rna7347, rna7347 (mRNA) Nannochloropsis gaditana

Overview
Namerna7347
Unique Namerna7347
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3510
Alignment locationCM002471.1:386669..387454 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g1.3902.mrna
Orig protein idgnl|cribi|Naga_100057g1.3902
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:386669..387454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100057g1gene7111Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23343.1cds7330Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7347rna7347-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7347 ID=rna7347|Name=rna7347|organism=Nannochloropsis gaditana|type=mRNA|length=3510bp
CGTCTCTTCCTGTTCCAAGGCCCCTCATCCTCTCGGCTCTTTTCTTGCAA
TCTAGGCATTCCATACACATGCACACCGACATATAGCTTCATGGATTCGC
ATTTCTTCTAAGGTGCTTGAAGTTATGTTAGCGGGGGAGGCCGTCGACGT
CCAGGTTGTGGCTAAGCAGCGTGGGAGGAGGCAAGCGTGCTACTCATGCA
GACCGGTCTCCGTAATGCCGTCCTTTGCCTTGGGGCTTATTTCGTTCCTT
TTTTTTCAGCTAGGAAATATCAACGCTTTTGTACTACCGTGTTGGGTCTC
GAGTTTCATGGATCGCGGCCATTTTCGTCCTCATGCCGTGGTTCAAGAAG
AAGATCGCCGAGCTATCAGCAGAGTCAAGCCAACTTCCTCCAATCTTGCA
TCAAGATTTCGCAACGCCTCGCCACCCAATGAAATACATGATTCAATATT
GGACGCTGATATGGATTTTTTTGCTGTGGTTTCTGCGAAATCTACGGGCC
GTTTTCCTGAAAATGGAACGACGCCGACGCCCTCGGTCCCCCTCAACCTG
GTCACTGAGACGGTCTCCTGGCTCTCTGACAAATGGTACGGCATAGTGTC
GAAAAAGACGCGAGAAGCCTCTCGTTTGCGGATAGTCGGTGAGGGGATGG
GCCTCGGACCAAAAAATGAGACAAGAAGCACGAGGACTGGTCCTCAGGCC
GGACGGGGAGGGAACGAGGGAACCGAGAGCATCTCAGGACCCGGGCACAA
GCAGACTGGTGGCCTAATGGGACAAAATAAAGCGAAGAAGAAAGGCAACG
AGGCGGCAAGTCTGCGTCGGGGGAGTGCGGGGGGAGGTGTGAAGAAAACA
ATGAAAGCCTTTGCGGATGGGTGGAGCGTGAGCGCAGGGGCGTGGGCGGC
GCGTGCGAAGGCCTCGGGCCTCGGGGCCTGGTCTGGCCTTCGTTCCAAGG
TGTCAACACTTCTTCCAAAATCTATGGAGCGGATCGGTGCGAGGATGAAA
AAGAAGCGGAAAGGGGCCGCCGGCCGGGGGAGACCGGGGTCAGCGCGGTC
GCCCCGGGAGCAGATGGCGGAGCAACGGAAGAAAAGACAAGCCGGCAAGC
CCGCTGACAGCGGCGCTAGGAGCGGAGTGAATCTGAAAAGCTTCTTGCTG
CCATCTCTGCTGCAGCGGATCGATCCATCCGCCTACAGTGCCGGTGTGTG
GCGGCAGACCGTGTTCCCAGGTCAAGGCGAACGGGGCCGGCCGGGGCGGG
AAGAGGGGCCGGATGCGGTGGACCTGGAGCCTCCCTCAGGCCGGCCGCCG
GTCTTCGACGACCTCGTGGAGTTCCCACGTGGCCCCGCGGAGGCCTGGGA
CCTGTTCGTGGGGGACGCGCGGCATTTGGCGGACTCGATCTATCGGCTCC
TGGCCCCAGCAGCTGCGCTGCCCAAGGCGGGCCCCAGCCGTCCCCAGGTA
GGCGCGCGGCCAAAGGCAGCTAGGGTCAAGCAAGGGCCCTTGTATGCGAC
CCCGCTCGTCCTGCGCCAGAAGAAAGCCAAGGCAGCGGTGGCGGCTAGCG
CCTCGACAGCATGGCCCCAGGTGTCGGGGCCGGGGGGGGAGGGAGACACG
GAGAGGGAGAAGATGGAGCTTGAGGCCCTTGATTGGGCGGATCATGGGGT
CGACATGGAGAAGGAGGAGCAGGGGGACGCCGAGAGCGAGGTCTGGCAAG
GCTTACGGGGACGAGTGCGGGAGATGATCGAGGAGAGCGCGGGCGCCCCC
TCTGGGGCAGAGTACTACGCGATGGAGGGGGCGGGAAGCGAGCCGCGGGA
GCAGGAGACGGGGGCAGGGCGTTCCACGCCTTCATCTAGGCCAGGAGAGG
AAAGGCAGGAGCGCCGTCCGAGCAGGGCCAGAAACCTTCCCGTGCCTCTG
CGGGCGCCGCGCCTGGTTGACCGCCTGGACGAGCGGCCCCGCGGGATCGC
CGCCGCAGGATCCTCTTTGCCAGTGACTCCGGCTGCAGCTTCTGAGACCT
TTAGCGACGAGAGGATCATGGACGCGCGCGTGGCTTTGCCGCCTTTCCCC
TCACGACCGCCCATGGAGGACGAGTACTGGCCCGTCCCCGCGTCCTCAGC
GTTTCATGCCTCTTCTGCCTTCGACGAGGAGGAAGAGATGGGCGAGGGTA
GGGCCGAAGAGGATGGAGAGGATTTGGACGACACTGCAGTTGCGCCCTGG
CGCCGGGGCCTACCTGAATGGCTGAAGCGCGTGAGCCTCACTCGTCTGCT
GGTCAGAAAACCAACCCCCGAGCGGATGCTGGAGGTAATCCGTCGGCGGC
AGCAGGTGCGACGGATGCCCCGCAAGATGGATGACGCCTTCCTCCGCACT
GTCTCCCGAAAGTTGCAAGGGAACCGACTCCGCATTCGGTCCTTTCAGCT
CCAGACCGACAGGTACCGCAACTCCCTGCTCTCGGCGGGCGCCTATGTGG
ACGCCGTGGTGTCCCTCTTTGGCTCTGCCAAGGAGGCTGAGGAGGTTCTC
TTGCCTTTGACGCGGTGGCTCCCCGAGGCCTCCAAGCGCCGAGGCCTCTC
GGATGAGTACTGGGCGCGGCGCCGGGCCCGGCTTGGCGGTTTGCAGACAG
TTGAGTCGCGCCAAGGGGGTGAAGGGAGTGCGGCCGGGGGCACCCGGGCG
CTCCTGAAGGAGGCTGGGCGGGTGGGGTTGACGGCATCGACGGCTTGGAT
GGCGAGGATGAAGGCAGCGGTATCAGAGCGGGTGGTCGGGTTGACGCGAG
GGCTGGAAGAGCTCGGACGGGCTCTGGGTAGTATTACCTGCGGCAAAAGC
ACACTCATTGAATTGTCTTTCGAGGGTGGAAAAGAAGAGGAGGAAGCTAA
GGATGGGAAAAGCATGAGTATTGACGATCCCACCGTGTTGGCCTTGACAG
AACTAGAGCGCGAGCTGAAAGGACGGGGGCAAGTCGGTGGGAATGGGGGC
GATGACGACCCCATGGCCCGCATTGAGGACATATTAGGGGACAGAAATGC
GGCCTATTTTCAGCAGCGGTTGGACCTATACATGCGGGGGGGGCTCTCGG
GTATGGATCTTTATCGCGCTTTAAAGCGCCTGTGCCTGGCAAATGAGATG
CGACTAGATCTGGTAATGCGGCAGCTGCGCGAAGAGTCTTTGCGGGGCGA
TGAAAGGTGGCGTAGCCAGAATGAGAGATTGGGGGCCTTGCTACGGATTC
ATGAGGGACAGAGGAAAATCATCTGGTAGTGGTCTTCGGAGCCTGTATCA
GTACTGTGCTGGGTGTTTAGACAAAGGGAGGTTTATCGAATTGGAGATTC
TCCATTGATGATGTACTTGCTTGCAGTGACCATGCATACACTCTCCGCTC
CTTGTACACATGTAGTATTATGACACGACATTTTATTTGTCCATAAGCAT
TAAAATGCTAAAAAAATGTAATGAATTTGACAAGACACGCATTATGCTCT
ATCACGTGCCACCCGTGTATTGTTATTTCTTGTTTATAGATTTTTCTTAG
ATCTGCGTAA
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protein sequence of rna7347

>rna7347-protein ID=rna7347-protein|Name=rna7347|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
VRYHLIDNATVFTDALAHHVPFDQHFVASCVPEQKDMSILRSMHRQAKTV
DCVQNSGAENKHNFVTMAFETTCSVEDVEMALKLGLIRVGVQLSGFAKKP
VRKGFITCQDMLEVLPFDEEDHDDSIESFDFDEDEFWEEEWDEPRAAQKK
RNRM
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mRNA from alignment at CM002471.1:386669..387454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7347 ID=rna7347|Name=rna7347|organism=Nannochloropsis gaditana|type=mRNA|length=786bp|location=Sequence derived from alignment at CM002471.1:386669..387454- (Nannochloropsis gaditana)
GTTCGCTACCATCTTATCGATAACGCAACTGTCTTCACCGACGCTCTGGC
TCATCACGTGCCCTTCGATCAGCATTTTGTCGCGTCCTGTGTACCGGAAC
AGAAGGATATGTCAATTCTGCGGAGCATGCATCGCCAAGCTAAAACTGTT
GACTGCGTACAAAATAGTGGGGCAGAAAACAAGCACAACTTTGTCACCAT
GGCTTTCGAGACAACTTGCTCAGTAGAAGACGTGGAGATGGCACTTAAGC
TGGGGTTGATTCGGGTAGGGGTGCAGCTGAGTGGATTTGCCAAAAAACCC
GTGCGTAAAGGCTTCATCACGTGTCAAGACATGTTGGAAGTGCTGCCGTT
TGACGAAGAAGACCATGATGATTCAATCGAGAGCTTTGACTTCGATGAGG
ATGAGTTTTGGGAGGAGGAGTGGGACGAGCCTCGTGCCGCACAAAAGAAA
CGCAACAGGATGTGAAAGAGGAATGTCCTGTAAGCATGATAGAAACAAGT
TGAGGGATATCATACTCATTACGCAGTGTGCAAAGGTGTCGAGGAAGAAA
ATGGCTCATGGTGATGATGTCTCCACTTTCATTTGTGAGAGGCAGAGAAT
AGAGTCTTCTACAATAGAAATAGGTCTACACGCGCAAATATGGGGGACGT
AATATTCTTTTTTATCGCGGTCACTTACTTTTGAATGTGAGGCGTTGAAA
ATTGCTGTGCGCGATTACGCAGATCTAAGAAAAATCTATAAACAAGAAAT
AACAATACACGGGTGGCACGTGATAGAGCATAATGC
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Coding sequence (CDS) from alignment at CM002471.1:386669..387454-

>rna7347 ID=rna7347|Name=rna7347|organism=Nannochloropsis gaditana|type=CDS|length=465bp|location=Sequence derived from alignment at CM002471.1:386669..387454- (Nannochloropsis gaditana)
GTTCGCTACCATCTTATCGATAACGCAACTGTCTTCACCGACGCTCTGGC
TCATCACGTGCCCTTCGATCAGCATTTTGTCGCGTCCTGTGTACCGGAAC
AGAAGGATATGTCAATTCTGCGGAGCATGCATCGCCAAGCTAAAACTGTT
GACTGCGTACAAAATAGTGGGGCAGAAAACAAGCACAACTTTGTCACCAT
GGCTTTCGAGACAACTTGCTCAGTAGAAGACGTGGAGATGGCACTTAAGC
TGGGGTTGATTCGGGTAGGGGTGCAGCTGAGTGGATTTGCCAAAAAACCC
GTGCGTAAAGGCTTCATCACGTGTCAAGACATGTTGGAAGTGCTGCCGTT
TGACGAAGAAGACCATGATGATTCAATCGAGAGCTTTGACTTCGATGAGG
ATGAGTTTTGGGAGGAGGAGTGGGACGAGCCTCGTGCCGCACAAAAGAAA
CGCAACAGGATGTGA
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Synonyms
Publications