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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100057g2.3905.mrna |
| Orig protein id | gnl|cribi|Naga_100057g2.3905 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002471.1 | supercontig | CM002471.1:383231..386740 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7346 ID=rna7346|Name=rna7346|organism=Nannochloropsis gaditana|type=mRNA|length=1180bp
GACTCACAATACCGTCATCATACAACGTCTACATTGCAAGCATCTGTTGC
GGGATCCTGTCAGATCTATGAATTTGTCGGCGGCAAACGGAACTGCTTGC
ACTCGCCGGCATCGCACCTCCTGAGGCCGCCTTCTGTGTAAATCTTCTCG
TTCCATGGAAAGTTTGGCATTTCTGACAGGCAAAACTCATTGATACTCAA
TACGACAGGGCACAACTCGATATTCTTGCCAACTGATGAGCAGTGGAGCA
GGTGCGCGTATCGGCGTCGGGGGGAATTCTGATGGATTGATAGACCGGGA
GAAGGTCACGCCCTCGTTACTCCGCGTCTTCTGGAAAGAGCATGGGCATA
ATAGCGACCTTGACTATGGGCGGGATGGGAAACAACTCCCGGGACGGCAG
CTGCATTTTTACACATGGCCCGACGCCACCTTGAAGGAGCTAAGCCAGCT
CTTGAAAGACGTGGTGCCTTGCGCCCGACGCCGCGGCTCTCGCATGGAGT
TTTCGTTGGTATACCCAGGGCCGGAGGGGAGGACGCGGATGCGGATGGTG
GGGTCGGTGCGGAACAGCGGTCGCAGCCCCGAGGACGCGAAAACCTTGCG
AGACTGCAAGTACCAGATTGGCGACCATCTCGACATTGCGGTGATGGATG
AGGGGGGCGCAGGTGGAGGACTAAGAGGATACGGAGGAGGGGGGGGAGAG
GGGGAGGGGGGTACCGCAATGGGGGTGATGGCTTGAGCAGGCGGGATATG
GAAAGCAGGGGCCGAGGATCGGGTGGCTTTCGTCACAGGGGAGGGACAGG
GCCAGATTTTCTGGATCGCTAGAGAGATGGAAGGCTCTGCGTCCGGGAGT
TCTGCCACTTGGGACGCGGGTGTTGAGAGGATGGGAAAGTAAGGGAGATA
CTGCAGTGAGGGACACGGCTCTACGTTGCGCCTTTCTTTACACCTTACTT
GTCAGCACTTCGAGGAGCCGGCTATAGTCCACTCTCTTTCACGTGACTTC
CATCTAATCTGTTAAAACAGTTTAACCCCTGTCTCCGGATCTCACGCCCC
TCTCTGCGACTGCTGCAGCGCCAGGGAGACCACGTCAACCTGCTCACTCA
ATTGCGCCACTCTCAGCTTCGCTTCCACAAGCGCTTCTTGATACGCGTCC
CTCTCTTCCGCCAGTATGGCCACCTCGCTC back to topprotein sequence of rna7346 >rna7346-protein ID=rna7346-protein|Name=rna7346|organism=Nannochloropsis gaditana|type=polypeptide|length=1034bp
MLAGEAVDVQVVAKQRGRRQACYSCRPVSVMPSFALGLISFLFFQLGNIN
AFVLPCWVSSFMDRGHFRPHAVVQEEDRRAISRVKPTSSNLASRFRNASP
PNEIHDSILDADMDFFAVVSAKSTGRFPENGTTPTPSVPLNLVTETVSWL
SDKWYGIVSKKTREASRLRIVGEGMGLGPKNETRSTRTGPQAGRGGNEGT
ESISGPGHKQTGGLMGQNKAKKKGNEAASLRRGSAGGGVKKTMKAFADGW
SVSAGAWAARAKASGLGAWSGLRSKVSTLLPKSMERIGARMKKKRKGAAG
RGRPGSARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRID
PSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEF
PRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGARPKAAR
VKQGPLYATPLVLRQKKAKAAVAASASTAWPQVSGPGGEGDTEREKMELE
ALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAM
EGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDR
LDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVALPPFPSRPPMEDE
YWPVPASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWL
KRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGN
RLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLP
EASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGGTRALLKEAGRV
GLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFE
GGKEEEEAKDGKSMSIDDPTVLALTELERELKGRGQVGGNGGDDDPMARI
EDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQ
LREESLRGDERWRSQNERLGALLRIHEGQRKIIW back to topmRNA from alignment at CM002471.1:383231..386740+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7346 ID=rna7346|Name=rna7346|organism=Nannochloropsis gaditana|type=mRNA|length=3510bp|location=Sequence derived from alignment at CM002471.1:383231..386740+ (Nannochloropsis gaditana)
CGTCTCTTCCTGTTCCAAggcccctcatcctctcgGCTCTTTTCTTGCAA
TCTAGGCATTCCATACACATGCACACCGACATATAGCTTCATGGATTCGC
ATTTCTTCTAAGGTGCTTGAAGTTATGTTAGCGGGGGAGGCCGTCGACGT
CCAGGTTGTGGCTAAGcagcgtgggaggaggcaagcgtGCTACTCATGCA
GACCGGTCTCCGTAATGCCGTCCTTTGCCTTGGGGCTTATTTcgttcctt
ttttttcagcTAGGAAATATCAACGCTTTTGTACTACCGTGTTGGGTCTC
GAGTTTCATGGATCGCGGCCATTTTCGTCCTCATGCCGTGGTTCAAGAAG
AAGATCGCCGAGCTATCAGCAGAGTCAAGCCAACTTCCTCCAATCTTGCA
TCAAGATTTCGCAACGCCTCGCCACCCAATGAAATACATGATTCAATATT
GGACGCTGATATGGATTTTTTTGCTGTGGTTTCTGCGAAATCTACGGGCC
GTTTTCCTGAAAATGGAACGACGCCGACGCCCTCGGTCCCCCTCAACCTG
GTCACTGAGACGGTCTCCTGGCTCTCTGACAAATGGTACGGCATAGTGTC
GAAAAAGACGCGAGAAGCCTCTCGTTTGCGGATAGTCGGTGAGGGGATGG
GCCTCGGACCAAAAAATGAGACAAGAAGCACGAGGACTGGTCCTCAGgcc
ggacggggagggaacgagggaacCGAGAGCATCTCAGGACCCGGGCACAA
GCAGACTGGTGGCCTAATGGGACAAAATAaagcgaagaagaaaggcaacG
AGGCGGCAAGTCTGCGTCGGGGGagtgcggggggaggtgtgAAGAAAACA
