EWM23362.1, cds7322 (CDS) Nannochloropsis gaditana

Overview
NameEWM23362.1
Unique Namecds7322
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:364403..364445 -
Alignment locationCM002471.1:363029..364320 -

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Properties
Property NameValue
Protein idEWM23362.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g11.3921.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:364403..364445 -
CM002471.1supercontigCM002471.1:363029..364320 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Homology
BLAST of EWM23362.1 vs. NCBI_GenBank
Match: gi|585104370|gb|EWM23362.1| (hypothetical protein Naga_100057g11 [Nannochloropsis gaditana])

HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0
Query:    1 MGEVTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCEHDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYVTRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPRGREGRGLVLEEVTFSCTHEVVKALRLYRAPGQSGSCLGGVCDGEPLVKWTARVEPKGRGRSREDRAADTQVCFEVFHSRVGALHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRLWTDGSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEEAGEGEGRAFVEGLEATSGSESD 444
            MGEVTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCEHDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYVTRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPRGREGRGLVLEEVTFSCTHEVVKALRLYRAPGQSGSCLGGVCDGEPLVKWTARVEPKGRGRSREDRAADTQVCFEVFHSRVGALHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRLWTDGSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEEAGEGEGRAFVEGLEATSGSESD
Sbjct:    1 MGEVTTPSTPRPFLGTLSGDTLLTVLQFLEVADGTRVCLVCPYLNKSVCEHDEVLFKAHVLNEQLVSLPTPVTLKQKVRAAQTLQTALALKGGWRGLSYVTRHVTGRPCLGYFRQIPRDFRSDFRGKLFRVRLEDTEVSDMAWAPEGLPRGREGRGLVLEEVTFSCTHEVVKALRLYRAPGQSGSCLGGVCDGEPLVKWTARVEPKGRGRSREDRAADTQVCFEVFHSRVGALHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRLWTDGSAGTSPSIGGRVILEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRLIEGEEAGEGEGRAFVEGLEATSGSESD 444          
BLAST of EWM23362.1 vs. NCBI_GenBank
Match: gi|760444759|ref|XP_011399448.1| (hypothetical protein F751_2097 [Auxenochlorella protothecoides] >gi|675354070|gb|KFM26510.1| hypothetical protein F751_2097 [Auxenochlorella protothecoides])

HSP 1 Score: 64.3142 bits (155), Expect = 1.613e-7
Identity = 58/182 (31.87%), Postives = 84/182 (46.15%), Query Frame = 0
Query:  255 LQGLWRGVYGSHGWEIIQVRLRRLWTDGSAGTSPSIGGR--VILEGLKLVGDANVPANEWTFRADV---TAPPLDRA---EALGADTRPIYSLTTRMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGI----------WEPQEV-GVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRL 417
            +QGL  G Y +HG E++ +RL      G +   PS  G   V LE LKL+GD NVP  + +F  D     A P   +   +    D+RPIYS       +S V+  E   I A +R  GQ+N   G+          W+P+ V  V V+  + + +       +++ DE    RH IE T L
Sbjct:  225 MQGLVTGAYSTHGTEVLSLRL-----CGPSSAPPSDSGVTGVRLEALKLIGDVNVPGGQLSFVVDAESGVAGPTRHSRLHDFAAEDSRPIYSFADG---RSAVVDVERLPICAQFRALGQINEFEGVLVEVEGRGGLWQPEWVPAVFVVYSQAQPHPAGHSCAIVFCDEDRPYRHIIEFTPL 398          
The following BLAST results are available for this feature:
BLAST of EWM23362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104370|gb|EWM23362.1|0.000e+0100.00hypothetical protein Naga_100057g11 [Nannochlorops... [more]
gi|760444759|ref|XP_011399448.1|1.613e-731.87hypothetical protein F751_2097 [Auxenochlorella pr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7339rna7339Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications