EWM23346.1, cds7329 (CDS) Nannochloropsis gaditana

Overview
NameEWM23346.1
Unique Namecds7329
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:383355..386459 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23346.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g2.3905.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:383355..386459 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23346.1 vs. NCBI_GenBank
Match: gi|585104354|gb|EWM23346.1| (hypothetical protein Naga_100057g2 [Nannochloropsis gaditana])

HSP 1 Score: 2066.2 bits (5352), Expect = 0.000e+0
Identity = 1034/1034 (100.00%), Postives = 1034/1034 (100.00%), Query Frame = 0
Query:    1 MLAGEAVDVQVVAKQRGRRQACYSCRPVSVMPSFALGLISFLFFQLGNINAFVLPCWVSSFMDRGHFRPHAVVQEEDRRAISRVKPTSSNLASRFRNASPPNEIHDSILDADMDFFAVVSAKSTGRFPENGTTPTPSVPLNLVTETVSWLSDKWYGIVSKKTREASRLRIVGEGMGLGPKNETRSTRTGPQAGRGGNEGTESISGPGHKQTGGLMGQNKAKKKGNEAASLRRGSAGGGVKKTMKAFADGWSVSAGAWAARAKASGLGAWSGLRSKVSTLLPKSMERIGARMKKKRKGAAGRGRPGSARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGARPKAARVKQGPLYATPLVLRQKKAKAAVAASASTAWPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVALPPFPSRPPMEDEYWPVPASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGGTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMSIDDPTVLALTELERELKGRGQVGGNGGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW 1034
            MLAGEAVDVQVVAKQRGRRQACYSCRPVSVMPSFALGLISFLFFQLGNINAFVLPCWVSSFMDRGHFRPHAVVQEEDRRAISRVKPTSSNLASRFRNASPPNEIHDSILDADMDFFAVVSAKSTGRFPENGTTPTPSVPLNLVTETVSWLSDKWYGIVSKKTREASRLRIVGEGMGLGPKNETRSTRTGPQAGRGGNEGTESISGPGHKQTGGLMGQNKAKKKGNEAASLRRGSAGGGVKKTMKAFADGWSVSAGAWAARAKASGLGAWSGLRSKVSTLLPKSMERIGARMKKKRKGAAGRGRPGSARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGARPKAARVKQGPLYATPLVLRQKKAKAAVAASASTAWPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVALPPFPSRPPMEDEYWPVPASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGGTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMSIDDPTVLALTELERELKGRGQVGGNGGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW
Sbjct:    1 MLAGEAVDVQVVAKQRGRRQACYSCRPVSVMPSFALGLISFLFFQLGNINAFVLPCWVSSFMDRGHFRPHAVVQEEDRRAISRVKPTSSNLASRFRNASPPNEIHDSILDADMDFFAVVSAKSTGRFPENGTTPTPSVPLNLVTETVSWLSDKWYGIVSKKTREASRLRIVGEGMGLGPKNETRSTRTGPQAGRGGNEGTESISGPGHKQTGGLMGQNKAKKKGNEAASLRRGSAGGGVKKTMKAFADGWSVSAGAWAARAKASGLGAWSGLRSKVSTLLPKSMERIGARMKKKRKGAAGRGRPGSARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGARPKAARVKQGPLYATPLVLRQKKAKAAVAASASTAWPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVALPPFPSRPPMEDEYWPVPASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGGTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMSIDDPTVLALTELERELKGRGQVGGNGGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW 1034          
BLAST of EWM23346.1 vs. NCBI_GenBank
Match: gi|553194530|ref|XP_005855980.1| (hypothetical protein NGA_0524500 [Nannochloropsis gaditana CCMP526] >gi|422293088|gb|EKU20389.1| hypothetical protein NGA_0524500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1686.39 bits (4366), Expect = 0.000e+0
Identity = 856/860 (99.53%), Postives = 857/860 (99.65%), Query Frame = 0
Query:  175 MGLGPKNETRSTRTGPQAGRGGNEGTESISGPGHKQTGGLMGQNKAKKKGNEAASLRRGSAGGGVKKTMKAFADGWSVSAGAWAARAKASGLGAWSGLRSKVSTLLPKSMERIGARMKKKRKGAAGRGRPGSARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGARPKAARVKQGPLYATPLVLRQKKAKAAVAASASTAWPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVALPPFPSRPPMEDEYWPVPASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGGTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMSIDDPTVLALTELERELKGRGQVGGNGGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW 1034
            MGLGPKNETRSTRTGPQAGR GNEGTESISGPGHKQTGGLMGQNKAK+KGNEAASLRRGSAGG VKKTMKAFADGWSVSAGAWAARAKASGLGAWSGLRSKVSTLLPKSMERIGARMKKKRKGAAGRGRPGSARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGARPKAARVKQGPLYATPLVLRQKKAKAAVAASASTAWPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARV LPPFPSRPPMEDEYWPVPASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGGTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMSIDDPTVLALTELERELKGRGQVGGNGGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW
Sbjct:    1 MGLGPKNETRSTRTGPQAGREGNEGTESISGPGHKQTGGLMGQNKAKEKGNEAASLRRGSAGG-VKKTMKAFADGWSVSAGAWAARAKASGLGAWSGLRSKVSTLLPKSMERIGARMKKKRKGAAGRGRPGSARSPREQMAEQRKKRQAGKPADSGARSGVNLKSFLLPSLLQRIDPSAYSAGVWRQTVFPGQGERGRPGREEGPDAVDLEPPSGRPPVFDDLVEFPRGPAEAWDLFVGDARHLADSIYRLLAPAAALPKAGPSRPQVGARPKAARVKQGPLYATPLVLRQKKAKAAVAASASTAWPQVSGPGGEGDTEREKMELEALDWADHGVDMEKEEQGDAESEVWQGLRGRVREMIEESAGAPSGAEYYAMEGAGSEPREQETGAGRSTPSSRPGEERQERRPSRARNLPVPLRAPRLVDRLDERPRGIAAAGSSLPVTPAAASETFSDERIMDARVPLPPFPSRPPMEDEYWPVPASSAFHASSAFDEEEEMGEGRAEEDGEDLDDTAVAPWRRGLPEWLKRVSLTRLLVRKPTPERMLEVIRRRQQVRRMPRKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGGTRALLKEAGRVGLTASTAWMARMKAAVSERVVGLTRGLEELGRALGSITCGKSTLIELSFEGGKEEEEAKDGKSMSIDDPTVLALTELERELKGRGQVGGNGGDDDPMARIEDILGDRNAAYFQQRLDLYMRGGLSGMDLYRALKRLCLANEMRLDLVMRQLREESLRGDERWRSQNERLGALLRIHEGQRKIIW 859          
BLAST of EWM23346.1 vs. NCBI_GenBank
Match: gi|298714078|emb|CBJ33841.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.4774 bits (171), Expect = 1.593e-8
Identity = 44/107 (41.12%), Postives = 58/107 (54.21%), Query Frame = 0
Query:  733 RKMDDAFLRTVSRKLQGNRLRIRSFQLQTDRYRNSLLSAGAYVDAVVSLFGSAKEAEEVLLPLTRWLPEASKRRGLSDEYWARRRARLGGLQTVESRQGGEGSAAGG 839
            + MDD+FL+ VS  L+ N+ +I+ FQ  TDR+R  L+ A  Y   V  LFG     EE++ PL   LPE  KR+ L   Y   +RA+ G     ES  GG  S  GG
Sbjct:  785 KTMDDSFLKKVSVMLRRNQSKIKKFQQLTDRFRGGLIKAPVYYAGVEELFGE-DNVEEIIGPLLAALPENDKRKTLQAVYSKAQRAKNG---EGESDGGGIASLFGG 887          
The following BLAST results are available for this feature:
BLAST of EWM23346.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104354|gb|EWM23346.1|0.000e+0100.00hypothetical protein Naga_100057g2 [Nannochloropsi... [more]
gi|553194530|ref|XP_005855980.1|0.000e+099.53hypothetical protein NGA_0524500 [Nannochloropsis ... [more]
gi|298714078|emb|CBJ33841.1|1.593e-841.12expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7346rna7346Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications