rna7343, rna7343 (mRNA) Nannochloropsis gaditana

Overview
Namerna7343
Unique Namerna7343
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length708
Alignment locationCM002471.1:374615..376456 +

Link to JBrowse

Properties
Property NameValue
ProductTransmembrane adaptor Erv26
Orig transcript idgnl|cribi|Naga_100057g5.3918.mrna
Orig protein idgnl|cribi|Naga_100057g5.3918
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:374615..376456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100057g5gene7107Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7343rna7343-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23359.1cds7326Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7343 ID=rna7343|Name=rna7343|organism=Nannochloropsis gaditana|type=mRNA|length=708bp
ATGCCGTTCATATTTTTCTTTGCCTCATCCATCGCCAACCTAGGTGGGGG
CAGGAAAAGACGAAGACGAGAGCGGCGATGGGCTCAAGATGCTCTACGGG
ACGACGAGTACATCGAAATGCTTGAAAACGAGGCCACGAGGAAAAGAAAG
AAGCAACTGCCAGAAATCAGCATCCAGCCCCGGCAGCCGAACGAGAGCAT
GAAGGCATTCCAACACCGGGTTCGCCAAGACTCGAAAGCCCTCCTTCGAG
AGAGCAACCTGGCCAACAGCACCACCAAGGCTCGCCGTCGCGAGTATCTG
AGAATAAGGAAAGCGAACAAGAAACGCAAAGCCCAGGGCCTGCCTCCCTT
GCCTCACCGCTCGAGGGGCCAGGAGGAATGCGACGGACGAGAGAATCAAG
GAGGCTTGATGGACCCCGCGCCCTCCTTCGCGGCCGCCGAGACCGTGCCA
GACCCGGCGGGAGGAGACAGGAACTGAAGGCAAATGAGAGCGGAGAGAAG
GAGGGGCCAGTTGCCAAGGCGGCCGCCGCACGCGCTAAGCAATCTCCCGC
TGAGAAGGCGGATTGGGCCAAGCTGAGGGAAGAGGCGCAGCAGGCTTACC
GCGCCATGAAGGAGGGCAAGGAACAACAAGAGCTTACTTCAAAATTTGTG
TGAAGGCATATGTGAAGAAAAATTTGCCAAAACAAAAAGAAGGGGGGAGA
GGGCCTCG
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protein sequence of rna7343

