EWM23350.1, cds7328 (CDS) Nannochloropsis gaditana

Overview
NameEWM23350.1
Unique Namecds7328
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:382850..382918 -
Alignment locationCM002471.1:382119..382550 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23350.1
Producthistone deacetylase complex subunit sap18
Orig transcript idgnl|cribi|Naga_100057g3.3909.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:382850..382918 -
CM002471.1supercontigCM002471.1:382119..382550 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR010516SAP18
Homology
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|585104358|gb|EWM23350.1| (histone deacetylase complex subunit sap18 [Nannochloropsis gaditana])

HSP 1 Score: 335.495 bits (859), Expect = 1.903e-116
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEGGAGGGLRGYGGGGGEGEGGTAMGVMA 166
            MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEGGAGGGLRGYGGGGGEGEGGTAMGVMA
Sbjct:    1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEGGAGGGLRGYGGGGGEGEGGTAMGVMA 166          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|553194514|ref|XP_005855975.1| (histone deacetylase complex subunit SAP18 [Nannochloropsis gaditana CCMP526] >gi|422293083|gb|EKU20384.1| histone deacetylase complex subunit SAP18 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 283.878 bits (725), Expect = 1.909e-96
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0
Query:    1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMD 138
            MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAV D
Sbjct:    1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVED 138          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|743871379|ref|XP_011033838.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Populus euphratica])

HSP 1 Score: 122.094 bits (305), Expect = 2.273e-32
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 0
Query:   19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
            IDREK  P LLRVF K   H+   D+   GK+ P  ++  YTW DATL+EL+ L+K+V P ARRR +++ F+ VYP   GR  +R+VG   +SGR P+D K L +  +QIGD+LD+A+M
Sbjct:   43 IDREKTCPLLLRVFTKIGSHHKPEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRVVGMTHSSGRRPDDLKALAELNFQIGDYLDVAIM 160          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|566162238|ref|XP_006385749.1| (hypothetical protein POPTR_0003s11920g [Populus trichocarpa] >gi|550343007|gb|ERP63546.1| hypothetical protein POPTR_0003s11920g [Populus trichocarpa])

HSP 1 Score: 122.094 bits (305), Expect = 3.015e-32
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 0
Query:   19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
            IDREK  P LLRVF K   H+   D+   GK+ P  ++  YTW DATL+EL+ L+K+V P ARRR +++ F+ VYP   GR  +R+VG   +SGR P+D K L +  +QIGD+LD+A+M
Sbjct:   43 IDREKTCPLLLRVFTKIGSHHKPEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRVVGMTHSSGRRPDDLKALAELNFQIGDYLDVAIM 160          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|255537219|ref|XP_002509676.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Ricinus communis] >gi|223549575|gb|EEF51063.1| Histone deacetylase complex subunit SAP18, putative [Ricinus communis])

HSP 1 Score: 120.553 bits (301), Expect = 1.379e-31
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 0
Query:   18 LIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
            LIDREK  P LLRVF K   H+   D+   GK+    ++  YTW DATL+EL+ L+K+V P ARRR +++ F+ VYP   GR  +RMVG   +S R P+D+++L    +QIGD+LD+A++
Sbjct:   46 LIDREKTCPLLLRVFTKIGNHHKMEDFAVRGKEPKDDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRMVGMTHSSARRPDDSRSLVQLGFQIGDYLDVAIL 165          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|298706298|emb|CBJ29313.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.783 bits (299), Expect = 8.638e-31
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 0
Query:    8 RIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAV 136
            RIG+   +D  IDR KV P LLR FW ++ H    DY  +   LP  +L  YTWPDAT++E++ L++ VVP ARRR  R+ ++ VYP  +G+  +R V SV +  +  +D KTLRD K+Q GD++++A+
Sbjct:   82 RIGIIM-ADVKIDRTKVCPLLLRCFWTQNRHRRGEDYS-NVNSLPRDELQIYTWPDATVREITTLIQGVVPAARRRQGRLSYAFVYPDSQGKQVLRQVASVFSVTQGQDDNKTLRDLKFQTGDYMEVAI 208          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|545355034|ref|XP_005643337.1| (Sin3 complex component [Coccomyxa subellipsoidea C-169] >gi|384245298|gb|EIE18793.1| Sin3 complex component [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 117.087 bits (292), Expect = 1.123e-30
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0
Query:   19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAV 136
            IDREKV P L+RVF +  GH+   DY R G++ P  ++  YTWPDATL+EL+ L+K+V P ARR  +R+EF+LVYP   GR  MR+VG+  ++    +D KTL+   +Q GD LD+++
Sbjct:   23 IDREKVCPMLIRVFPQFGGHHRLEDYARRGQE-PKDEVQMYTWPDATLRELTDLVKEVQPAARRSTARLEFALVYPDKRGRNVMRVVGATHSTRGGQDDNKTLKQLNFQTGDFLDVSI 139          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|297828281|ref|XP_002882023.1| (histone deacetylase complex subunit SAP18 [Arabidopsis lyrata subsp. lyrata] >gi|297327862|gb|EFH58282.1| hypothetical protein ARALYDRAFT_904009 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 117.087 bits (292), Expect = 1.999e-30
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 0
Query:   19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRN--SGRSPEDAKTLRDCKYQIGDHLDIAV 136
            +DREK  P LLRVF K  GH+++ DY   G++ P  ++  YTW DATL+EL+ L+K+V   ARRR +R+ F+ VYP  +GR  MR VG   +  + + P+D+KTL D +++IGD+LD+A+
Sbjct:   32 VDREKTCPLLLRVFTKSGGHHTNEDYAVRGRE-PKDEVQIYTWKDATLRELTDLVKEVSVAARRRNARLSFAFVYPDKQGRFTMREVGQTMSFPNRKQPDDSKTLSDLRFEIGDYLDVAI 150          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|802741180|ref|XP_012087031.1| (histone deacetylase complex subunit SAP18 isoform X2 [Jatropha curcas] >gi|643712106|gb|KDP25534.1| hypothetical protein JCGZ_20690 [Jatropha curcas])

HSP 1 Score: 116.701 bits (291), Expect = 3.318e-30
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 0
Query:   19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
            IDREK  P LLRVF K   H+   D+   GK+ P  ++  YTW DATL EL+ L+K+VVP ARR+ +R+ F+ VYP   GR  +R+VG   ++ R P DAK L +  +QIGD+LD+A++
Sbjct:   40 IDREKTCPLLLRVFTKIGSHHKMEDFAVGGKE-PKDEVQIYTWKDATLHELTDLVKEVVPEARRQSARLSFAFVYPDIHGRFMLRVVGVTHSNARRPYDAKALGELSFQIGDYLDVAIL 157          
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|1133432640|ref|XP_019872390.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Aethina tumida])

HSP 1 Score: 115.931 bits (289), Expect = 6.279e-30
Identity = 61/138 (44.20%), Postives = 85/138 (61.59%), Query Frame = 0
Query:   18 LIDREKVTPSLLRVFWKEHG-HNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRT-RMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMD-EGGAGGGLRGYGGG 152
            +++R+KV P LLRVF  + G H    DY +     P  +L  YTW DATL EL+QL+K+V+P  RR G++  F+ VYP       RMR +GS     + P+DAKTL DC++ IGD+LDIA+++ E    GG +GY   
Sbjct:   14 VVNRQKVCPFLLRVFVSKSGFHFKIADYNKGST--PLNELQIYTWKDATLHELTQLVKEVLPETRRNGTKFNFAFVYPDLRAPVYRMREIGSTTTGVKGPDDAKTLGDCRFTIGDYLDIAIVNPEPWNSGGRKGYNNN 149          
The following BLAST results are available for this feature:
BLAST of EWM23350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104358|gb|EWM23350.1|1.903e-116100.00histone deacetylase complex subunit sap18 [Nannoch... [more]
gi|553194514|ref|XP_005855975.1|1.909e-9699.28histone deacetylase complex subunit SAP18 [Nannoch... [more]
gi|743871379|ref|XP_011033838.1|2.273e-3248.74PREDICTED: histone deacetylase complex subunit SAP... [more]
gi|566162238|ref|XP_006385749.1|3.015e-3248.74hypothetical protein POPTR_0003s11920g [Populus tr... [more]
gi|255537219|ref|XP_002509676.1|1.379e-3146.67PREDICTED: histone deacetylase complex subunit SAP... [more]
gi|298706298|emb|CBJ29313.1|8.638e-3144.19conserved unknown protein [Ectocarpus siliculosus][more]
gi|545355034|ref|XP_005643337.1|1.123e-3048.31Sin3 complex component [Coccomyxa subellipsoidea C... [more]
gi|297828281|ref|XP_002882023.1|1.999e-3046.67histone deacetylase complex subunit SAP18 [Arabido... [more]
gi|802741180|ref|XP_012087031.1|3.318e-3047.90histone deacetylase complex subunit SAP18 isoform ... [more]
gi|1133432640|ref|XP_019872390.1|6.279e-3044.20PREDICTED: histone deacetylase complex subunit SAP... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7345rna7345Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications