGGTAAAGACGGGCGGGGCAGA
GCCCGCACCCGTCGCAGAGAACACGGCGAGTAAAGCGTCGAAGAGGACGC
CGTTGCCCCAACCCCCTCCATGTCTTTGCCTCCTCACCAACACTGCATCA
GCTAAGCTTCTGAAGACAGCCCTTGAGAGGGGGGGGCTCTTCGATAAGCG
ACGACGCATAGGACGCTCCACGTCAGTCCCCGGCCGCGTTGCCATTCCTA
TCTTGTCGAACGATACCAACGCCTCTCTCTTCGAAGAACTGAAAGCCTTG
TGCTCTCCCACACCCATCGCAGCACCTACGAGCGAGTGCATTTCTCAGCC
CGTCCGTCTTTTCCTCGAGGCCCTGCGTGGCCGTCGCCCCTCCGAGGTGG
TGCAGGGGTGGTGTGAAGAAGACGCTCCTTACGGGGCCCTGGCGCTCAAC
AGCCAAAGACTGTGCCTTCAGGCGGCTCTTCGTGACGCGCTCGAGGTCAG
TGGCCTCAGTCCAAGCCTTGTGACAGAGCGGCTGTTGACCAGCCTGCACG
TGGAGCGCCTGGGCGACGTTTTGCTCTTGGAGAGGGACCACCCCTTCCAA
GAGGCCAGCCTGTGGGCCCCGGCCTACCCTGCGCTCTGGCCAGCCCTGCT
ATCGGTGTTCCCTGGGGCAACACGCGTTGCTCGGATGGCCCCCATCCAAC
CTGGAACCAAGCGTCGCTCGCAAGTCGCACTCCTGTACCCGCCGCCGACG
CCGGAAGACGAGGACCTGCCGCCCGGCCCCGGCGGCCCCGGGTGGGTGAC
GGTGAGGGAGAACGGTCTAAGGTACAGTCTCGACATCACCAAGAACATGT
TCAGCTCTGGAAATGTCTCGGAGAAGGCCCGAATCGCTCGGATGGACTGC
AGCGGCCAAACCGTGGTGGACCTTTACGCCGGCATCGGCTACTACACTCT
GCCCCTGGCCGTGCACGGGCGGGCGTCGCGGGTGATCGCCTGCGAATGGA
ACCTGGATGCCTTGTATGCGCTGCGCCACAACCTGCGTTCCAACGGAGTG
GAGGGGGTGGTGGAGGTCTTGGAGGGCGACAACCGCCTCAGCACACGCAG
CCTCCCCGACAGGGTCGCCCACCGCGTCCACCTGGGGCTGATCCCCTCCA
GCGAGGAGGGCTGGCCAATTGCGGCACGCTTGCTGCGCGCAGAGGGTGGG
ATGCTGCACGTCCACGGCAACATGCTGGAGAGCGTGGCGGCGGCGTGGGT
GGCTCGCGTCGAGGATTTTTTCAGGGGCCGGGGCAGGGAGCTAGGGCGCC
CGTGGGCCGATCGGGTGGAGTGCGTGCACCTGGAGAGGGTCAAATCCTAC
GCCCCTTCTGTCTGGCACTTCGTCGCAGATGTGCAATGTGGAGGAAGCGT
GCTTACCAATGGACAGGGGGTGGGCGTTACCAGTTAGCTAAGAGATTTAC
GCTTGACCAGCAAGTAGGCAAAGAACATCTTGTTGCCGTACATTGAGAGA

protein sequence of rna7374

>rna7374-protein ID=rna7374-protein|Name=rna7374|organism=Nannochloropsis gaditana|type=polypeptide|length=667bp
MAPATPKYKLVRAEDSGAAGEKAVCAFFTLPQGCRNGANCSFVHAGTVAA
TVPAPRATLPNTTKNSHAMQQVRLQIGADKQGQSKKRTSSSPPSYSTAAH
AEPRKRSKKQEPETDESTSTEEAEEEGLPRAVKAAVHIGPTSVTAVSRKN
NIASTGKPTAEPCVGHDVTNPFLAVVPPPPATSHLRQPVAAAAKRGAPVH
SVQKKRGDFSALSVSVPVQPSQSASSPASPRVGNGVSMLSKLSALPVTPF
TIARKPNGATRDDDEPEDGELVQGEGEEGEDSAQSVVGANLSQHAKEESC
QAEAVKEEVCFHAGSPWTGCVKATMEHARFEANYRALAAQKKGEADWIEA
KKHGAWCRDLPHVLALDCEMCATRDPVSMEQDGKALIRLSVVCGHDEKQV
LLDTLVLPSLPVIDYRTDIHGIRPEDLRQVMFTFRHAQAAMLHLCCTETV
LIGHGLCNDLTALKMKHSRVVDTALLFEREDAPNHTPALKDVASALLGLD
MADMHDSVADAQVTLRIARHFLDRGPVAPVPRLPAAPNKKGRRAEAVQSC
LLLHRIPSFVTAAHIKDMFQTRTHVAPVTVDPVATSGAEGSLGRATARFL
SKGHADLAFATLTGPARPDKDGRLQKRVHLAGKKDYVQVRLMYAPGEAGH
EGRDGEEEPDLPSAKVF

mRNA from alignment at CM002471.1:440352..442818+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7374 ID=rna7374|Name=rna7374|organism=Nannochloropsis gaditana|type=mRNA|length=2467bp|location=Sequence derived from alignment at CM002471.1:440352..442818+ (Nannochloropsis gaditana)
TCTTTTCTCTTTATCCTGGACTTTCTCAATATGCCAATGCATCCCCACTC
ATCTCCCATTCACCTTTTCTACACAACGTAATTTGTCGATACCATTTTTC
TCCACCCGTTTTTCTCTCAAGTTATCAAAAGCAGAATTGCAGCCCAAGAA
GCCGCGACCTAGTGACCTAGTCAAGGGCTCCTAATCGCTCAGTGCTCTAT
GGCCCCAGCCACTCCCAAGTACAAGCTGGTGCGGGCGGAAGACAGCGGTG
CAGCGGGCGAAAAAGCAGTGTGCGCATTTTTTACCCTTCCTCAAGGCTGT
CGCAATGGAGCTAATTGTTCCTTTGTGCATGCGGGCACCGTCGCGGCCAC
AGTGCCCGCACCTCGTGCCACGCTCCCCAACACTACCAAGAATTCCCACG
CTATGCAGCAAGTCCGCCTCCAGATCGGAGCAGATAAACAGGGTCAGAGC
AAGAAGCGTACTTCATCCTCGCCGCCATCGTATTCCACCGCTGCCCATGC
GGAACCTCGGAAGCGGTCCAAGAAACAGGAGCCCGAGACGGACGAAAGCA
CTTCTACCGAGGaggctgaagaggagggcttACCACGGGCTGTGAAGGCC
GCTGTCCATATCGGACCAACTTCTGTCACAGCCGTGTCCAGAAAGAATAA
TATTGCCTCTACTGGCAAGCCAACAGCCGAGCCTTGCGTCGGTCACGACG
TCACgaaccccttcctcgccgtcgtccctcctcctcccgcgacTTCTCAC
CTTAGGCAGCCGGTGGCCGCAGCCGCTAAAAGAGGTGCTCCTGTGCACTC
TGTACAAAAGAAAAGAGGTGACTTCTCTGCGCTGTCTGTGAGCGTGCCGG
TGCAACCAAGCCAGTCCGCTTCCTCGCCGGCGTCCCCCAGGGTTGGGAAC
GGAGTAAGCATGCTTAGCAAGCTATCCGCGCTGCCGGTGACGCCTTTCAC
AATCGCCCGCAAGCCTAATGGAGCCACTCGCGACGACGATGAgccggagg
atggagagctggttcaaggggagggcgaggaaggcgaggacaGCGCGCAG
AGTGTAGTAGGGGCCAACCTCTCGCAgcacgcgaaggaggagagttgcca
ggcggaggccgtgaaagaggaggtttGCTTTCACGCTGGCAGCCCCTGGA
CTGGCTGCGTGAAAGCGACAATGGAGCACGCGCGCTTTGAGGCCAACTAT
CGAGCCCTGGCCGCccaaaaaaagggggaagcggaCTGGATCGAGGCGAA
GAAGCACGGCGCTTGGTGCAGAGACCTGCCCCACGTGCTGGCCCTGGACT
GCGAGATGTGTGCCACGCGAGACCCGGTGAGCATGgagcaggacgggaag
gCGTTGATCCGCCTGAGCGTGGTGTGCGGGCACGACGAGAAGCAGGTGCT
CCTGGACACGCTggtgctgccctccctccccgtcatcgACTATCGGACCG
ACATCCACGGGATCCGCCCAGAGGATCTCCGCCAGGTCATGTTCACCTTC
CGCCACGCTCAGGCCGCCATGCTGCACCTGTGCTGCACGGAAACCGTGCT
GATCGGGCACGGCCTTTGCAACGATCTGACGGCGCTCAAGATGAAGCATT
CCCGCGTCGTGgacaccgccctcctcttcgagcgGGAGGACGCTCCCAAC
CACACGCCCGCCCTCAAGGACGTGGCCAGCGCGCTCCTGGGTCTGGACAT
GGCCGACATGCACGACTCGGTCGCGGACGCCCAGGTCACCCTCCGCATCG
CCCGCCACTTCCTTGACCGAGGGCCCGTGGCGCCggtcccccgcctgccg
GCTGCTCCCAACAAGaaggggcggcgggcggaggcggtccagtcctgcct
cctgctgcacCGCATCCCCTCCTTTGTCACGGCCGCGCACATCAAGGACA
TGTTCCAGACCCGCACCCACGTGGCCCCTGTAACCGTCGATCCCGTGGCG
ACCTCGGGGGCCGAGGGCTCCCTGGGGCGAGCCACCGCCCGCTTTCTCTC
CAAGGGCCATGCCGACCTTGCCTTTGCGACTCTGACGGGGCCAGCCCGCC
CGGACAAGGACGGGCGCCTTCAGAAACGCGTGCACTtggcggggaaaaaa
gatTACGTCCAGGTCCGGCTCATGTATGCGCCGGGCGAGGCCGGGCACGa
ggggcgggatggagaagaggaaccGGACTTACCGTCGGCGAAAGTATTCT
AGATATGTCGATGAAAGTAGATGTAGATGTCCCGGTCGGGGAACATCAGT
AGGTGAGGAGCCACAACTACCCCCTCCATGTTGGCAGGGCAGAGCAAAGC
GGTTTTTGGATTTGAAAGCAAGGTGATGGGCTACCAGACGCACCCGATGG
GTACAATCTTTCTTGGCGTCTGTGAATTATTTGCTTTCAGATTTATGTAC
TCTATGTGGTCCTAAACACCTCGCATCTCTTAGCGGACGCGCCGTTCCCC
TCCCAGAGCGTTCCCCC

Coding sequence (CDS) from alignment at CM002471.1:440352..442818+

>rna7374 ID=rna7374|Name=rna7374|organism=Nannochloropsis gaditana|type=CDS|length=2004bp|location=Sequence derived from alignment at CM002471.1:440352..442818+ (Nannochloropsis gaditana)
ATGGCCCCAGCCACTCCCAAGTACAAGCTGGTGCGGGCGGAAGACAGCGG
TGCAGCGGGCGAAAAAGCAGTGTGCGCATTTTTTACCCTTCCTCAAGGCT
GTCGCAATGGAGCTAATTGTTCCTTTGTGCATGCGGGCACCGTCGCGGCC
ACAGTGCCCGCACCTCGTGCCACGCTCCCCAACACTACCAAGAATTCCCA
CGCTATGCAGCAAGTCCGCCTCCAGATCGGAGCAGATAAACAGGGTCAGA
GCAAGAAGCGTACTTCATCCTCGCCGCCATCGTATTCCACCGCTGCCCAT
GCGGAACCTCGGAAGCGGTCCAAGAAACAGGAGCCCGAGACGGACGAAAG
CACTTCTACCGAGGaggctgaagaggagggcttACCACGGGCTGTGAAGG
CCGCTGTCCATATCGGACCAACTTCTGTCACAGCCGTGTCCAGAAAGAAT
AATATTGCCTCTACTGGCAAGCCAACAGCCGAGCCTTGCGTCGGTCACGA
CGTCACgaaccccttcctcgccgtcgtccctcctcctcccgcgacTTCTC
ACCTTAGGCAGCCGGTGGCCGCAGCCGCTAAAAGAGGTGCTCCTGTGCAC
TCTGTACAAAAGAAAAGAGGTGACTTCTCTGCGCTGTCTGTGAGCGTGCC
GGTGCAACCAAGCCAGTCCGCTTCCTCGCCGGCGTCCCCCAGGGTTGGGA
ACGGAGTAAGCATGCTTAGCAAGCTATCCGCGCTGCCGGTGACGCCTTTC
ACAATCGCCCGCAAGCCTAATGGAGCCACTCGCGACGACGATGAgccgga
ggatggagagctggttcaaggggagggcgaggaaggcgaggacaGCGCGC
AGAGTGTAGTAGGGGCCAACCTCTCGCAgcacgcgaaggaggagagttgc
caggcggaggccgtgaaagaggaggtttGCTTTCACGCTGGCAGCCCCTG
GACTGGCTGCGTGAAAGCGACAATGGAGCACGCGCGCTTTGAGGCCAACT
ATCGAGCCCTGGCCGCccaaaaaaagggggaagcggaCTGGATCGAGGCG
AAGAAGCACGGCGCTTGGTGCAGAGACCTGCCCCACGTGCTGGCCCTGGA
CTGCGAGATGTGTGCCACGCGAGACCCGGTGAGCATGgagcaggacggga
aggCGTTGATCCGCCTGAGCGTGGTGTGCGGGCACGACGAGAAGCAGGTG
CTCCTGGACACGCTggtgctgccctccctccccgtcatcgACTATCGGAC
CGACATCCACGGGATCCGCCCAGAGGATCTCCGCCAGGTCATGTTCACCT
TCCGCCACGCTCAGGCCGCCATGCTGCACCTGTGCTGCACGGAAACCGTG
CTGATCGGGCACGGCCTTTGCAACGATCTGACGGCGCTCAAGATGAAGCA
TTCCCGCGTCGTGgacaccgccctcctcttcgagcgGGAGGACGCTCCCA
ACCACACGCCCGCCCTCAAGGACGTGGCCAGCGCGCTCCTGGGTCTGGAC
ATGGCCGACATGCACGACTCGGTCGCGGACGCCCAGGTCACCCTCCGCAT
CGCCCGCCACTTCCTTGACCGAGGGCCCGTGGCGCCggtcccccgcctgc
cgGCTGCTCCCAACAAGaaggggcggcgggcggaggcggtccagtcctgc
ctcctgctgcacCGCATCCCCTCCTTTGTCACGGCCGCGCACATCAAGGA
CATGTTCCAGACCCGCACCCACGTGGCCCCTGTAACCGTCGATCCCGTGG
CGACCTCGGGGGCCGAGGGCTCCCTGGGGCGAGCCACCGCCCGCTTTCTC
TCCAAGGGCCATGCCGACCTTGCCTTTGCGACTCTGACGGGGCCAGCCCG
CCCGGACAAGGACGGGCGCCTTCAGAAACGCGTGCACTtggcggggaaaa
aagatTACGTCCAGGTCCGGCTCATGTATGCGCCGGGCGAGGCCGGGCAC
GaggggcgggatggagaagaggaaccGGACTTACCGTCGGCGAAAGTATT
CTAG

Synonyms

Publications