EWM23350.1, cds7328 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|585104358|gb|EWM23350.1| (histone deacetylase complex subunit sap18 [Nannochloropsis gaditana]) HSP 1 Score: 335.495 bits (859), Expect = 1.903e-116 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query: 1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEGGAGGGLRGYGGGGGEGEGGTAMGVMA 166
MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEGGAGGGLRGYGGGGGEGEGGTAMGVMA
Sbjct: 1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEGGAGGGLRGYGGGGGEGEGGTAMGVMA 166
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|553194514|ref|XP_005855975.1| (histone deacetylase complex subunit SAP18 [Nannochloropsis gaditana CCMP526] >gi|422293083|gb|EKU20384.1| histone deacetylase complex subunit SAP18 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 283.878 bits (725), Expect = 1.909e-96 Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0
Query: 1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMD 138
MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAV D
Sbjct: 1 MSSGAGARIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVED 138
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|743871379|ref|XP_011033838.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Populus euphratica]) HSP 1 Score: 122.094 bits (305), Expect = 2.273e-32 Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 0
Query: 19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
IDREK P LLRVF K H+ D+ GK+ P ++ YTW DATL+EL+ L+K+V P ARRR +++ F+ VYP GR +R+VG +SGR P+D K L + +QIGD+LD+A+M
Sbjct: 43 IDREKTCPLLLRVFTKIGSHHKPEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRVVGMTHSSGRRPDDLKALAELNFQIGDYLDVAIM 160
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|566162238|ref|XP_006385749.1| (hypothetical protein POPTR_0003s11920g [Populus trichocarpa] >gi|550343007|gb|ERP63546.1| hypothetical protein POPTR_0003s11920g [Populus trichocarpa]) HSP 1 Score: 122.094 bits (305), Expect = 3.015e-32 Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 0
Query: 19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
IDREK P LLRVF K H+ D+ GK+ P ++ YTW DATL+EL+ L+K+V P ARRR +++ F+ VYP GR +R+VG +SGR P+D K L + +QIGD+LD+A+M
Sbjct: 43 IDREKTCPLLLRVFTKIGSHHKPEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRVVGMTHSSGRRPDDLKALAELNFQIGDYLDVAIM 160
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|255537219|ref|XP_002509676.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Ricinus communis] >gi|223549575|gb|EEF51063.1| Histone deacetylase complex subunit SAP18, putative [Ricinus communis]) HSP 1 Score: 120.553 bits (301), Expect = 1.379e-31 Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 0
Query: 18 LIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
LIDREK P LLRVF K H+ D+ GK+ ++ YTW DATL+EL+ L+K+V P ARRR +++ F+ VYP GR +RMVG +S R P+D+++L +QIGD+LD+A++
Sbjct: 46 LIDREKTCPLLLRVFTKIGNHHKMEDFAVRGKEPKDDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRMVGMTHSSARRPDDSRSLVQLGFQIGDYLDVAIL 165
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|298706298|emb|CBJ29313.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 119.783 bits (299), Expect = 8.638e-31 Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 0
Query: 8 RIGVGGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAV 136
RIG+ +D IDR KV P LLR FW ++ H DY + LP +L YTWPDAT++E++ L++ VVP ARRR R+ ++ VYP +G+ +R V SV + + +D KTLRD K+Q GD++++A+
Sbjct: 82 RIGIIM-ADVKIDRTKVCPLLLRCFWTQNRHRRGEDYS-NVNSLPRDELQIYTWPDATVREITTLIQGVVPAARRRQGRLSYAFVYPDSQGKQVLRQVASVFSVTQGQDDNKTLRDLKFQTGDYMEVAI 208
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|545355034|ref|XP_005643337.1| (Sin3 complex component [Coccomyxa subellipsoidea C-169] >gi|384245298|gb|EIE18793.1| Sin3 complex component [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 117.087 bits (292), Expect = 1.123e-30 Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0
Query: 19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAV 136
IDREKV P L+RVF + GH+ DY R G++ P ++ YTWPDATL+EL+ L+K+V P ARR +R+EF+LVYP GR MR+VG+ ++ +D KTL+ +Q GD LD+++
Sbjct: 23 IDREKVCPMLIRVFPQFGGHHRLEDYARRGQE-PKDEVQMYTWPDATLRELTDLVKEVQPAARRSTARLEFALVYPDKRGRNVMRVVGATHSTRGGQDDNKTLKQLNFQTGDFLDVSI 139
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|297828281|ref|XP_002882023.1| (histone deacetylase complex subunit SAP18 [Arabidopsis lyrata subsp. lyrata] >gi|297327862|gb|EFH58282.1| hypothetical protein ARALYDRAFT_904009 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 117.087 bits (292), Expect = 1.999e-30 Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 0
Query: 19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRN--SGRSPEDAKTLRDCKYQIGDHLDIAV 136
+DREK P LLRVF K GH+++ DY G++ P ++ YTW DATL+EL+ L+K+V ARRR +R+ F+ VYP +GR MR VG + + + P+D+KTL D +++IGD+LD+A+
Sbjct: 32 VDREKTCPLLLRVFTKSGGHHTNEDYAVRGRE-PKDEVQIYTWKDATLRELTDLVKEVSVAARRRNARLSFAFVYPDKQGRFTMREVGQTMSFPNRKQPDDSKTLSDLRFEIGDYLDVAI 150
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|802741180|ref|XP_012087031.1| (histone deacetylase complex subunit SAP18 isoform X2 [Jatropha curcas] >gi|643712106|gb|KDP25534.1| hypothetical protein JCGZ_20690 [Jatropha curcas]) HSP 1 Score: 116.701 bits (291), Expect = 3.318e-30 Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 0
Query: 19 IDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVM 137
IDREK P LLRVF K H+ D+ GK+ P ++ YTW DATL EL+ L+K+VVP ARR+ +R+ F+ VYP GR +R+VG ++ R P DAK L + +QIGD+LD+A++
Sbjct: 40 IDREKTCPLLLRVFTKIGSHHKMEDFAVGGKE-PKDEVQIYTWKDATLHELTDLVKEVVPEARRQSARLSFAFVYPDIHGRFMLRVVGVTHSNARRPYDAKALGELSFQIGDYLDVAIL 157
BLAST of EWM23350.1 vs. NCBI_GenBank
Match: gi|1133432640|ref|XP_019872390.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Aethina tumida]) HSP 1 Score: 115.931 bits (289), Expect = 6.279e-30 Identity = 61/138 (44.20%), Postives = 85/138 (61.59%), Query Frame = 0
Query: 18 LIDREKVTPSLLRVFWKEHG-HNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRT-RMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMD-EGGAGGGLRGYGGG 152
+++R+KV P LLRVF + G H DY + P +L YTW DATL EL+QL+K+V+P RR G++ F+ VYP RMR +GS + P+DAKTL DC++ IGD+LDIA+++ E GG +GY
Sbjct: 14 VVNRQKVCPFLLRVFVSKSGFHFKIADYNKGST--PLNELQIYTWKDATLHELTQLVKEVLPETRRNGTKFNFAFVYPDLRAPVYRMREIGSTTTGVKGPDDAKTLGDCRFTIGDYLDIAIVNPEPWNSGGRKGYNNN 149 The following BLAST results are available for this feature:
BLAST of EWM23350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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