EWM23317.1, cds7331 (CDS) Nannochloropsis gaditana

Overview
NameEWM23317.1
Unique Namecds7331
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:389103..390200 -

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Properties
Property NameValue
Protein idEWM23317.1
ProductZinc finger, SWIM-type
Orig transcript idgnl|cribi|Naga_100053g1.5057.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:389103..390200 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
Homology
[Close]
BLAST of EWM23317.1 vs. NCBI_GenBank
Match: gi|585104324|gb|EWM23317.1| (Zinc finger, SWIM-type [Nannochloropsis gaditana])

HSP 1 Score: 751.895 bits (1940), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0 
Query:    1 MLPLSSFISSSSMLIARRKRIPSSRSHLDDHSSKRFRCPRYLPAAPPLPSPSVLSEVHSQKNSQTSDTIIELRNAFARQQELDEKRQGIEVRLADPSMCSLVTRALRETVVRSLLRDREKARACMKNLMFGIDGEIVAALTQLSMVQSSQQELLQRCEDVLAFEPLVSKLETYARDRNFPQDCTSYCLDLGIDSWVRIKSTQIIVSLGDSPLFQHFDGCSFNVTRTLRLAHLSPTMTGPTLFNLFQPVAVSVISAEFQKSKIPEMQVVVEVGGDPEEHVDALVGQSKLCERNKGFRVICYGYRTYMPKDSFCNCDEPCKTWACSLPPSCQRTACRHLVGMIIPISRTATMDSQCRSLEIMFSIVT 365
            MLPLSSFISSSSMLIARRKRIPSSRSHLDDHSSKRFRCPRYLPAAPPLPSPSVLSEVHSQKNSQTSDTIIELRNAFARQQELDEKRQGIEVRLADPSMCSLVTRALRETVVRSLLRDREKARACMKNLMFGIDGEIVAALTQLSMVQSSQQELLQRCEDVLAFEPLVSKLETYARDRNFPQDCTSYCLDLGIDSWVRIKSTQIIVSLGDSPLFQHFDGCSFNVTRTLRLAHLSPTMTGPTLFNLFQPVAVSVISAEFQKSKIPEMQVVVEVGGDPEEHVDALVGQSKLCERNKGFRVICYGYRTYMPKDSFCNCDEPCKTWACSLPPSCQRTACRHLVGMIIPISRTATMDSQCRSLEIMFSIVT
Sbjct:    1 MLPLSSFISSSSMLIARRKRIPSSRSHLDDHSSKRFRCPRYLPAAPPLPSPSVLSEVHSQKNSQTSDTIIELRNAFARQQELDEKRQGIEVRLADPSMCSLVTRALRETVVRSLLRDREKARACMKNLMFGIDGEIVAALTQLSMVQSSQQELLQRCEDVLAFEPLVSKLETYARDRNFPQDCTSYCLDLGIDSWVRIKSTQIIVSLGDSPLFQHFDGCSFNVTRTLRLAHLSPTMTGPTLFNLFQPVAVSVISAEFQKSKIPEMQVVVEVGGDPEEHVDALVGQSKLCERNKGFRVICYGYRTYMPKDSFCNCDEPCKTWACSLPPSCQRTACRHLVGMIIPISRTATMDSQCRSLEIMFSIVT 365
The following BLAST results are available for this feature:
BLAST of EWM23317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104324|gb|EWM23317.1|0.000e+0100.00Zinc finger, SWIM-type [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7348rna7348Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications