rna7345, rna7345 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7345
Unique Name	rna7345
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3437
Alignment location	CM002471.1:381675..383153 -

Link to JBrowse

Properties


Property Name	Value
Product	histone deacetylase complex subunit sap18
Orig transcript id	gnl\|cribi\|Naga_100057g3.3909.mrna
Orig protein id	gnl\|cribi\|Naga_100057g3.3909
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:381675..383153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g3	gene7109	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7345	rna7345-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23350.1	cds7328	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:381675..383153-
coding sequence from alignment at CM002471.1:381675..383153-

mRNA sequence

>rna7345 ID=rna7345|Name=rna7345|organism=Nannochloropsis gaditana|type=mRNA|length=3437bp
AGGTACACGGACTCCGGAATAAATTCATCAATAGTCTTGCTCCTACGCGA
AAGACTGGGGTTTGCCCGAGGAGCTACTGGGAATTTTATAGCTTTCTCAG
GCCTCCAGCGGTAGAACTGGAACGTCTCACAACATCGTCCTTCCTTCAGC
CATTGTTGCATCGACGCAGCATCAACAATGTCTCAATTTTTCCGCTCTGC
CTCGCGCTTGAATAAGACCAAGTACACCTTTCAGCTTGTGGTAAGCATCA
AGCATGTGCGTCTTCATCCAATGCATAATGAGAAAGAAGTCATAGTGATC
ATGAAAAAAGGCGGAAACAAAAGTACTTGTACAGCGACTCCTCGGAAGCC
CGGTGCATGGAGTGAAACACTGTCTATGGTTGTTACATTATATCGTGACT
CACATGGGCGCTACCAGGAGAAGAAGTATACGTTTTTGGTGAAGCAAGCC
GGAACAAACAAGACACTTGCTACGTTTAAATTGGATGCATCCCATTTCGC
CTCCGCTGCGGGCACAAAAGAACAATGTTCATTGCAAAGCATCAACCCTA
AGGATGATGGTCGTATAGTGGTTGAGGTGAGCTGCGCTTTCTTGCGACAG
TTGGAGAGTCAGGGGAGTGAGGTGTCCAGTGTAATTTCTAGCATCTCTGG
CGAGGAGCTTGGGGAGGAGCAGGACCTTAGCGGTTGGGGGGCGGGCGGCG
AGGTGGACGTCGGGGATGAGCCAGCAGGACACTCACTCGGAGGATTCGCT
TCCTCCAATGCTTCCCCTTCTTCCCCGCTTTCGCCCGCAGTCGCGGCGGC
CCCGAGAAAGGGTCCTTACCCTTCCTCCTCAGCAACGCCCACTGGCGCCG
TCCCCGCCCTGTCAAGTTCTCGGTTGCCAAATGCCCCACGACAATCTTGC
CTTCGGCCCCCGCGTCAGACCCCCTCATCGCCAGCAAGGCCTCAAGCGCA
AGTTAGCACGCTTCCTCAGGCAACGGCCTCTTTTGTTCAAGAGAGAGAGG
AGTTGCTGGAGCGTCTGACCCGACTGGAAGATGCGAACGCGGCTTTGTCG
GCGGACAAGGCCGCCAAAGAGCAGGATGTATTGAGCCTGCGGGCAGAAAG
AGCCAAGGATCGGCGGCTGCTGCAAGAGCAGGCGGCTGTGAGAGAGGAGA
CGCTGTGCGAGTTCCAAAGGCGAGCCGAGGAGCTCGAGAGGGCGGCCAAG
GACCGAGACGCCGAGCTGAGCCGGGTTAAGGAAGCGCTAGCCAAGAGGGA
GGTTGATGTGAGCACAAGGGTGGAGAAGGAGACAGGGGTGGAGAAGGAGT
CACACACAAGAATGCTTGTACAGGAAGCAGAGGAGAGATGGGAAGCAATG
CGACGGGCGAAGGAGGAGCAGGAGCTGGAGTCGACGAGGGCGAGGGCGGC
TGCAGCCGCAGAAATTGAACGTCTGAGGTGCGAGGTGCTGCGCCTGAAGC
AGGCGGCCTCGAGCCCGGAACTATGTGTATCACCGGAGCGACGGATCGTG
GGGGCCGATGAGGGAGGGGGTGAGGGTCGGGCGGAGGGTCGGGCGGGTGA
GGTTGGAGGGGCGGAGACTTCGACCGGGAGTGGGGTCGAGGGAGTGCAGG
AGGAGCGGCTGGCTTTAGTTGAAAGAAACGCAGAGCTAATGGCCCGTCTG
ACAGAATTTGAGACGGAGACGGAAGAAAGAAGTGATCGCCTGGAGAGAGT
GGAAAGGGAGCGCAGTGAGCTTACCTTGCGGATGGCTGAGATGGAAAAGA
CAGAAGAAGCGCGTCGGGCGCGAGAGGCAGAGGCTGGAGCGAGGGAGCTG
AAAGAGGTTGTAGCTCTACGAGCACAGGTCATGGAGTTGGAAAGGCAACG
GCGAAGTGCGATGAAGGAGGCAGCCGCCATGCAAGCAGAGGCAGCGGAGA
TGGAGATGAGGGTGAAAAGAGCCGAGGAGATAAAAGAGGCGTCAGAGGGC
TCGGTCCACACTGCGGGGGATCACGGCGAGCAAGGCCAGCTGGTTGAGAG
AGAGGCCTGTCAATGGGAGGCGGAGAAGTCAGGGCTCGAGGCAGAGGTAA
AAAGGCTGGAAGGAGACATAAAGACGGCGCACATCTCTCTGCAAGCAGCC
GTGAAGTCGAAAGAGGACATGGTTGCCGAGCACGCGGCAGAGATGAGGGA
GCTAGTGCGAGAGACAGAGCGCATGGCTATTTTGATAGATGAGCTGGGCG
CTGACAAGACGCGCCTGGAGGCTGAGGTCGAGGAAATCCGCGCGCAAACG
GCGTCCCGACGTGAAGAAGAGGAGAGGGCACGCGAGGCTCAGAGAGCCAG
CTTCCAGATTGAGAAGAAGGAGCTCGAAAAAAGGAAACAGGAGGCAGAGG
CCGCACTCGCAGCGGCAGACAGAGAGGCGGAGCAATTGCGCAAACGAGGA
GAGCAGGACATGGAGGAGGTGGCGGCGTGGTGGACAGAGAGGCAAGGGCT
GATGGCGCGTCTGCAGGCGCTCGAAGGGGAGAAGGAGCATCTGGTGTCTG
CTCGCGAAGAAGAGCGAGGGCGTCTGGCGGCCGAGTTGGAGAAGAGGGAA
GAGGATCTTACCGCCTGGCTGCAGGAGAAGGCAAGCTTGGTGGAGCGCGT
GGGTGAGCTGGAGGAGGAGATGGCGAAGGGGCGGGAGGAAGAGATGGTGG
CGCGGCGATCCTTGAGGCAAGCGCAAGAGGCCATGGAGGAGCAGGCGGCG
ACTGAGCGGGAGCTGGAACGGAACGTGCAGCTCCTGCAGGCTCAGGTAAT
GCACGGGGAAAGCCGTGTGCGCGAGGCGGAGGCCGCCTGCTCACTGGCAG
AGCGCGCGGCGACGGGGGCTCTCGGGCAGGTACGGGAGATCGAGAGCGAG
GTGGCCATACTGGCGGAAGAGAGGGACGCGTATCAAGAAGCGCTTGTGGA
AGCGAAGCTGAGAGTGGCGCAATTGAGTGAGCAGGTTGACGTGGTCTCCC
TGGCGCTGCAGCAGTCGCAGAGAGGGGCGTGAGATCCGGAGACAGGGGTT
AAACTGTTTTAACAGATTAGATGGAAGTCACGTGAAAGAGAGTGGACTAT
AGCCGGCTCCTCGAAGTGCTGACAAGTAAGGTGTAAAGAAAGGCGCAACG
TAGAGCCGTGTCCCTCACTGCAGTATCTCCCTTACTTTCCCATCCTCTCA
ACACCCGCGTCCCAAGTGGCAGAACTCCCGGACGCAGAGCCTTCCATCTC
TCTAGCGATCCAGAAAATCTGGCCCTGTCCCTCCCCTGTGACGAAAGCCA
CCCGATCCTCGGCCCCTGCTTTCCATATCCCGCCTGCTCAAGCCATCACC
CCCATTGCGGTACCCCCCTCCCCCTCTCCCCCCCCTCCTCCGTATCCTCT
TAGTCCTCCACCTGCGCCCCCCTCATCCATCACCGCAATGTCGAGATGGT
CGCCAATCTGGTACTTGCAGTCTCGCAAGGTTTTCGC

protein sequence of rna7345

>rna7345-protein ID=rna7345-protein|Name=rna7345|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQ
LPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRT
RMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEGGAGGGLRGYG
GGGGEGEGGTAMGVMA

mRNA from alignment at CM002471.1:381675..383153-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7345 ID=rna7345|Name=rna7345|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp|location=Sequence derived from alignment at CM002471.1:381675..383153- (Nannochloropsis gaditana)
GACTCACAATACCGTCATCATACAACGTCTACATTGCAAGCATCTGTTGC
GGGATCCTGTCAGATCTATGAATTTGTCGGCGGCAAACGGAACTGCTTGC
ACTCGCCGGCATCGCACCTCCTGAGGCCGCCTTCTGTGTAAATCTTCTCG
TTCCATGGAAAGTTTGGCATTTCTGACAGGCAAAACTCATTGATACTCAA
TACGACAGGGCACAACTCGATATTCTTGCCAACTGATGAGCAGTGGAGCA
GGTGCGCGTATCGGCGTCGGGGGGAATTCTGATGGATTGATAGACCGGGA
GAAGGTGAGACCTCGTGTACGTCTGAGGGGGCATTCCATTACCTTATTGA
GCCATCGGTTTCTTGGCCGATGATTGGTGACAAGGAGTGATTCTGGTTCT
AAGCAATGACTGAAGATGAGTGGCATAAAAATTGTTTATGCCTTTACGTG
AGTGCAGAAACTTGCCGGGGTACGGAAAGGGAAGACTGAAATTTCATCTC
AGCGCAGTCAGCTTTGATGCCTGAAAGCAATGAAAAACCTTCCTTTTCAT
TTCTTTTGGCATCCGCTGGTGCTTGAATTTTCCCTGTTAATCTTGAACTA
CAGGTCACGCCCTCGTTACTCCGCGTCTTCTGGAAAGAGCATGGGCATAA
TAGCGACCTTGACTATGGGCGGGATGGGAAACAACTCCCGGGACGGCAGC
TGCATTTTTACACATGGCCCGACGCCACCTTGAAGGAGCTAAGCCAGCTC
TTGAAAGACGTGGTGCCTTGCGCCCGACGCCGCGGCTCTCGCATGGAGTT
TTCGTTGGTATACCCAGGGCCGGAGGGGAGGACGCGGATGCGGATGGTGG
GGTCGGTGCGGAACAGCGGTCGCAGCCCCGAGGACGCGAAAACCTTGCGA
GACTGCAAGTACCAGATTGGCGACCATCTCGACATTGCGGTGATGGATGA
GGGGGGCGCAGGTGGAGGACTAAGAGGATACGGAGGAGGGGGGGGAGAGG
GGGAGGGGGGTACCGCAATGGGGGTGATGGCTTGAGCAGGCGGGATATGG
AAAGCAGGGGCCGAGGATCGGGTGGCTTTCGTCACAGGGGAGGGACAGGG
CCAGATTTTCTGGATCGCTAGAGAGATGGAAGGCTCTGCGTCCGGGAGTT
CTGCCACTTGGGACGCGGGTGTTGAGAGGATGGGAAAGTAAGGGAGATAC
TGCAGTGAGGGACACGGCTCTACGTTGCGCCTTTCTTTACACCTTACTTG
TCAGCACTTCGAGGAGCCGGCTATAGTCCACTCTCTTTCACGTGACTTCC
ATCTAATCTGTTAAAACAGTTTAACCCCTGTCTCCGGATCTCACGCCCCT
CTCTGCGACTGCTGCAGCGCCAGGGAGACCACGTCAACCTGCTCACTCAA
TTGCGCCACTCTCAGCTTCGCTTCCACAAGCGCTTCTTGATACGCGTCCC
TCTCTTCCGCCAGTATGGCCACCTCGCTC

Coding sequence (CDS) from alignment at CM002471.1:381675..383153-

>rna7345 ID=rna7345|Name=rna7345|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at CM002471.1:381675..383153- (Nannochloropsis gaditana)
GTCACGCCCTCGTTACTCCGCGTCTTCTGGAAAGAGCATGGGCATAATAG
CGACCTTGACTATGGGCGGGATGGGAAACAACTCCCGGGACGGCAGCTGC
ATTTTTACACATGGCCCGACGCCACCTTGAAGGAGCTAAGCCAGCTCTTG
AAAGACGTGGTGCCTTGCGCCCGACGCCGCGGCTCTCGCATGGAGTTTTC
GTTGGTATACCCAGGGCCGGAGGGGAGGACGCGGATGCGGATGGTGGGGT
CGGTGCGGAACAGCGGTCGCAGCCCCGAGGACGCGAAAACCTTGCGAGAC
TGCAAGTACCAGATTGGCGACCATCTCGACATTGCGGTGATGGATGAGGG
GGGCGCAGGTGGAGGACTAAGAGGATACGGAGGAGGGGGGGGAGAGGGGG
AGGGGGGTACCGCAATGGGGGTGATGGCTTGAATGAGCAGTGGAGCAGGT
GCGCGTATCGGCGTCGGGGGGAATTCTGATGGATTGATAGACCGGGAGAA
GGTCACGCCCTCGTTACTCCGCGTCTTCTGGAAAGAGCATGGGCATAATA
GCGACCTTGACTATGGGCGGGATGGGAAACAACTCCCGGGACGGCAGCTG
CATTTTTACACATGGCCCGACGCCACCTTGAAGGAGCTAAGCCAGCTCTT
GAAAGACGTGGTGCCTTGCGCCCGACGCCGCGGCTCTCGCATGGAGTTTT
CGTTGGTATACCCAGGGCCGGAGGGGAGGACGCGGATGCGGATGGTGGGG
TCGGTGCGGAACAGCGGTCGCAGCCCCGAGGACGCGAAAACCTTGCGAGA
CTGCAAGTACCAGATTGGCGACCATCTCGACATTGCGGTGATGGATGAGG
GGGGCGCAGGTGGAGGACTAAGAGGATACGGAGGAGGGGGGGGAGAGGGG
GAGGGGGGTACCGCAATGGGGGTGATGGCTTGAATGAGCAGTGGAGCAGG
TGCGCGTATCGGCGTCGGGGGGAATTCTGATGGATTGATAGACCGGGAGA
AG

Synonyms

Publications