>rna7343-protein ID=rna7343-protein|Name=rna7343|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MGYVLAAVGYIAGYMAILFQTICIACGLYYAAELAEEYASATKRMIMWSI
SAVVGVHVLLYFESFPLLVLLGGIACHGAYAWLLMDFPKVEIFSYKFLLG
LVALCADHYIWFQYLHGRPSIVPSALTSIAIFFLLVWFVPFAIFVSLSVN
DNVLPSMTSSPQYSSSSSDAMYYSDYSSTRSLSMSDSGSYSKGTSRNTSK
KGGIRGMLDTLNAHIAPGIAKNV
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mRNA from alignment at CM002471.1:374615..376456+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7343 ID=rna7343|Name=rna7343|organism=Nannochloropsis gaditana|type=mRNA|length=1842bp|location=Sequence derived from alignment at CM002471.1:374615..376456+ (Nannochloropsis gaditana)
CGATGCCCTCACGTCCTTCGACCCATAGATTTTGACCGCAATGAATTTGG
CTAAGTAGTGGCGCACTTCTACTTGACTGCAACTGTTGGACCGCGCTTTG
CTGGACGCTGGGCAACCCCTAAACCCGAGACGTTACGACTGCTCCCAGCA
CGTTTCACGCTGTATCTTTCTTCCGGGACTCATTGCTTTCACGCACAGAC
AGCCTTCGCACACATTTATCCTCCTTTGCTGCTACAGAAATATGGGGTAT
GTTCTTGCTGCCGTTGGGTACATCGCGGGTTACATGGCCATCCTGTTTCA
GACCATATGCATCGGTAAGTGAAGTTCAAGCTCAAGCAAGCTTTTGTTCG
ATGCGGGCCAAAACAGGGCGGTGTCTTTTTGCAGCAACAAACGTGTGAAG
TGTCCATAAGACTGTCAATTATTACTAAAGGTCGATTTTCTTTATTTTTG
ATGCTTAGAAACCAGTTTTTGTCCGTATAAAAAACATTGTTCCCGTCCCC
ACCACTTATCCCACCCGTTTTCACCTGGCATGGGCGGATGCTTATCAACT
TCACCATGTCACCGCTCACTCTGAATTCTCATGTAATTTCAATGATGCAG
CATGCGGACTCTACTATGCTGCAGAGCTCGCGGAGGAATACGCGTCGGCC
ACCAAGCGGATGATCATGTGGTCAATCTCCGCCGTCGTCGgtgtccatgt
cctcctctaTTTCGAATCCTTCCCACTCCTGGTCCTCTTGGGCGGTATTG
CGTGCCACGGAGCTTATGCCTGGCTGTTGATGGATTTTCCAAAGGTAGAG
ATATTCAGTTATAAGTTTTTGTTGGGCCTGGTCGCACTCTGTGCCGATCA
TTACATCTGGTTTCAGTACCTTCACGGCCGTCCTTCCATCGTCCCGAGTG
CCCTAACAAGCATTGTACGTAAACGGGTTGAGGTTTTAAGGAATCGACAA
AggatgaagatgacgagAACTGCTACCCTGTTGCAGAAATTCATGGGTAG
TAGAGAGAAGCCGGTAGCGGTTGGGACTTATTATATAGAGCTGAGACCTA
TACTTCCCTGTCCGGGCTGCTTGTGCGCAGCATTTGGTTGGGGTGAAGTG
TGCTTAAAAGTGTATGCACTCTTTCTCACCATCCATACACTCGCTTGTTC
AAGGAAGGGTTGGCAGTCGTTAACGAACCATAATCGCATACTTCCCAAGC
TTACCTTATGAAAACACTTTTGCCCAGGctatcttcttccttctggTCTG
GTTCGTGCCCTTTGCGATCTTCGTCTCGCTCTCTGTGAACGACAACGTTC
TGCCCTCTATGACGTCTTCCCCCCAATATTCGAGTTCTTCAAGTGGTACG
TGTCCGCGTTGTTTGCGGCCTCTCGATGAGCATAAAATATTCAAAGCATT
CCTCCGCACCTCCCACCATCTCCGCTCTGCCGCAGACGCCATGTACTATT
CGGACTACTCTTCGACacgctccctttccatgtctGATTCGGGCTCCTAC
AGCAAAGGCACTAGCCGGAACACGTCCAAGAAGGGCGGCATACGGGGCAT
GCTTGATACCCTGAACGCCCACATCGCCCCTGGTATTGCCAAAAATGTTT
GAAGGCAAGGGGCTGACTTAGGATGAAGGGCCATGAAAGCGCAAAACAAC
AGAAGTGAATGGCTCGCCGTCTTTAGCCGATCAGTTAGTGCATGTCACAA
AGTATCAGTTGTGTAGGACTACTTGGAGGCAAAAAATAAAGTCGGAGGGA
ATGATAGGACTGTCAATTCTCTCACGGGAGTGAAGAAAGAATAAATTCGA
GTGTGACACGCCTTGGAAATTGAACCAAGCAATATATTACTG
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Coding sequence (CDS) from alignment at CM002471.1:374615..376456+

>rna7343 ID=rna7343|Name=rna7343|organism=Nannochloropsis gaditana|type=CDS|length=2688bp|location=Sequence derived from alignment at CM002471.1:374615..376456+ (Nannochloropsis gaditana)
ATGGGGTATGTTCTTGCTGCCGTTGGGTACATCGCGGGTTACATGGCCAT
CCTGTTTCAGACCATATGCATCGCATGCGGACTCTACTATGCTGCAGAGC
TCGCGGAGGAATACGCGTCGGCCACCAAGCGGATGATCATGTGGTCAATC
TCCGCCGTCGTCGgtgtccatgtcctcctctaTTTCGAATCCTTCCCACT
CCTGGTCCTCTTGGGCGGTATTGCGTGCCACGGAGCTTATGCCTGGCTGT
TGATGGATTTTCCAAAGGTAGAGATATTCAGTTATAAGTTTTTGTTGGGC
CTGGTCGCACTCTGTGCCGATCATTACATCTGGTTTCAGTACCTTCACGG
CCGTCCTTCCATCGTCCCGAGTGCCCTAACAAGCATTGctatcttcttcc
ttctggTCTGGTTCGTGCCCTTTGCGATCTTCGTCTCGCTCTCTGTGAAC
GACAACGTTCTGCCCTCTATGACGTCTTCCCCCCAATATTCGAGTTCTTC
AAGTGACGCCATGTACTATTCGGACTACTCTTCGACacgctccctttcca
tgtctGATTCGGGCTCCTACAGCAAAGGCACTAGCCGGAACACGTCCAAG
AAGGGCGGCATACGGGGCATGCTTGATACCCTGAACGCCCACATCGCCCC
TGGTATTGCCAAAAATGTTTGAATGGGGTATGTTCTTGCTGCCGTTGGGT
ACATCGCGGGTTACATGGCCATCCTGTTTCAGACCATATGCATCGCATGC
GGACTCTACTATGCTGCAGAGCTCGCGGAGGAATACGCGTCGGCCACCAA
GCGGATGATCATGTGGTCAATCTCCGCCGTCGTCGgtgtccatgtcctcc
tctaTTTCGAATCCTTCCCACTCCTGGTCCTCTTGGGCGGTATTGCGTGC
CACGGAGCTTATGCCTGGCTGTTGATGGATTTTCCAAAGGTAGAGATATT
CAGTTATAAGTTTTTGTTGGGCCTGGTCGCACTCTGTGCCGATCATTACA
TCTGGTTTCAGTACCTTCACGGCCGTCCTTCCATCGTCCCGAGTGCCCTA
ACAAGCATTGctatcttcttccttctggTCTGGTTCGTGCCCTTTGCGAT
CTTCGTCTCGCTCTCTGTGAACGACAACGTTCTGCCCTCTATGACGTCTT
CCCCCCAATATTCGAGTTCTTCAAGTGACGCCATGTACTATTCGGACTAC
TCTTCGACacgctccctttccatgtctGATTCGGGCTCCTACAGCAAAGG
CACTAGCCGGAACACGTCCAAGAAGGGCGGCATACGGGGCATGCTTGATA
CCCTGAACGCCCACATCGCCCCTGGTATTGCCAAAAATGTTTGAATGGGG
TATGTTCTTGCTGCCGTTGGGTACATCGCGGGTTACATGGCCATCCTGTT
TCAGACCATATGCATCGCATGCGGACTCTACTATGCTGCAGAGCTCGCGG
AGGAATACGCGTCGGCCACCAAGCGGATGATCATGTGGTCAATCTCCGCC
GTCGTCGgtgtccatgtcctcctctaTTTCGAATCCTTCCCACTCCTGGT
CCTCTTGGGCGGTATTGCGTGCCACGGAGCTTATGCCTGGCTGTTGATGG
ATTTTCCAAAGGTAGAGATATTCAGTTATAAGTTTTTGTTGGGCCTGGTC
GCACTCTGTGCCGATCATTACATCTGGTTTCAGTACCTTCACGGCCGTCC
TTCCATCGTCCCGAGTGCCCTAACAAGCATTGctatcttcttccttctgg
TCTGGTTCGTGCCCTTTGCGATCTTCGTCTCGCTCTCTGTGAACGACAAC
GTTCTGCCCTCTATGACGTCTTCCCCCCAATATTCGAGTTCTTCAAGTGA
CGCCATGTACTATTCGGACTACTCTTCGACacgctccctttccatgtctG
ATTCGGGCTCCTACAGCAAAGGCACTAGCCGGAACACGTCCAAGAAGGGC
GGCATACGGGGCATGCTTGATACCCTGAACGCCCACATCGCCCCTGGTAT
TGCCAAAAATGTTTGAATGGGGTATGTTCTTGCTGCCGTTGGGTACATCG
CGGGTTACATGGCCATCCTGTTTCAGACCATATGCATCGCATGCGGACTC
TACTATGCTGCAGAGCTCGCGGAGGAATACGCGTCGGCCACCAAGCGGAT
GATCATGTGGTCAATCTCCGCCGTCGTCGgtgtccatgtcctcctctaTT
TCGAATCCTTCCCACTCCTGGTCCTCTTGGGCGGTATTGCGTGCCACGGA
GCTTATGCCTGGCTGTTGATGGATTTTCCAAAGGTAGAGATATTCAGTTA
TAAGTTTTTGTTGGGCCTGGTCGCACTCTGTGCCGATCATTACATCTGGT
TTCAGTACCTTCACGGCCGTCCTTCCATCGTCCCGAGTGCCCTAACAAGC
ATTGctatcttcttccttctggTCTGGTTCGTGCCCTTTGCGATCTTCGT
CTCGCTCTCTGTGAACGACAACGTTCTGCCCTCTATGACGTCTTCCCCCC
AATATTCGAGTTCTTCAAGTGACGCCATGTACTATTCGGACTACTCTTCG
ACacgctccctttccatgtctGATTCGGGCTCCTACAGCAAAGGCACTAG
CCGGAACACGTCCAAGAAGGGCGGCATACGGGGCATGCTTGATACCCTGA
ACGCCCACATCGCCCCTGGTATTGCCAAAAATGTTTGA
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Synonyms
Publications