rna7348, rna7348 (mRNA) Nannochloropsis gaditana

Overview
Namerna7348
Unique Namerna7348
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length786
Alignment locationCM002471.1:388998..390329 -

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Properties
Property NameValue
ProductZinc finger, SWIM-type
Orig transcript idgnl|cribi|Naga_100053g1.5057.mrna
Orig protein idgnl|cribi|Naga_100053g1.5057
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:388998..390329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100053g1gene7112Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23317.1cds7331Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7348rna7348-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7348 ID=rna7348|Name=rna7348|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
GTTCGCTACCATCTTATCGATAACGCAACTGTCTTCACCGACGCTCTGGC
TCATCACGTGCCCTTCGATCAGCATTTTGTCGCGTCCTGTGTACCGGAAC
AGAAGGATATGTCAATTCTGCGGAGCATGCATCGCCAAGCTAAAACTGTT
GACTGCGTACAAAATAGTGGGGCAGAAAACAAGCACAACTTTGTCACCAT
GGCTTTCGAGACAACTTGCTCAGTAGAAGACGTGGAGATGGCACTTAAGC
TGGGGTTGATTCGGGTAGGGGTGCAGCTGAGTGGATTTGCCAAAAAACCC
GTGCGTAAAGGCTTCATCACGTGTCAAGACATGTTGGAAGTGCTGCCGTT
TGACGAAGAAGACCATGATGATTCAATCGAGAGCTTTGACTTCGATGAGG
ATGAGTTTTGGGAGGAGGAGTGGGACGAGCCTCGTGCCGCACAAAAGAAA
CGCAACAGGATGTGAAAGAGGAATGTCCTGTAAGCATGATAGAAACAAGT
TGAGGGATATCATACTCATTACGCAGTGTGCAAAGGTGTCGAGGAAGAAA
ATGGCTCATGGTGATGATGTCTCCACTTTCATTTGTGAGAGGCAGAGAAT
AGAGTCTTCTACAATAGAAATAGGTCTACACGCGCAAATATGGGGGACGT
AATATTCTTTTTTATCGCGGTCACTTACTTTTGAATGTGAGGCGTTGAAA
ATTGCTGTGCGCGATTACGCAGATCTAAGAAAAATCTATAAACAAGAAAT
AACAATACACGGGTGGCACGTGATAGAGCATAATGC
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protein sequence of rna7348

>rna7348-protein ID=rna7348-protein|Name=rna7348|organism=Nannochloropsis gaditana|type=polypeptide|length=365bp
MLPLSSFISSSSMLIARRKRIPSSRSHLDDHSSKRFRCPRYLPAAPPLPS
PSVLSEVHSQKNSQTSDTIIELRNAFARQQELDEKRQGIEVRLADPSMCS
LVTRALRETVVRSLLRDREKARACMKNLMFGIDGEIVAALTQLSMVQSSQ
QELLQRCEDVLAFEPLVSKLETYARDRNFPQDCTSYCLDLGIDSWVRIKS
TQIIVSLGDSPLFQHFDGCSFNVTRTLRLAHLSPTMTGPTLFNLFQPVAV
SVISAEFQKSKIPEMQVVVEVGGDPEEHVDALVGQSKLCERNKGFRVICY
GYRTYMPKDSFCNCDEPCKTWACSLPPSCQRTACRHLVGMIIPISRTATM
DSQCRSLEIMFSIVT
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mRNA from alignment at CM002471.1:388998..390329-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7348 ID=rna7348|Name=rna7348|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp|location=Sequence derived from alignment at CM002471.1:388998..390329- (Nannochloropsis gaditana)
GTTTGAGGACCTATCGTTCTCCTCATCCATTTCCCTACAGAGGCTGTCAC
TTTCTGCGGATCCCTCTTTCGACATACAAGCCCCGAACCTCCCCATCCGC
GTGCTCACTCCTTCCCTTGTGCTGGAAAAATGCTGCCCCTTTCGTCCTTC
ATCTCTTCCTCTTCAATGCTAATAGCCAGGCGAAAAAGAATACCTTCTTC
GCGAAGTCACTTAGATGATCATTCATCCAAACGCTTTAGATGCCCACGCT
ACCTCCCTGCTGCGCCTCCTCTCCCGTCCCCCTCGGTACTTTCTGAGGTT
CATTCCCAAAAAAATTCACAGACATCCGACACAATTATCGAACTCCGAAA
TGCATTTGCACGCCAGCAAGAACTTGATGAAAAAAGGCAAGGCATAGAGG
TGCGTCTCGCCGATCCCTCCATGTGCTCTCTTGTCACACGAGCACTACGT
GAAACTGTGGTTCGCTCCCTCCTGAGGGACCGTGAAAAGGCCCGCGCATG
CATGAAAAACCTCATGTTTGGAATCGATGGTGAGATTGTAGCTGCGCTGA
CGCAGCTGAGTATGGTGCAAAGCTCGCAACAAGAGCTCCTTCAACGGTGT
GAAGACGTCTTGGCTTTTGAACCCTTGGTCTCTAAATTGGAGACCTATGC
CCGTGACCGTAACTTCCCTCAAGACTGTACGTCGTACTGTCTTGATCTAG
GTATTGACTCTTGGGTGCGCATTAAAAGCACTCAGATCATCGTTTCTCTG
GGGGACTCTCCTCTGTTTCAACATTTTGATGGTTGCTCTTTCAACGTCAC
TCGCACTCTTCGTCTGGCACACCTTTCTCCCACAATGACGGGCCCAACTT
TATTCAATTTATTTCAACCTGTAGCTGTTAGTGTAATCAGTGCTGAGTTC
CAGAAATCTAAAATACCGGAGATGCAGGTGGTGGTCGAAGTTGGAGGCGA
TCCGGAAGAGCATGTTGATGCGCTTGTGGGACAAAGCAAACTATGTGAGC
GAAATAAAGGGTTCAGGGTGATTTGCTACGGCTATCGCACATACATGCCG
AAAGACAGTTTCTGTAATTGTGATGAGCCTTGCAAGACCTGGGCATGTAG
CTTACCACCATCCTGCCAGCGAACTGCATGTCGACATTTGGTAGGCATGA
TAATTCCCATATCGCGAACTGCCACCATGGATTCCCAATGTAGATCCTTG
GAGATTATGTTCTCGATTGTGACTTGAATCATCACCAACGAGGTCACTGT
AAGCGTGACAATACTAGGAAAACCCCCAAAAAACTGATCGTGAATGATAA
CAAAAGCACCAAAGAATCTGTGCCACATTTTC
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Coding sequence (CDS) from alignment at CM002471.1:388998..390329-

>rna7348 ID=rna7348|Name=rna7348|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002471.1:388998..390329- (Nannochloropsis gaditana)
ATGCTGCCCCTTTCGTCCTTCATCTCTTCCTCTTCAATGCTAATAGCCAG
GCGAAAAAGAATACCTTCTTCGCGAAGTCACTTAGATGATCATTCATCCA
AACGCTTTAGATGCCCACGCTACCTCCCTGCTGCGCCTCCTCTCCCGTCC
CCCTCGGTACTTTCTGAGGTTCATTCCCAAAAAAATTCACAGACATCCGA
CACAATTATCGAACTCCGAAATGCATTTGCACGCCAGCAAGAACTTGATG
AAAAAAGGCAAGGCATAGAGGTGCGTCTCGCCGATCCCTCCATGTGCTCT
CTTGTCACACGAGCACTACGTGAAACTGTGGTTCGCTCCCTCCTGAGGGA
CCGTGAAAAGGCCCGCGCATGCATGAAAAACCTCATGTTTGGAATCGATG
GTGAGATTGTAGCTGCGCTGACGCAGCTGAGTATGGTGCAAAGCTCGCAA
CAAGAGCTCCTTCAACGGTGTGAAGACGTCTTGGCTTTTGAACCCTTGGT
CTCTAAATTGGAGACCTATGCCCGTGACCGTAACTTCCCTCAAGACTGTA
CGTCGTACTGTCTTGATCTAGGTATTGACTCTTGGGTGCGCATTAAAAGC
ACTCAGATCATCGTTTCTCTGGGGGACTCTCCTCTGTTTCAACATTTTGA
TGGTTGCTCTTTCAACGTCACTCGCACTCTTCGTCTGGCACACCTTTCTC
CCACAATGACGGGCCCAACTTTATTCAATTTATTTCAACCTGTAGCTGTT
AGTGTAATCAGTGCTGAGTTCCAGAAATCTAAAATACCGGAGATGCAGGT
GGTGGTCGAAGTTGGAGGCGATCCGGAAGAGCATGTTGATGCGCTTGTGG
GACAAAGCAAACTATGTGAGCGAAATAAAGGGTTCAGGGTGATTTGCTAC
GGCTATCGCACATACATGCCGAAAGACAGTTTCTGTAATTGTGATGAGCC
TTGCAAGACCTGGGCATGTAGCTTACCACCATCCTGCCAGCGAACTGCAT
GTCGACATTTGGTAGGCATGATAATTCCCATATCGCGAACTGCCACCATG
GATTCCCAATGTAGATCCTTGGAGATTATGTTCTCGATTGTGACTTGA
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Synonyms
Publications