rna7339, rna7339 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7339
Unique Name	rna7339
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1345
Alignment location	CM002471.1:362791..364807 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100057g11.3921.mrna
Orig protein id	gnl\|cribi\|Naga_100057g11.3921
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:362791..364807 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g11	gene7103	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7339	rna7339-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23362.1	cds7322	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:362791..364807-
coding sequence from alignment at CM002471.1:362791..364807-

mRNA sequence

>rna7339 ID=rna7339|Name=rna7339|organism=Nannochloropsis gaditana|type=mRNA|length=1345bp
GATCGAAACTCTTGTAGGGAATTATGGATGATTCGACAGAGAGACTTATC
CCAAAATGGGCTTCCTTTTACCCTCGTTGTTTTCAATAAGTGATTTTGTG
CCCTGCTGCTCTTTTTTCACGCAGGACACGCGGGGGTCAGAGGGGGAGGA
GCCTGTGACGATCACGGTTGAAGTTTGGTAATCCTGTCGAGTGAACCTAT
GGTTGAATAGAAAGACGGGTTTCCACGTTCCAATGTACACTGAGCCCTGG
TATCTTTTTACTTGTCCTGTGTTTGTATTGGATGCTCATACTGTGGAGGT
TTAAAGCCAGTGGGCTGGGCTTTATTAGAAAGCTGGTAATGGTGAACAAA
CCTCCCACTCTTATCTATACACGTTAGCGCTAGGAAGCGGATGCCTTCGA
CCAATCTGAATCCTGTTGCTGCTACTGAAAAGGCCCTTTCAGGAGGTAAA
CGAAAGAGAAAGAAGAAGCGTAAGCTAGCCGCAGCACGGGCTGCCAACAC
CACTCCAAAGAGGACAAAAAAGAGTATTTCATCTGAGGAAGAGAAGCATC
TTCTAGAAAAAGGGGCGCTAGCTGCGAGAGAATATCTGCAGCGATGGGCT
CTACGGGTAAGGATATGCTGTTAAATGCGGTGTTTGAAAAAAAGAATTCC
GTGTTTCGTTGCTTGGCAACGTCGTGGGTGACAGTGAGACACAGCTGTAA
TGGTAAGCGATCTCATCCACGCTATCTTGGACTCTATAAAAAGTGCTTAT
GTGCACCATCGCATCATAGATCATGTAAAACAATTCTTTTGCGTCCGGGC
ACAGGATCGAGGAGGGGAGTGGCGGTTCCAGACAAAACGACAGGTCTGGA
TTTTAAAGCACTTGTACTCGCAAAATGTCATCGACAAAACGTTTTTCAAA
AAACTAGTGTTGCCATACATAAGTACCTTGCACGGTGGCGCCAAAGAGCG
TGTTCTTACAGAGGCACAAGGGTATTTGCAGAGGGAGGCTGGACCTGTGA
GATCTGATCTTGAAAGCGAGGAAGACAAGGAGGGGAGGGGCGAGGGCGGG
GAGAAAGGAAGTGACCGTCGTGACTCACGGGGGATGACTGAGGTTGGCGA
GAGCACCAACCGAGTCAGGAGGAAACGCGCGAAAAAAATAGTTGCGGCAT
TGGCAGATGCAGAAGGTGCCAAAGACGAGGAAAGCACAAAGTAAAAGTGA
AAAACGACAGGCGGCATCCACATTCATTCGTCACGCTGCTTCTTATTTCT
CAGTCGTCGAGGCACTTTTCACAAATACACAAACTTAGGCATGCCCGGGA
GGGCTCACCGCGATTCGACGATTGAAAACAGCCTGAGTTGCTTCC

protein sequence of rna7339

>rna7339-protein ID=rna7339-protein|Name=rna7339|organism=Nannochloropsis gaditana|type=polypeptide|length=444bp
MGEVTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCE
HDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYV
TRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPR
GREGRGLVLEEVTFSCTHEVVKALRLYRAPGQSGSCLGGVCDGEPLVKWT
ARVEPKGRGRSREDRAADTQVCFEVFHSRVGALHPLAPCLSLSASGGQLR
EFEDLQGLWRGVYGSHGWEIIQVRLRRLWTDGSAGTSPSIGGRVILEGLK
LVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVL
AEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLL
WHDEGFSSRHCIELTRLIEGEEAGEGEGRAFVEGLEATSGSESD

mRNA from alignment at CM002471.1:362791..364807-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7339 ID=rna7339|Name=rna7339|organism=Nannochloropsis gaditana|type=mRNA|length=2017bp|location=Sequence derived from alignment at CM002471.1:362791..364807- (Nannochloropsis gaditana)
CCCTTCTGTTGCAATCGATATATTAAGTCACGTGTTGCTAGATGCACAGG
CTGCAGGACTGCCAAGCAACAGCTCTATCACTCCGGGAAAAATGCATCCA
GGTGCATGTTGTGCTTGTACTTAATGGCCCGAGGATAAGTGGAAGTCTGT
CGGCACATTGACCTCCTGGGGTATCTTACACGTCACTTCACTGCCTAGCA
CCGTGCTTTCAAGCCTCCAATGCTCTCGCCGCTTGTCCTAATTCTTCATC
TTCCTACACACTACCTTAGAAGAGTGAGGGAAGGGCCTCCTTTTCACCCT
TCGACTTCTGCCTCGCAATCTCACCACACAGTCCAACCGGTCGTCGGCCA
GGTCAGAGCGCCATGGGGGAAGTGACAACGCCCTCGACACCGAGACCCTT
CCTTGGTGCGTAGTAATGCTCAGCATTTCTTTGCAAATCCTGTCTTTAAG
ATGTATACTGATGAGTTGTCTCAATAATTTCTACTAGGCACTCTTTCGGG
TGATACGTTGCTCACTGTGCTGCAGTTTTTAGAAGTCGCAGACGGGACAC
GCGTGTGTTTAGTTTGCCCTTACCTGAACAAATCTGTATGTGAACACGAT
GAAGTTCTATTCAAAGCACATGTTTTGAACGAGCAATTAGTCTCGCTACC
GACTCCGGTGACCTTGAAACAGAAAGTCCGAGCCGCCCAAACCCTGCAGA
CGGCTCTGGCCCTGAAGGGAGGGTGGAGGGGCTTGTCTTACGTCACGCGG
CATGTCACAGGACGGCCATGCCTCGGCTATTTCCGGCAGATACCTCGCGA
CTTCAGGAGCGATTTCAGGGGCAAGCTCTTCCGCGTACGCTTGGAGGATA
CCGAGGTGTCTGACATGGCTTGGGCGCCTGAGGGGCTTCCCCGGGGCAGG
GAGGGGCGGGGACTGGTGCTGGAGGAGGTAACATTCTCGTGCACGCATGA
GGTGGTGAAGGCCTTACGACTGTATAGAGCTCCTGGGCAAAGCGGGTCTT
GCTTGGGAGGAGTTTGCGATGGTGAGCCGTTGGTGAAGTGGACAGCCCGA
GTAGAGCCGAAAGGCCGGGGCCGGAGCCGGGAGGATAGGGCCGCGGATAC
GCAAGTGTGCTTCGAAGTTTTTCACTCGAGGGTAGGGGCGTTGCACCCTC
TGGCGCCCTGCCTCTCGTTGTCGGCCTCCGGGGGACAGCTGCGCGAGTTC
GAGGACCTGCAGGGTCTGTGGAGAGGCGTGTATGGGAGCCACGGCTGGGA
GATTATCCAGGTCCGGCTCCGACGACTGTGGACGGATGGCAGCGCAGGCA
CGTCCCCAAGCATCGGGGGCCGCGTCATCCTGGAGGGGCTCAAGCTGGTG
GGGGACGCCAATGTGCCGGCGAACGAGTGGACCTTCCGAGCCGACGTGAC
GGCCCCCCCTCTGGACAGGGCGGAGGCGTTGGGGGCGGACACTAGGCCCA
TATACTCACTAACTACGCGAATGGTTCCACAGTCATGGGTCCTGGCCGAG
GAGGCCGGGCGGATCCGAGCCGTTTACCGTGGCAAGGGGCAGGTCAACAT
GGTGCCGGGCATCTGGGAGCCGCAGGAGGTGGGGGTGGACGTGATGCTAC
TCAGGCGGGAGGAGAACGGGGGGCGGGGGGGAATCTGGCTGCTCTGGCAC
GATGAGGGCTTCTCGTCCAGGCATTGCATCGAGCTGACGCGGTTGATAGA
GGGGGAGGAGGCGGGGGAAGGCGAGGGGCGGGCTTTTGTGGAGGGCTTGG
AGGCGACGTCGGGGTCAGAGTCCGATTAGGGGAGCGCCGGGGCGGGGCAC
CGGCCTGAGCCTCTGCAGAGACTCTTTGGAGGGAGGGACGGGTCACGTGC
TAAGGGCATGACCAAAGCACTGGATAGGAAGCAACTCAGGCTGTTTTCAA
TCGTCGAATCGCGGTGAGCCCTCCCGGGCATGCCTAAGTTTGTGTATTTG
TGAAAAGTGCCTCGACGACTGAGAAATAAGAAGCAGCGTGACGAATGAAT
GTGGATGCCGCCTGTCG

Coding sequence (CDS) from alignment at CM002471.1:362791..364807-

>rna7339 ID=rna7339|Name=rna7339|organism=Nannochloropsis gaditana|type=CDS|length=2670bp|location=Sequence derived from alignment at CM002471.1:362791..364807- (Nannochloropsis gaditana)
GCACTCTTTCGGGTGATACGTTGCTCACTGTGCTGCAGTTTTTAGAAGTC
GCAGACGGGACACGCGTGTGTTTAGTTTGCCCTTACCTGAACAAATCTGT
ATGTGAACACGATGAAGTTCTATTCAAAGCACATGTTTTGAACGAGCAAT
TAGTCTCGCTACCGACTCCGGTGACCTTGAAACAGAAAGTCCGAGCCGCC
CAAACCCTGCAGACGGCTCTGGCCCTGAAGGGAGGGTGGAGGGGCTTGTC
TTACGTCACGCGGCATGTCACAGGACGGCCATGCCTCGGCTATTTCCGGC
AGATACCTCGCGACTTCAGGAGCGATTTCAGGGGCAAGCTCTTCCGCGTA
CGCTTGGAGGATACCGAGGTGTCTGACATGGCTTGGGCGCCTGAGGGGCT
TCCCCGGGGCAGGGAGGGGCGGGGACTGGTGCTGGAGGAGGTAACATTCT
CGTGCACGCATGAGGTGGTGAAGGCCTTACGACTGTATAGAGCTCCTGGG
CAAAGCGGGTCTTGCTTGGGAGGAGTTTGCGATGGTGAGCCGTTGGTGAA
GTGGACAGCCCGAGTAGAGCCGAAAGGCCGGGGCCGGAGCCGGGAGGATA
GGGCCGCGGATACGCAAGTGTGCTTCGAAGTTTTTCACTCGAGGGTAGGG
GCGTTGCACCCTCTGGCGCCCTGCCTCTCGTTGTCGGCCTCCGGGGGACA
GCTGCGCGAGTTCGAGGACCTGCAGGGTCTGTGGAGAGGCGTGTATGGGA
GCCACGGCTGGGAGATTATCCAGGTCCGGCTCCGACGACTGTGGACGGAT
GGCAGCGCAGGCACGTCCCCAAGCATCGGGGGCCGCGTCATCCTGGAGGG
GCTCAAGCTGGTGGGGGACGCCAATGTGCCGGCGAACGAGTGGACCTTCC
GAGCCGACGTGACGGCCCCCCCTCTGGACAGGGCGGAGGCGTTGGGGGCG
GACACTAGGCCCATATACTCACTAACTACGCGAATGGTTCCACAGTCATG
GGTCCTGGCCGAGGAGGCCGGGCGGATCCGAGCCGTTTACCGTGGCAAGG
GGCAGGTCAACATGGTGCCGGGCATCTGGGAGCCGCAGGAGGTGGGGGTG
GACGTGATGCTACTCAGGCGGGAGGAGAACGGGGGGCGGGGGGGAATCTG
GCTGCTCTGGCACGATGAGGGCTTCTCGTCCAGGCATTGCATCGAGCTGA
CGCGGTTGATAGAGGGGGAGGAGGCGGGGGAAGGCGAGGGGCGGGCTTTT
GTGGAGGGCTTGGAGGCGACGTCGGGGTCAGAGTCCGATTAGATGGGGGA
AGTGACAACGCCCTCGACACCGAGACCCTTCCTTGGCACTCTTTCGGGTG
ATACGTTGCTCACTGTGCTGCAGTTTTTAGAAGTCGCAGACGGGACACGC
GTGTGTTTAGTTTGCCCTTACCTGAACAAATCTGTATGTGAACACGATGA
AGTTCTATTCAAAGCACATGTTTTGAACGAGCAATTAGTCTCGCTACCGA
CTCCGGTGACCTTGAAACAGAAAGTCCGAGCCGCCCAAACCCTGCAGACG
GCTCTGGCCCTGAAGGGAGGGTGGAGGGGCTTGTCTTACGTCACGCGGCA
TGTCACAGGACGGCCATGCCTCGGCTATTTCCGGCAGATACCTCGCGACT
TCAGGAGCGATTTCAGGGGCAAGCTCTTCCGCGTACGCTTGGAGGATACC
GAGGTGTCTGACATGGCTTGGGCGCCTGAGGGGCTTCCCCGGGGCAGGGA
GGGGCGGGGACTGGTGCTGGAGGAGGTAACATTCTCGTGCACGCATGAGG
TGGTGAAGGCCTTACGACTGTATAGAGCTCCTGGGCAAAGCGGGTCTTGC
TTGGGAGGAGTTTGCGATGGTGAGCCGTTGGTGAAGTGGACAGCCCGAGT
AGAGCCGAAAGGCCGGGGCCGGAGCCGGGAGGATAGGGCCGCGGATACGC
AAGTGTGCTTCGAAGTTTTTCACTCGAGGGTAGGGGCGTTGCACCCTCTG
GCGCCCTGCCTCTCGTTGTCGGCCTCCGGGGGACAGCTGCGCGAGTTCGA
GGACCTGCAGGGTCTGTGGAGAGGCGTGTATGGGAGCCACGGCTGGGAGA
TTATCCAGGTCCGGCTCCGACGACTGTGGACGGATGGCAGCGCAGGCACG
TCCCCAAGCATCGGGGGCCGCGTCATCCTGGAGGGGCTCAAGCTGGTGGG
GGACGCCAATGTGCCGGCGAACGAGTGGACCTTCCGAGCCGACGTGACGG
CCCCCCCTCTGGACAGGGCGGAGGCGTTGGGGGCGGACACTAGGCCCATA
TACTCACTAACTACGCGAATGGTTCCACAGTCATGGGTCCTGGCCGAGGA
GGCCGGGCGGATCCGAGCCGTTTACCGTGGCAAGGGGCAGGTCAACATGG
TGCCGGGCATCTGGGAGCCGCAGGAGGTGGGGGTGGACGTGATGCTACTC
AGGCGGGAGGAGAACGGGGGGCGGGGGGGAATCTGGCTGCTCTGGCACGA
TGAGGGCTTCTCGTCCAGGCATTGCATCGAGCTGACGCGGTTGATAGAGG
GGGAGGAGGCGGGGGAAGGCGAGGGGCGGGCTTTTGTGGAGGGCTTGGAG
GCGACGTCGGGGTCAGAGTCCGATTAGATGGGGGAAGTGACAACGCCCTC
GACACCGAGACCCTTCCTTG

Synonyms

Publications