ATGAAAGCCTTTGCGGATGGGTGGAGCGTGAGCGCAGGGGCGTGGGCGGC
GCGTGCGAAGGCCTCGGGCCTCGGGGCCTGGTCTGGCCTTCGTTCCAAGG
TGTCAACACTTCTTCCAAAATCTATGGAGCGGATCGGTGCGAGGATGAAA
AAGAAGCGGAAAGGGGCCGCCGGCCGGGGGAGACCGGGGTCAGCGCGGTC
GCCCCGGGAGCAGATGGCGGAGCAACGGAAGAAAAGACAAGCCGGCAAGC
CCGCTGACAGCGGCGCTAGGAGCGGAGTGAATCTGAAAAGCTTCTTGCTG
CCATCTCTGCTGCAGCGGATCGATCCATCCGCCTACAGTGCCGGTGTGTG
GCGGCAGACCGTGTTCCCAGGTCAAGGCGAACGGGGCCggccggggcggg
aagaggggccggaTGCGGTGGACCTGGAGCCTCCCTCAGGCCGGCCGCCG
GTCTTCGACGACCTCGTGGAGTTCCCACGTGGCCCCGCGGAGGCCTGGGA
CCTGTTCGTGGGGGACGCGCGGCATTTGGCGGACTCGATCTATCGGCTCC
TGGCCCCAGCAGCTGCGCTGCCCAAGGCGGGCCCCAGCCGTCCCCAGGTA
GGCGCGCGGCCAAAGGCAGCTAGGGTCAAGCAAGGGCCCTTGTATGCGAC
CCCGCTCGTCCTGCGCCAGAAGAAAGCCAAGGCAGCGGTGGCGGCTAGCG
CCTCGACAGCATGGCCCCAGGtgtcggggccggggggggagggagacacg
gagagggagaagatggagctTGAGGCCCTTGATTGGGCGGATCATGGGGT
cgacatggagaaggaggagcagggggacgcCGAGAGCGAGGTCTGGCAAG
GCTTACGGGGACGAGTGCGGGAGATGATcgaggagagcgcgggcGCCCCC
TCTGGGGCAGAGTACTAcgcgatggagggggcgggaagcgagccgcggga
gcaggagacggGGGCAGGGCGTTCCACGCCTTCATCTAGgccaggagagg
aaaggcaggagcgCCGTCCGAGCAGGGCCAGAAACCTTCCCGTGCCTCTG
CGGGCGCCGCGCCTGGTTGACCGCCTGGACGAGCGGCCCCGCGGGATCGC
CGCCGCAGGATCCTCTTTGCCAGTGACTCCGGCTGCAGCTTCTGAGACCT
TTAGCGACGAGAGGATCATGGACGCGCGCGTGGCTTtgccgcctttcccc
tcacGACCgcccatggaggacgagtaCTGGCCCGTCCCCGCGTCCTCAGC
GTTTCATGCCTCTTCTgccttcgacgaggaggaagagatgggcgAGGGTA
GGGccgaagaggatggagaggattTGGACGACACTGCAGTTGCGCCCTGG
CGCCGGGGCCTACCTGAATGGCTGAAGCGCGTGAGCCTCACTCGTCTGCT
GGTCAGAAAACCAACCCCCGAGCGGATGCTGGAGGTAATCCGTCGGCGGC
AGCAGGTGCGACGGATGCCCCGCAAGATGGAtgacgccttcctccgcact
GTCTCCCGAAAGTTGCAAGGGAACCGACTCCGCATTCGGTCCTTTCAGCT
CCAGACCGACAGGTACCGCAACTCCCTGCTCTCGGCGGGCGCCTATGTGG
ACGCCGTGGTGTCCCTCTTTGGCTCTGCcaaggaggctgaggaggttCTC
TTGCCTTTGACGCGGTGGCTCCCCGAGGCCTCCAAGCGCCGAGGCCTCTC
GGATGAGTACTGGGCGCGGCGCCGGGCCCGGCTTGGCGGTTTGCAGACAG
TTGAGTCGCGCCAAGGGGGTGAAGGGAGTGCGGCCGGGGGCACCCGGGCG
CTCCTGAAGGAGGCTGGGCGGGTGGGGTTGACGGCATCGACGGCTTGGAT
GGCGAGGATGAAGGCAGCGGTATCAGAGCGGGTGGTCGGGTTGACGCGAG
GGCTGGAAGAGCTCGGACGGGCTCTGGGTAGTATTACCTGCGGCAAAAGC
ACACTCATTGAATTGTCTTTCGagggtggaaaagaagaggaggaagctaa
GGATGGGAAAAGCATGAGTATTGACGATCCCACCGTGTTGGCCTTGACAG
AACTAGAGCGCGAGCTGAAAGGACGGGGGCAAGTCGGTGGGAATGGGGGC
GATGACGACCCCATGGCCCGCATTGAGGACATATTAGGGGACAGAAATGC
GGCCTATTTTCAGCAGCGGTTGGACCTATACATGCGGGGGGGGCTCTCGG
GTATGGATCTTTATCGCGCTTTAAAGCGCCTGTGCCTGGCAAATGAGATG
CGACTAGATCTGGTAATGCGGCAGCTGCGCGAAGAGTCTTTGCGGGGCGA
TGAAAGGTGGCGTAGCCAGAATGAGAGATTGGGGGCCTTGCTACGGATTC
ATGAGGGACAGAGGAAAATCATCTGGTAGTGGTCTTCGGAGCCTGTATCA
GTACTGTGCTGGGTGTTTAGACAAAGGGAGGTTTATCGAATTGGAGATTC
TCCATTGATGATGTACTTGCTTGCAGTGACCATGCATACACTCTCCGCTC
CTTGTACACATGTAGTATTATGACACGACATTTTATTTGTCCATAAGCAT
TAAAATGCTAAAAAAATGTAATGAATTTGACAAGACACGCATTATGCTCT
ATCACGTGCCACCCGTGTATTGTTATTTCTTGTTTATAGATTTTTCTTAG
ATCTGCGTAA back to topCoding sequence (CDS) from alignment at CM002471.1:383231..386740+ >rna7346 ID=rna7346|Name=rna7346|organism=Nannochloropsis gaditana|type=CDS|length=3105bp|location=Sequence derived from alignment at CM002471.1:383231..386740+ (Nannochloropsis gaditana)
ATGTTAGCGGGGGAGGCCGTCGACGTCCAGGTTGTGGCTAAGcagcgtgg
gaggaggcaagcgtGCTACTCATGCAGACCGGTCTCCGTAATGCCGTCCT
TTGCCTTGGGGCTTATTTcgttccttttttttcagcTAGGAAATATCAAC
GCTTTTGTACTACCGTGTTGGGTCTCGAGTTTCATGGATCGCGGCCATTT
TCGTCCTCATGCCGTGGTTCAAGAAGAAGATCGCCGAGCTATCAGCAGAG
TCAAGCCAACTTCCTCCAATCTTGCATCAAGATTTCGCAACGCCTCGCCA
CCCAATGAAATACATGATTCAATATTGGACGCTGATATGGATTTTTTTGC
TGTGGTTTCTGCGAAATCTACGGGCCGTTTTCCTGAAAATGGAACGACGC
CGACGCCCTCGGTCCCCCTCAACCTGGTCACTGAGACGGTCTCCTGGCTC
TCTGACAAATGGTACGGCATAGTGTCGAAAAAGACGCGAGAAGCCTCTCG
TTTGCGGATAGTCGGTGAGGGGATGGGCCTCGGACCAAAAAATGAGACAA
GAAGCACGAGGACTGGTCCTCAGgccggacggggagggaacgagggaacC
GAGAGCATCTCAGGACCCGGGCACAAGCAGACTGGTGGCCTAATGGGACA
AAATAaagcgaagaagaaaggcaacGAGGCGGCAAGTCTGCGTCGGGGGa
gtgcggggggaggtgtgAAGAAAACAATGAAAGCCTTTGCGGATGGGTGG
AGCGTGAGCGCAGGGGCGTGGGCGGCGCGTGCGAAGGCCTCGGGCCTCGG
GGCCTGGTCTGGCCTTCGTTCCAAGGTGTCAACACTTCTTCCAAAATCTA
TGGAGCGGATCGGTGCGAGGATGAAAAAGAAGCGGAAAGGGGCCGCCGGC
CGGGGGAGACCGGGGTCAGCGCGGTCGCCCCGGGAGCAGATGGCGGAGCA
ACGGAAGAAAAGACAAGCCGGCAAGCCCGCTGACAGCGGCGCTAGGAGCG
GAGTGAATCTGAAAAGCTTCTTGCTGCCATCTCTGCTGCAGCGGATCGAT
CCATCCGCCTACAGTGCCGGTGTGTGGCGGCAGACCGTGTTCCCAGGTCA
AGGCGAACGGGGCCggccggggcgggaagaggggccggaTGCGGTGGACC
TGGAGCCTCCCTCAGGCCGGCCGCCGGTCTTCGACGACCTCGTGGAGTTC
CCACGTGGCCCCGCGGAGGCCTGGGACCTGTTCGTGGGGGACGCGCGGCA
TTTGGCGGACTCGATCTATCGGCTCCTGGCCCCAGCAGCTGCGCTGCCCA
AGGCGGGCCCCAGCCGTCCCCAGGTAGGCGCGCGGCCAAAGGCAGCTAGG
GTCAAGCAAGGGCCCTTGTATGCGACCCCGCTCGTCCTGCGCCAGAAGAA
AGCCAAGGCAGCGGTGGCGGCTAGCGCCTCGACAGCATGGCCCCAGGtgt
cggggccggggggggagggagacacggagagggagaagatggagctTGAG
GCCCTTGATTGGGCGGATCATGGGGTcgacatggagaaggaggagcaggg
ggacgcCGAGAGCGAGGTCTGGCAAGGCTTACGGGGACGAGTGCGGGAGA
TGATcgaggagagcgcgggcGCCCCCTCTGGGGCAGAGTACTAcgcgatg
gagggggcgggaagcgagccgcgggagcaggagacggGGGCAGGGCGTTC
CACGCCTTCATCTAGgccaggagaggaaaggcaggagcgCCGTCCGAGCA
GGGCCAGAAACCTTCCCGTGCCTCTGCGGGCGCCGCGCCTGGTTGACCGC
CTGGACGAGCGGCCCCGCGGGATCGCCGCCGCAGGATCCTCTTTGCCAGT
GACTCCGGCTGCAGCTTCTGAGACCTTTAGCGACGAGAGGATCATGGACG
CGCGCGTGGCTTtgccgcctttcccctcacGACCgcccatggaggacgag
taCTGGCCCGTCCCCGCGTCCTCAGCGTTTCATGCCTCTTCTgccttcga
cgaggaggaagagatgggcgAGGGTAGGGccgaagaggatggagaggatt
TGGACGACACTGCAGTTGCGCCCTGGCGCCGGGGCCTACCTGAATGGCTG
AAGCGCGTGAGCCTCACTCGTCTGCTGGTCAGAAAACCAACCCCCGAGCG
GATGCTGGAGGTAATCCGTCGGCGGCAGCAGGTGCGACGGATGCCCCGCA
AGATGGAtgacgccttcctccgcactGTCTCCCGAAAGTTGCAAGGGAAC
CGACTCCGCATTCGGTCCTTTCAGCTCCAGACCGACAGGTACCGCAACTC
CCTGCTCTCGGCGGGCGCCTATGTGGACGCCGTGGTGTCCCTCTTTGGCT
CTGCcaaggaggctgaggaggttCTCTTGCCTTTGACGCGGTGGCTCCCC
GAGGCCTCCAAGCGCCGAGGCCTCTCGGATGAGTACTGGGCGCGGCGCCG
GGCCCGGCTTGGCGGTTTGCAGACAGTTGAGTCGCGCCAAGGGGGTGAAG
GGAGTGCGGCCGGGGGCACCCGGGCGCTCCTGAAGGAGGCTGGGCGGGTG
GGGTTGACGGCATCGACGGCTTGGATGGCGAGGATGAAGGCAGCGGTATC
AGAGCGGGTGGTCGGGTTGACGCGAGGGCTGGAAGAGCTCGGACGGGCTC
TGGGTAGTATTACCTGCGGCAAAAGCACACTCATTGAATTGTCTTTCGag
ggtggaaaagaagaggaggaagctaaGGATGGGAAAAGCATGAGTATTGA
CGATCCCACCGTGTTGGCCTTGACAGAACTAGAGCGCGAGCTGAAAGGAC
GGGGGCAAGTCGGTGGGAATGGGGGCGATGACGACCCCATGGCCCGCATT
GAGGACATATTAGGGGACAGAAATGCGGCCTATTTTCAGCAGCGGTTGGA
CCTATACATGCGGGGGGGGCTCTCGGGTATGGATCTTTATCGCGCTTTAA
AGCGCCTGTGCCTGGCAAATGAGATGCGACTAGATCTGGTAATGCGGCAG
CTGCGCGAAGAGTCTTTGCGGGGCGATGAAAGGTGGCGTAGCCAGAATGA
GAGATTGGGGGCCTTGCTACGGATTCATGAGGGACAGAGGAAAATCATCT
GGTAG back to top
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